Wall clock time and date at job start Tue Mar 31 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47643 * 2 1 4 4 C 1.53006 * 109.46638 * 239.99988 * 2 1 3 5 5 C 1.53003 * 109.46974 * 120.00632 * 2 1 3 6 6 H 1.09003 * 109.50397 * 180.02562 * 5 2 1 7 7 C 1.53119 * 109.50495 * 59.99423 * 5 2 1 8 8 C 1.53120 * 109.15662 * 182.36540 * 7 5 2 9 9 C 1.53037 * 109.31068 * 57.63679 * 8 7 5 10 10 N 1.46849 * 109.52243 * 300.87818 * 9 8 7 11 11 C 1.46905 * 110.99596 * 185.80473 * 10 9 8 12 12 C 1.52994 * 109.47185 * 85.25750 * 11 10 9 13 13 C 1.53002 * 109.47133 * 294.32535 * 12 11 10 14 14 C 1.52999 * 109.47327 * 54.32482 * 12 11 10 15 15 C 1.53003 * 109.46998 * 174.32757 * 12 11 10 16 16 C 1.50702 * 109.47192 * 179.97438 * 15 12 11 17 17 H 1.08003 * 119.99810 * 359.97438 * 16 15 12 18 18 C 1.37875 * 119.99875 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99800 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47184 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47139 * 120.00185 * 20 18 16 23 23 H 1.48498 * 109.46716 * 240.00114 * 20 18 16 24 24 C 1.46843 * 111.23388 * 61.68232 * 10 9 8 25 25 H 1.09008 * 109.46670 * 300.00279 * 1 2 3 26 26 H 1.09004 * 109.46993 * 59.99493 * 1 2 3 27 27 H 1.08996 * 109.47962 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46861 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46933 * 300.00281 * 3 2 1 30 30 H 1.08998 * 109.46837 * 60.00047 * 3 2 1 31 31 H 1.09004 * 109.47068 * 299.99946 * 4 2 1 32 32 H 1.08993 * 109.47513 * 60.00565 * 4 2 1 33 33 H 1.08999 * 109.47142 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.52078 * 62.46182 * 7 5 2 35 35 H 1.08995 * 109.57346 * 302.30227 * 7 5 2 36 36 H 1.08998 * 109.50212 * 177.59654 * 8 7 5 37 37 H 1.09000 * 109.50599 * 297.67280 * 8 7 5 38 38 H 1.08998 * 109.46579 * 60.85620 * 9 8 7 39 39 H 1.09002 * 109.45947 * 180.82435 * 9 8 7 40 40 H 1.08998 * 109.46785 * 205.25774 * 11 10 9 41 41 H 1.09007 * 109.46899 * 325.25640 * 11 10 9 42 42 H 1.09005 * 109.46969 * 75.17780 * 13 12 11 43 43 H 1.09000 * 109.47182 * 195.17529 * 13 12 11 44 44 H 1.08998 * 109.47198 * 315.17241 * 13 12 11 45 45 H 1.09000 * 109.46941 * 60.00400 * 14 12 11 46 46 H 1.09008 * 109.47143 * 179.97438 * 14 12 11 47 47 H 1.08990 * 109.47510 * 300.00013 * 14 12 11 48 48 H 1.09000 * 109.46868 * 299.99806 * 15 12 11 49 49 H 1.08998 * 109.47384 * 59.99941 * 15 12 11 50 50 H 0.96995 * 120.00451 * 180.02562 * 19 18 16 51 51 H 1.08997 * 109.46373 * 178.25923 * 24 10 9 52 52 H 1.08996 * 109.46271 * 58.29195 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0398 -0.7213 -1.2493 5 6 2.0399 -0.7214 1.2492 6 1 3.1299 -0.7213 1.2500 7 6 1.5298 -2.1651 1.2499 8 6 1.9952 -2.8619 2.5315 9 6 1.4844 -2.0824 3.7454 10 7 1.9997 -0.7081 3.6984 11 6 1.6430 0.0297 4.9176 12 6 2.6840 -0.2471 6.0041 13 6 2.6203 -1.7216 6.4076 14 6 4.0799 0.0747 5.4669 15 6 2.3927 0.6286 7.2245 16 6 3.4177 0.3555 8.2950 17 1 4.1985 -0.3704 8.1223 18 6 3.3586 1.0323 9.4947 19 7 2.4075 1.9159 9.7051 20 14 4.6295 0.6943 10.8214 21 1 5.5852 -0.3356 10.3404 22 1 5.3652 1.9461 11.1325 23 1 3.9481 0.2031 12.0459 24 6 1.5271 -0.0036 2.4998 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 3.1301 1.4423 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6764 -1.7490 -1.2493 32 1 1.6766 -0.2075 -2.1393 33 1 3.1298 -0.7217 -1.2492 34 1 1.9282 -2.6926 0.3832 35 1 0.4406 -2.1676 1.2088 36 1 1.5994 -3.8771 2.5580 37 1 3.0845 -2.8954 2.5525 38 1 0.3947 -2.0618 3.7315 39 1 1.8267 -2.5682 4.6591 40 1 1.6184 1.0978 4.7018 41 1 0.6614 -0.2938 5.2640 42 1 3.0825 -2.3311 5.6310 43 1 3.1539 -1.8645 7.3473 44 1 1.5793 -2.0196 6.5320 45 1 4.1253 1.1252 5.1795 46 1 4.8216 -0.1221 6.2412 47 1 4.2875 -0.5491 4.5976 48 1 2.4381 1.6790 6.9370 49 1 1.3982 0.3993 7.6072 50 1 2.3661 2.3923 10.5490 51 1 1.9002 1.0204 2.5096 52 1 0.4372 0.0072 2.4909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000475613177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:51 Heat of formation + Delta-G solvation = -32.079525 kcal Electronic energy + Delta-G solvation = -24124.800837 eV Core-core repulsion = 21122.834655 eV Total energy + Delta-G solvation = -3001.966182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.93341 -37.58012 -35.30768 -32.71187 -31.78271 -29.76102 -27.73264 -27.46746 -26.89407 -26.40142 -25.81641 -23.31359 -23.09155 -21.92482 -19.93360 -18.45927 -17.68424 -16.16104 -15.86996 -15.11170 -14.79498 -14.51744 -14.46135 -14.15893 -13.79907 -13.69214 -13.57481 -12.86033 -12.74947 -12.65088 -12.39896 -12.15983 -11.97763 -11.95114 -11.85676 -11.60919 -11.47637 -11.14285 -11.02306 -10.82619 -10.75030 -10.69029 -10.61833 -10.43901 -10.38572 -10.17483 -10.16291 -9.96822 -9.74257 -9.55215 -8.88651 -8.76606 -8.28053 -7.80586 -5.92609 -3.92123 3.34767 3.42571 3.46364 4.19149 4.52436 4.60453 4.69652 4.73204 5.03949 5.10147 5.14119 5.35536 5.43233 5.45623 5.48861 5.53815 5.56607 5.64232 5.67156 5.71277 5.78186 5.79901 5.83403 5.84106 5.94866 5.98451 5.98867 6.08069 6.08885 6.15079 6.15995 6.23000 6.28662 6.34296 6.41069 6.43849 6.53292 6.63402 6.79842 6.88653 6.94033 7.31272 7.33330 7.36917 7.54797 7.60079 7.76719 7.92367 8.08504 8.53721 9.13664 9.70370 11.19163 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.003649 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.242881 B = 7671.755486 C = 7995.940010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.071 4.071 6 H 0.077 0.923 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.038 3.962 10 N -0.529 5.529 11 C 0.067 3.933 12 C -0.051 4.051 13 C -0.132 4.132 14 C -0.113 4.113 15 C 0.033 3.967 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.059 3.941 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.022 0.978 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.030 0.970 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.013 0.987 49 H 0.011 0.989 50 H 0.257 0.743 51 H 0.072 0.928 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 -6.379 -20.439 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.198 4.198 5 C -0.090 4.090 6 H 0.095 0.905 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.089 4.089 10 N -0.253 5.253 11 C -0.061 4.061 12 C -0.052 4.052 13 C -0.189 4.189 14 C -0.170 4.170 15 C -0.005 4.005 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.069 4.069 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.032 0.968 49 H 0.030 0.970 50 H 0.067 0.933 51 H 0.091 0.909 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.474 -6.283 -20.331 21.423 hybrid contribution -0.365 0.061 0.905 0.978 sum -2.839 -6.222 -19.426 20.595 Atomic orbital electron populations 1.21990 0.94993 1.01716 1.01546 1.20529 0.95445 0.95477 0.95005 1.21923 1.01122 0.95415 1.01620 1.21900 1.00944 1.00220 0.96726 1.21174 1.00772 0.94192 0.92827 0.90491 1.21729 1.00436 0.95612 0.97636 1.21581 1.01639 0.97861 0.94327 1.22540 0.96378 0.90214 0.99787 1.61872 1.59711 1.01814 1.01916 1.22314 0.97176 0.97037 0.89531 1.20548 0.94168 0.95940 0.94512 1.21996 0.99820 0.96061 1.01049 1.21562 0.96552 0.99570 0.99313 1.19136 0.96650 0.94025 0.90683 1.21288 1.12186 1.21869 0.98847 0.92193 1.25016 0.95701 0.95437 0.98492 1.69976 1.32875 1.26370 1.24624 0.86624 0.81792 0.78034 0.82092 1.19759 1.21188 1.21237 1.22253 0.97015 0.97748 0.89923 0.92396 0.93122 0.92546 0.92566 0.93070 0.92250 0.92523 0.93051 0.92725 0.92135 0.92296 0.92232 0.91313 0.95991 0.88673 0.91953 0.95161 0.93852 0.91580 0.94659 0.94602 0.92992 0.93600 0.96833 0.97043 0.93282 0.90925 0.95360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.77 37.15 0.29 -1.02 16 2 C -0.06 -0.59 0.57 -154.51 -0.09 -0.68 16 3 C -0.14 -1.34 8.13 37.16 0.30 -1.04 16 4 C -0.14 -1.16 8.12 37.16 0.30 -0.85 16 5 C -0.07 -0.77 1.71 -90.54 -0.15 -0.92 16 6 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.12 -1.20 4.56 -26.61 -0.12 -1.32 16 8 C -0.12 -1.33 6.09 -26.65 -0.16 -1.49 16 9 C 0.04 0.53 4.96 -3.83 -0.02 0.51 16 10 N -0.53 -7.93 3.50 -234.67 -0.82 -8.75 16 11 C 0.07 1.19 4.22 -3.82 -0.02 1.17 16 12 C -0.05 -1.04 0.61 -154.51 -0.09 -1.13 16 13 C -0.13 -2.53 6.88 37.16 0.26 -2.27 16 14 C -0.11 -2.23 7.94 37.16 0.30 -1.94 16 15 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 16 C -0.50 -13.90 7.44 -34.44 -0.26 -14.16 16 17 H 0.06 1.62 5.80 -52.48 -0.30 1.32 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.06 0.76 3.95 -3.83 -0.02 0.74 16 25 H 0.06 0.57 6.41 -51.92 -0.33 0.23 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.50 6.38 -51.93 -0.33 0.17 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.59 6.46 -51.93 -0.34 0.26 16 31 H 0.06 0.45 6.49 -51.93 -0.34 0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 35 H 0.06 0.61 6.32 -51.93 -0.33 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 1.40 3.99 -51.93 -0.21 1.19 16 40 H 0.06 1.13 7.64 -51.93 -0.40 0.73 16 41 H 0.03 0.55 7.77 -51.93 -0.40 0.15 16 42 H 0.04 0.74 6.29 -51.93 -0.33 0.41 16 43 H 0.07 1.40 6.27 -51.93 -0.33 1.07 16 44 H 0.03 0.64 7.59 -51.93 -0.39 0.25 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 1.10 6.62 -51.92 -0.34 0.76 16 47 H 0.04 0.83 7.46 -51.93 -0.39 0.44 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 51 H 0.07 0.98 6.25 -51.93 -0.32 0.65 16 52 H 0.03 0.37 6.38 -51.93 -0.33 0.04 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -28.68 366.79 -9.23 -37.91 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -9.96 Total: -2.83 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 0.31 Total: -22.25 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.08 Total: -35.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.68 -9.23 -37.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475613177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.830 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds