Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46861 * 2 1 4 4 C 1.52994 * 109.47331 * 120.00096 * 2 1 3 5 5 N 1.46900 * 109.47519 * 173.57905 * 4 2 1 6 6 C 1.46893 * 110.99748 * 295.49947 * 5 4 2 7 7 C 1.52999 * 109.47075 * 150.55459 * 6 5 4 8 8 C 1.52998 * 109.47263 * 322.53022 * 7 6 5 9 9 C 1.53002 * 109.47148 * 82.53632 * 7 6 5 10 10 C 1.53009 * 109.47148 * 202.53367 * 7 6 5 11 11 C 1.50698 * 109.46832 * 180.02562 * 10 7 6 12 12 H 1.08001 * 120.00603 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99662 * 180.02562 * 11 10 7 14 14 N 1.31515 * 120.00143 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00194 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46814 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47431 * 119.99392 * 15 13 11 18 18 H 1.48501 * 109.47076 * 239.99968 * 15 13 11 19 19 C 1.46896 * 110.99983 * 171.54102 * 5 4 2 20 20 C 1.54265 * 110.03150 * 57.55121 * 19 5 4 21 21 C 1.54967 * 104.16151 * 217.13403 * 20 19 5 22 22 C 1.54886 * 102.77604 * 37.88304 * 21 20 19 23 23 C 1.53869 * 110.03881 * 300.33139 * 19 5 4 24 24 H 1.08997 * 109.47807 * 299.99789 * 1 2 3 25 25 H 1.09003 * 109.46991 * 60.00087 * 1 2 3 26 26 H 1.08999 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47368 * 240.00829 * 2 1 3 28 28 H 1.08999 * 109.46878 * 64.39270 * 3 2 1 29 29 H 1.09000 * 109.47141 * 184.38819 * 3 2 1 30 30 H 1.08994 * 109.47423 * 304.39202 * 3 2 1 31 31 H 1.08994 * 109.47282 * 53.57591 * 4 2 1 32 32 H 1.09004 * 109.47119 * 293.58095 * 4 2 1 33 33 H 1.09000 * 109.47166 * 270.55455 * 6 5 4 34 34 H 1.09001 * 109.47172 * 30.55398 * 6 5 4 35 35 H 1.09002 * 109.46610 * 60.00329 * 8 7 6 36 36 H 1.08997 * 109.47575 * 179.97438 * 8 7 6 37 37 H 1.08994 * 109.47058 * 300.00393 * 8 7 6 38 38 H 1.08997 * 109.47468 * 43.41664 * 9 7 6 39 39 H 1.09001 * 109.47271 * 163.42417 * 9 7 6 40 40 H 1.08997 * 109.46579 * 283.41718 * 9 7 6 41 41 H 1.09001 * 109.46695 * 299.99906 * 10 7 6 42 42 H 1.08994 * 109.47102 * 59.99651 * 10 7 6 43 43 H 0.96998 * 120.00166 * 180.02562 * 14 13 11 44 44 H 1.08999 * 110.01680 * 178.93796 * 19 5 4 45 45 H 1.09000 * 110.48697 * 335.78130 * 20 19 5 46 46 H 1.09003 * 110.49153 * 98.42336 * 20 19 5 47 47 H 1.08998 * 110.71618 * 279.57518 * 21 20 19 48 48 H 1.08997 * 110.92541 * 156.29988 * 21 20 19 49 49 H 1.08997 * 110.48711 * 203.40705 * 22 21 20 50 50 H 1.09006 * 110.59881 * 80.82138 * 22 21 20 51 51 H 1.08997 * 110.03202 * 238.57197 * 23 19 5 52 52 H 1.09001 * 110.02971 * 0.02562 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5008 -0.8568 1.1743 6 6 3.8926 -1.7178 0.0504 7 6 5.2690 -1.2908 -0.4635 8 6 5.3861 0.2335 -0.4018 9 6 6.3570 -1.9217 0.4078 10 6 5.4403 -1.7572 -1.9107 11 6 6.7962 -1.3371 -2.4166 12 1 7.4684 -0.7916 -1.7708 13 6 7.1783 -1.6482 -3.7043 14 7 6.3596 -2.3120 -4.4909 15 14 8.8593 -1.1282 -4.3313 16 1 9.5840 -0.4000 -3.2590 17 1 9.6352 -2.3318 -4.7244 18 1 8.6949 -0.2388 -5.5091 19 6 4.0482 -1.3620 2.4404 20 6 3.4008 -2.7173 2.7926 21 6 3.2449 -2.6738 4.3337 22 6 2.8542 -1.1984 4.5970 23 6 3.7013 -0.3967 3.5873 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.7422 1.9331 0.9267 29 1 3.1271 1.4436 -0.0786 30 1 1.6138 1.9786 -0.8480 31 1 1.5859 -1.7103 1.3085 32 1 1.7735 -0.1454 2.1355 33 1 3.9351 -2.7545 0.3845 34 1 3.1602 -1.6242 -0.7515 35 1 5.2640 0.5657 0.6292 36 1 6.3668 0.5377 -0.7674 37 1 4.6110 0.6828 -1.0225 38 1 6.1061 -2.9640 0.6044 39 1 7.3139 -1.8699 -0.1115 40 1 6.4260 -1.3804 1.3514 41 1 5.3569 -2.8431 -1.9546 42 1 4.6652 -1.3078 -2.5314 43 1 6.6285 -2.5312 -5.3967 44 1 5.1295 -1.4742 2.3610 45 1 2.4264 -2.8106 2.3132 46 1 4.0525 -3.5397 2.4973 47 1 4.1877 -2.9171 4.8237 48 1 2.4545 -3.3477 4.6642 49 1 3.1070 -0.9132 5.6182 50 1 1.7913 -1.0440 4.4108 51 1 4.6142 -0.0411 4.0650 52 1 3.1263 0.4465 3.2045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507788795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -27.177833 kcal Electronic energy + Delta-G solvation = -24620.968517 eV Core-core repulsion = 21619.214888 eV Total energy + Delta-G solvation = -3001.753629 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.79812 -36.69560 -35.74012 -33.11883 -31.93611 -28.79394 -27.75414 -27.16380 -26.95339 -26.06400 -25.91898 -23.90076 -22.31019 -20.76790 -19.99721 -18.88803 -17.61637 -16.14634 -15.96734 -15.91361 -14.97882 -14.61516 -14.38331 -14.24737 -13.52968 -13.40507 -13.23518 -13.02673 -12.51504 -12.40960 -12.10984 -12.02263 -11.91766 -11.85949 -11.48152 -11.14535 -11.06393 -11.02517 -10.93972 -10.86993 -10.78023 -10.69314 -10.59668 -10.47524 -10.40094 -10.25796 -10.12984 -9.98563 -9.80500 -9.48402 -8.86411 -8.76364 -8.26883 -7.73759 -5.91693 -3.90950 3.35111 3.43020 3.46656 4.20278 4.53121 4.65080 4.73220 4.92111 5.01394 5.16551 5.33933 5.44281 5.44479 5.49294 5.57267 5.58053 5.64862 5.67332 5.78458 5.81770 5.82005 5.87564 5.90040 5.94450 5.99612 6.05861 6.08915 6.13827 6.15960 6.26765 6.29084 6.34567 6.38896 6.44518 6.45248 6.62127 6.65028 6.68460 6.83643 6.92753 7.00819 7.34150 7.40152 7.41285 7.57879 7.62215 7.78186 7.95621 8.09642 8.54991 9.14880 9.71469 11.20007 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.004918 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.576371 B = 5692.350231 C = 6509.212129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.141 4.141 4 C 0.056 3.944 5 N -0.518 5.518 6 C 0.058 3.942 7 C -0.051 4.051 8 C -0.108 4.108 9 C -0.133 4.133 10 C 0.034 3.966 11 C -0.503 4.503 12 H 0.059 0.941 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.074 3.926 20 C -0.160 4.160 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.120 4.120 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.010 0.990 42 H 0.014 0.986 43 H 0.257 0.743 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.062 0.938 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 2.877 15.910 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.198 4.198 4 C -0.071 4.071 5 N -0.240 5.240 6 C -0.069 4.069 7 C -0.052 4.052 8 C -0.165 4.165 9 C -0.190 4.190 10 C -0.004 4.004 11 C -0.541 4.541 12 H 0.077 0.923 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.035 4.035 20 C -0.199 4.199 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.158 4.158 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.028 0.972 42 H 0.032 0.968 43 H 0.067 0.933 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.567 3.290 15.646 18.633 hybrid contribution 0.508 -0.746 -0.413 0.992 sum -9.060 2.545 15.233 17.905 Atomic orbital electron populations 1.21814 0.95896 1.01163 1.01384 1.21197 0.94360 0.97465 0.98614 1.21803 1.03204 0.94733 1.00029 1.22215 0.88705 0.98146 0.98072 1.62325 1.09067 1.49819 1.02750 1.22473 0.98725 0.93506 0.92209 1.20553 0.91154 0.95906 0.97563 1.21574 1.00426 0.94905 0.99627 1.21995 1.00847 0.98202 0.97964 1.19143 0.96766 0.95890 0.88558 1.21289 1.00862 1.34740 0.97209 0.92259 1.25008 0.96854 0.95555 0.97183 1.69977 1.35766 1.40532 1.07562 0.86644 0.84898 0.78237 0.78871 1.19785 1.21265 1.21215 1.22617 1.00538 0.91232 0.89086 1.23085 1.01443 0.99463 0.95911 1.22418 1.00907 0.96410 0.96118 1.22371 0.99652 0.95359 0.98853 1.22242 0.99810 0.98552 0.95170 0.93139 0.92738 0.93217 0.90545 0.93822 0.90472 0.93876 0.95426 0.91115 0.94979 0.91327 0.93555 0.93522 0.94087 0.94732 0.91440 0.94518 0.97165 0.96814 0.93317 0.88581 0.91339 0.91808 0.91698 0.92230 0.92129 0.92109 0.91882 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.10 -1.26 2.85 -90.62 -0.26 -1.52 16 3 C -0.14 -1.83 9.04 37.16 0.34 -1.49 16 4 C 0.06 0.71 3.52 -3.83 -0.01 0.70 16 5 N -0.52 -7.29 2.33 -225.33 -0.52 -7.82 16 6 C 0.06 0.99 4.17 -3.83 -0.02 0.97 16 7 C -0.05 -1.01 0.65 -154.50 -0.10 -1.11 16 8 C -0.11 -2.08 7.02 37.16 0.26 -1.82 16 9 C -0.13 -2.52 7.70 37.16 0.29 -2.23 16 10 C 0.03 0.85 3.93 -27.88 -0.11 0.74 16 11 C -0.50 -13.78 7.41 -34.44 -0.26 -14.03 16 12 H 0.06 1.59 5.82 -52.49 -0.31 1.29 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C 0.07 0.95 2.87 -66.60 -0.19 0.76 16 20 C -0.16 -1.92 5.02 -25.03 -0.13 -2.05 16 21 C -0.12 -1.21 6.91 -24.70 -0.17 -1.39 16 22 C -0.12 -1.20 6.83 -25.08 -0.17 -1.37 16 23 C -0.12 -1.33 5.84 -25.62 -0.15 -1.48 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.16 6.00 -51.93 -0.31 0.85 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.14 5.65 -51.93 -0.29 0.85 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.36 6.21 -51.93 -0.32 0.04 16 32 H 0.07 0.84 6.09 -51.93 -0.32 0.52 16 33 H 0.03 0.55 6.28 -51.93 -0.33 0.23 16 34 H 0.07 1.24 5.44 -51.93 -0.28 0.96 16 35 H 0.05 0.81 7.21 -51.93 -0.37 0.43 16 36 H 0.05 0.98 6.62 -51.93 -0.34 0.63 16 37 H 0.04 0.80 6.66 -51.93 -0.35 0.45 16 38 H 0.03 0.62 7.73 -51.93 -0.40 0.22 16 39 H 0.07 1.42 6.26 -51.93 -0.32 1.10 16 40 H 0.04 0.61 5.87 -51.93 -0.30 0.31 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.01 0.37 8.12 -51.93 -0.42 -0.05 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.10 1.38 4.85 -51.93 -0.25 1.12 16 45 H 0.07 0.86 5.68 -51.93 -0.29 0.56 16 46 H 0.06 0.82 8.01 -51.93 -0.42 0.40 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.07 0.86 6.41 -51.93 -0.33 0.53 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -28.14 367.64 -9.46 -37.60 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -9.75 Total: -0.70 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -0.43 Total: -25.10 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.21 Total: -34.07 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.14 -9.46 -37.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507788795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.422 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds