Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46861 * 2 1 4 4 C 1.52994 * 109.47331 * 120.00096 * 2 1 3 5 5 N 1.46900 * 109.47519 * 173.57905 * 4 2 1 6 6 C 1.46893 * 110.99748 * 295.49947 * 5 4 2 7 7 C 1.52999 * 109.47075 * 150.55459 * 6 5 4 8 8 C 1.52998 * 109.47263 * 322.53022 * 7 6 5 9 9 C 1.53002 * 109.47148 * 82.53632 * 7 6 5 10 10 C 1.53009 * 109.47148 * 202.53367 * 7 6 5 11 11 C 1.50698 * 109.46832 * 180.02562 * 10 7 6 12 12 H 1.08001 * 120.00603 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99662 * 180.02562 * 11 10 7 14 14 N 1.31515 * 120.00143 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00194 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46814 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47431 * 119.99392 * 15 13 11 18 18 H 1.48501 * 109.47076 * 239.99968 * 15 13 11 19 19 C 1.46896 * 110.99983 * 171.54102 * 5 4 2 20 20 C 1.54265 * 110.03150 * 57.55121 * 19 5 4 21 21 C 1.54967 * 104.16151 * 217.13403 * 20 19 5 22 22 C 1.54886 * 102.77604 * 37.88304 * 21 20 19 23 23 C 1.53869 * 110.03881 * 300.33139 * 19 5 4 24 24 H 1.08997 * 109.47807 * 299.99789 * 1 2 3 25 25 H 1.09003 * 109.46991 * 60.00087 * 1 2 3 26 26 H 1.08999 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47368 * 240.00829 * 2 1 3 28 28 H 1.08999 * 109.46878 * 64.39270 * 3 2 1 29 29 H 1.09000 * 109.47141 * 184.38819 * 3 2 1 30 30 H 1.08994 * 109.47423 * 304.39202 * 3 2 1 31 31 H 1.08994 * 109.47282 * 53.57591 * 4 2 1 32 32 H 1.09004 * 109.47119 * 293.58095 * 4 2 1 33 33 H 1.09000 * 109.47166 * 270.55455 * 6 5 4 34 34 H 1.09001 * 109.47172 * 30.55398 * 6 5 4 35 35 H 1.09002 * 109.46610 * 60.00329 * 8 7 6 36 36 H 1.08997 * 109.47575 * 179.97438 * 8 7 6 37 37 H 1.08994 * 109.47058 * 300.00393 * 8 7 6 38 38 H 1.08997 * 109.47468 * 43.41664 * 9 7 6 39 39 H 1.09001 * 109.47271 * 163.42417 * 9 7 6 40 40 H 1.08997 * 109.46579 * 283.41718 * 9 7 6 41 41 H 1.09001 * 109.46695 * 299.99906 * 10 7 6 42 42 H 1.08994 * 109.47102 * 59.99651 * 10 7 6 43 43 H 0.96998 * 120.00166 * 180.02562 * 14 13 11 44 44 H 1.08999 * 110.01680 * 178.93796 * 19 5 4 45 45 H 1.09000 * 110.48697 * 335.78130 * 20 19 5 46 46 H 1.09003 * 110.49153 * 98.42336 * 20 19 5 47 47 H 1.08998 * 110.71618 * 279.57518 * 21 20 19 48 48 H 1.08997 * 110.92541 * 156.29988 * 21 20 19 49 49 H 1.08997 * 110.48711 * 203.40705 * 22 21 20 50 50 H 1.09006 * 110.59881 * 80.82138 * 22 21 20 51 51 H 1.08997 * 110.03202 * 238.57197 * 23 19 5 52 52 H 1.09001 * 110.02971 * 0.02562 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5008 -0.8568 1.1743 6 6 3.8926 -1.7178 0.0504 7 6 5.2690 -1.2908 -0.4635 8 6 5.3861 0.2335 -0.4018 9 6 6.3570 -1.9217 0.4078 10 6 5.4403 -1.7572 -1.9107 11 6 6.7962 -1.3371 -2.4166 12 1 7.4684 -0.7916 -1.7708 13 6 7.1783 -1.6482 -3.7043 14 7 6.3596 -2.3120 -4.4909 15 14 8.8593 -1.1282 -4.3313 16 1 9.5840 -0.4000 -3.2590 17 1 9.6352 -2.3318 -4.7244 18 1 8.6949 -0.2388 -5.5091 19 6 4.0482 -1.3620 2.4404 20 6 3.4008 -2.7173 2.7926 21 6 3.2449 -2.6738 4.3337 22 6 2.8542 -1.1984 4.5970 23 6 3.7013 -0.3967 3.5873 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.7422 1.9331 0.9267 29 1 3.1271 1.4436 -0.0786 30 1 1.6138 1.9786 -0.8480 31 1 1.5859 -1.7103 1.3085 32 1 1.7735 -0.1454 2.1355 33 1 3.9351 -2.7545 0.3845 34 1 3.1602 -1.6242 -0.7515 35 1 5.2640 0.5657 0.6292 36 1 6.3668 0.5377 -0.7674 37 1 4.6110 0.6828 -1.0225 38 1 6.1061 -2.9640 0.6044 39 1 7.3139 -1.8699 -0.1115 40 1 6.4260 -1.3804 1.3514 41 1 5.3569 -2.8431 -1.9546 42 1 4.6652 -1.3078 -2.5314 43 1 6.6285 -2.5312 -5.3967 44 1 5.1295 -1.4742 2.3610 45 1 2.4264 -2.8106 2.3132 46 1 4.0525 -3.5397 2.4973 47 1 4.1877 -2.9171 4.8237 48 1 2.4545 -3.3477 4.6642 49 1 3.1070 -0.9132 5.6182 50 1 1.7913 -1.0440 4.4108 51 1 4.6142 -0.0411 4.0650 52 1 3.1263 0.4465 3.2045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507788795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -39.463110 kcal Electronic energy + Delta-G solvation = -24621.501246 eV Core-core repulsion = 21619.214888 eV Total energy + Delta-G solvation = -3002.286358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93932 -38.05041 -36.92690 -34.73905 -33.59774 -29.70307 -29.12551 -28.79872 -28.07559 -27.49449 -27.26341 -25.47235 -23.90476 -21.63496 -20.99099 -20.12988 -19.08894 -18.29117 -17.08260 -16.96782 -16.44387 -15.99254 -15.60511 -15.47052 -14.91828 -14.68564 -14.52392 -14.29441 -14.04162 -13.77636 -13.59468 -13.40961 -13.16854 -12.93051 -12.82254 -12.61672 -12.48479 -12.38136 -12.28175 -12.08479 -11.98849 -11.90958 -11.83466 -11.77745 -11.72421 -11.62510 -11.37597 -11.27825 -11.21096 -11.01935 -10.74127 -10.55671 -10.48718 -8.92197 -8.12343 -6.18698 1.39707 1.40770 1.52972 2.44461 3.07744 3.21471 3.76303 3.84678 3.94029 4.06952 4.14943 4.21486 4.31698 4.36812 4.46235 4.56330 4.61672 4.66958 4.69886 4.75649 4.79252 4.84334 4.89823 4.90283 4.92985 4.97504 5.05021 5.05813 5.11682 5.12169 5.15066 5.17880 5.24255 5.27520 5.32558 5.36050 5.41434 5.46627 5.50774 5.54528 5.55844 5.59760 5.65505 5.73653 5.79297 5.94796 5.98170 6.30162 6.44303 6.46106 6.96582 7.48208 9.00122 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.004918 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.576371 B = 5692.350231 C = 6509.212129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 C -0.136 4.136 4 C 0.062 3.938 5 N -0.517 5.517 6 C 0.072 3.928 7 C -0.046 4.046 8 C -0.094 4.094 9 C -0.124 4.124 10 C 0.042 3.958 11 C -0.509 4.509 12 H 0.064 0.936 13 C -0.004 4.004 14 N -0.938 5.938 15 Si 0.954 3.046 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.070 3.930 20 C -0.159 4.159 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.115 4.115 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.043 0.957 40 H 0.063 0.937 41 H -0.021 1.021 42 H -0.018 1.018 43 H 0.259 0.741 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 3.952 18.398 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.193 4.193 4 C -0.065 4.065 5 N -0.239 5.239 6 C -0.056 4.056 7 C -0.047 4.047 8 C -0.151 4.151 9 C -0.181 4.181 10 C 0.005 3.995 11 C -0.547 4.547 12 H 0.082 0.918 13 C -0.200 4.200 14 N -0.580 5.580 15 Si 0.780 3.220 16 H -0.185 1.185 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.039 4.039 20 C -0.198 4.198 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.153 4.153 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.082 0.918 41 H -0.003 1.003 42 H 0.000 1.000 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.773 4.373 18.156 21.078 hybrid contribution 0.533 -1.098 -1.190 1.704 sum -9.240 3.275 16.966 19.595 Atomic orbital electron populations 1.21758 0.94047 1.01619 1.02277 1.21183 0.95934 0.97149 0.97485 1.21745 1.01760 0.94866 1.00964 1.22218 0.87386 0.98371 0.98533 1.62250 1.10383 1.48843 1.02458 1.22131 0.96612 0.93754 0.93097 1.20405 0.93420 0.96431 0.94412 1.21437 0.98874 0.94094 1.00686 1.21886 0.98904 0.98734 0.98581 1.19012 0.95099 0.93591 0.91817 1.21637 1.01598 1.34093 0.97387 0.91772 1.25896 1.00838 0.95691 0.97617 1.70118 1.37918 1.41995 1.07971 0.85559 0.80149 0.77941 0.78401 1.18510 1.20833 1.20858 1.22668 0.99701 0.92483 0.89002 1.23037 1.00677 0.98410 0.97685 1.22404 1.01552 0.97201 0.94226 1.22344 0.99641 0.94397 0.99194 1.22206 1.00420 0.98062 0.94609 0.91399 0.92677 0.93013 0.93631 0.92047 0.92528 0.93875 0.95440 0.89248 0.95373 0.92870 0.91226 0.95471 0.94946 0.94512 0.93811 0.91793 1.00251 0.99974 0.93258 0.89978 0.91840 0.93106 0.91325 0.91236 0.90578 0.91554 0.91319 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 2 C -0.10 -2.49 2.85 -10.79 -0.03 -2.52 16 3 C -0.14 -3.39 9.04 71.98 0.65 -2.74 16 4 C 0.06 1.48 3.52 86.30 0.30 1.78 16 5 N -0.52 -14.11 2.33 -866.80 -2.02 -16.12 16 6 C 0.07 2.51 4.17 86.30 0.36 2.87 16 7 C -0.05 -1.87 0.65 -52.18 -0.03 -1.90 16 8 C -0.09 -3.62 7.02 71.98 0.51 -3.11 16 9 C -0.12 -4.69 7.70 71.98 0.55 -4.14 16 10 C 0.04 2.24 3.93 29.85 0.12 2.36 16 11 C -0.51 -28.68 7.41 25.60 0.19 -28.49 16 12 H 0.06 3.50 5.82 -2.91 -0.02 3.48 16 13 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 14 N -0.94 -58.21 13.29 21.45 0.28 -57.93 16 15 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 19 C 0.07 1.67 2.87 45.64 0.13 1.80 16 20 C -0.16 -3.58 5.02 31.70 0.16 -3.42 16 21 C -0.12 -2.01 6.91 31.91 0.22 -1.79 16 22 C -0.12 -1.85 6.83 31.67 0.22 -1.63 16 23 C -0.12 -2.20 5.84 31.32 0.18 -2.02 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 1.44 6.00 -2.39 -0.01 1.42 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.64 5.65 -2.39 -0.01 1.63 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.03 0.67 6.21 -2.39 -0.01 0.66 16 32 H 0.09 1.84 6.09 -2.38 -0.01 1.82 16 33 H 0.03 0.99 6.28 -2.39 -0.01 0.98 16 34 H 0.05 2.02 5.44 -2.39 -0.01 2.01 16 35 H 0.07 2.35 7.21 -2.39 -0.02 2.33 16 36 H 0.03 1.13 6.62 -2.39 -0.02 1.11 16 37 H 0.03 1.28 6.66 -2.39 -0.02 1.26 16 38 H 0.04 1.34 7.73 -2.39 -0.02 1.32 16 39 H 0.04 1.85 6.26 -2.39 -0.01 1.83 16 40 H 0.06 2.06 5.87 -2.39 -0.01 2.05 16 41 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 42 H -0.02 -1.06 8.12 -2.39 -0.02 -1.08 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.08 2.20 4.85 -2.39 -0.01 2.19 16 45 H 0.06 1.49 5.68 -2.39 -0.01 1.48 16 46 H 0.05 1.26 8.01 -2.39 -0.02 1.24 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 51 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.07 1.44 6.41 -2.39 -0.02 1.43 16 Total: -1.00 -62.24 367.64 5.81 -56.43 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.86 Total: 15.27 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 4.65 Total: -44.86 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.73 Total: -74.05 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -62.24 5.81 -56.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507788795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.969 kcal (2) G-P(sol) polarization free energy of solvation -62.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds