Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47186 * 2 1 4 4 H 1.09003 * 109.47090 * 55.00262 * 3 2 1 5 5 C 1.52996 * 109.47341 * 294.99876 * 3 2 1 6 6 C 1.53005 * 109.47238 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46608 * 60.00274 * 6 5 3 8 8 H 1.08998 * 109.47283 * 60.00285 * 7 6 5 9 9 C 1.53005 * 109.46608 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47097 * 299.99813 * 7 6 5 11 11 C 1.52996 * 109.47170 * 175.00061 * 3 2 1 12 12 H 1.08994 * 109.47509 * 59.99976 * 11 3 2 13 13 N 1.46901 * 109.47099 * 300.00024 * 11 3 2 14 14 C 1.46907 * 111.00064 * 154.99922 * 13 11 3 15 15 C 1.52996 * 109.47007 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47350 * 60.00124 * 15 14 13 17 17 C 1.53004 * 109.47302 * 299.99646 * 15 14 13 18 18 C 1.52998 * 109.46929 * 180.02562 * 15 14 13 19 19 C 1.50706 * 109.47348 * 179.97438 * 18 15 14 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 15 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 15 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47483 * 269.99808 * 23 21 19 25 25 H 1.48499 * 109.47134 * 30.00322 * 23 21 19 26 26 H 1.48507 * 109.46904 * 150.00145 * 23 21 19 27 27 H 1.09005 * 109.47281 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47412 * 300.00010 * 1 2 3 29 29 H 1.09002 * 109.46978 * 59.99953 * 1 2 3 30 30 H 1.09005 * 109.46892 * 240.00125 * 2 1 3 31 31 H 1.08994 * 109.47301 * 120.00809 * 2 1 3 32 32 H 1.09002 * 109.47017 * 60.00378 * 5 3 2 33 33 H 1.08998 * 109.47440 * 299.99770 * 5 3 2 34 34 H 1.08998 * 109.47066 * 300.00426 * 6 5 3 35 35 H 1.09000 * 109.47084 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.46460 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47084 * 299.99631 * 9 7 6 38 38 H 1.08998 * 109.47066 * 60.00152 * 9 7 6 39 39 H 1.09003 * 109.47344 * 299.99917 * 10 7 6 40 40 H 1.09007 * 109.46944 * 180.02562 * 10 7 6 41 41 H 1.00902 * 111.00171 * 278.95541 * 13 11 3 42 42 H 1.09000 * 109.46801 * 60.00152 * 14 13 11 43 43 H 1.09002 * 109.46963 * 300.00066 * 14 13 11 44 44 H 1.09002 * 109.47144 * 179.97438 * 16 15 14 45 45 H 1.08995 * 109.46867 * 299.99830 * 16 15 14 46 46 H 1.08994 * 109.47054 * 59.99763 * 16 15 14 47 47 H 1.09000 * 109.47381 * 300.00659 * 17 15 14 48 48 H 1.09005 * 109.46541 * 60.00604 * 17 15 14 49 49 H 1.09001 * 109.47046 * 179.97438 * 17 15 14 50 50 H 1.09001 * 109.47671 * 60.00109 * 18 15 14 51 51 H 1.09006 * 109.47297 * 299.99829 * 18 15 14 52 52 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5692 -1.3070 7 6 3.6697 3.5715 -1.1810 8 1 4.1046 3.0327 -2.0228 9 6 4.1792 5.0142 -1.1813 10 6 4.0744 2.8874 0.1263 11 6 3.5648 1.4443 0.1257 12 1 3.9995 0.9053 -0.7160 13 7 3.9534 0.7875 1.3809 14 6 5.3136 0.2400 1.2895 15 6 5.6816 -0.4351 2.6122 16 6 4.6940 -1.5680 2.8988 17 6 5.6207 0.5930 3.7438 18 6 7.0984 -1.0047 2.5172 19 6 7.4612 -1.6692 3.8203 20 1 6.7523 -1.6833 4.6350 21 6 8.6981 -2.2589 3.9725 22 7 9.5615 -2.2413 2.9806 23 14 9.1480 -3.0818 5.5880 24 1 9.7867 -2.0887 6.4885 25 1 7.9200 -3.6151 6.2307 26 1 10.0949 -4.1961 5.3290 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 0.5490 2.1253 -1.3969 33 1 2.0700 1.5876 -2.1491 34 1 1.7099 4.1080 -0.4652 35 1 1.8569 4.0564 -2.2386 36 1 5.2656 5.0157 -1.0920 37 1 3.8909 5.5011 -2.1130 38 1 3.7443 5.5533 -0.3398 39 1 3.6395 3.4262 0.9682 40 1 5.1607 2.8894 0.2163 41 1 3.8706 1.4215 2.1615 42 1 6.0171 1.0470 1.0849 43 1 5.3569 -0.4928 0.4836 44 1 4.9565 -2.0492 3.8409 45 1 3.6849 -1.1618 2.9666 46 1 4.7374 -2.3003 2.0927 47 1 6.3243 1.4001 3.5396 48 1 4.6115 0.9992 3.8116 49 1 5.8825 0.1119 4.6862 50 1 7.8018 -0.1974 2.3133 51 1 7.1422 -1.7371 1.7110 52 1 9.3280 -1.8137 2.1419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562046225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = -61.869062 kcal Electronic energy + Delta-G solvation = -23725.642987 eV Core-core repulsion = 20722.385034 eV Total energy + Delta-G solvation = -3003.257953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.67093 -37.31022 -34.81240 -33.98486 -32.24971 -30.45005 -28.81096 -26.50381 -26.38357 -26.31071 -24.92593 -23.11370 -22.55745 -21.32188 -20.22609 -20.02031 -18.08430 -16.37907 -15.72604 -15.38789 -14.72838 -14.64502 -14.31245 -13.94356 -13.75669 -13.71191 -13.59901 -13.20895 -12.87722 -12.68634 -12.51898 -12.36815 -12.14696 -11.85572 -11.59702 -11.40741 -11.35271 -11.14838 -11.07572 -11.00123 -10.87130 -10.83032 -10.69947 -10.53273 -10.42580 -10.25225 -10.15783 -10.07862 -9.84016 -9.73053 -9.22310 -8.36149 -8.25022 -7.98627 -6.27065 -3.94541 3.46714 3.50427 3.65723 4.32829 4.51180 4.60383 4.62375 4.83039 4.95088 4.97051 5.21721 5.28780 5.34472 5.38638 5.43331 5.48072 5.50769 5.54942 5.59122 5.61675 5.66682 5.75049 5.77325 5.83988 5.89775 5.92392 5.99177 6.01848 6.03574 6.09265 6.17045 6.19290 6.26165 6.30555 6.34081 6.46939 6.47666 6.57513 6.63306 6.75272 6.79445 7.14876 7.18002 7.23543 7.41577 7.46330 7.61521 7.73594 8.33128 8.56106 8.97996 9.76101 11.12923 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.003718 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.922808 B = 7530.063423 C = 8319.102150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.071 4.071 4 H 0.065 0.935 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.088 4.088 8 H 0.067 0.933 9 C -0.147 4.147 10 C -0.143 4.143 11 C 0.091 3.909 12 H 0.072 0.928 13 N -0.678 5.678 14 C 0.071 3.929 15 C -0.051 4.051 16 C -0.114 4.114 17 C -0.127 4.127 18 C 0.020 3.980 19 C -0.586 4.586 20 H 0.053 0.947 21 C 0.011 3.989 22 N -0.918 5.918 23 Si 1.067 2.933 24 H -0.290 1.290 25 H -0.289 1.289 26 H -0.286 1.286 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.337 0.663 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.037 0.963 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.002 0.998 51 H 0.005 0.995 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.724 11.378 -8.257 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.090 4.090 4 H 0.084 0.916 5 C -0.154 4.154 6 C -0.150 4.150 7 C -0.107 4.107 8 H 0.086 0.914 9 C -0.205 4.205 10 C -0.182 4.182 11 C -0.019 4.019 12 H 0.090 0.910 13 N -0.308 5.308 14 C -0.058 4.058 15 C -0.051 4.051 16 C -0.171 4.171 17 C -0.185 4.185 18 C -0.017 4.017 19 C -0.625 4.625 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.555 5.555 23 Si 0.896 3.104 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.212 1.212 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.156 0.844 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.020 0.980 51 H 0.023 0.977 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.819 9.935 -7.617 20.173 hybrid contribution -0.522 1.744 -0.825 1.999 sum -16.342 11.679 -8.442 21.788 Atomic orbital electron populations 1.21834 0.96898 1.01070 1.01142 1.21459 0.94406 0.96239 1.02951 1.21088 0.94604 0.96257 0.97020 0.91613 1.21651 1.00463 0.95353 0.97922 1.21598 0.95125 0.96961 1.01365 1.21079 0.95695 0.95950 0.98025 0.91410 1.21837 1.00998 0.96215 1.01421 1.22346 1.00970 0.97287 0.97582 1.21595 0.94972 0.91878 0.93454 0.90955 1.60653 1.26489 1.39512 1.04151 1.22111 0.87190 0.97311 0.99179 1.20472 0.97807 0.94882 0.91971 1.21576 0.97179 0.97222 1.01148 1.21753 0.98363 0.98195 1.00153 1.19248 0.90035 0.94921 0.97490 1.22054 1.02410 1.38685 0.99324 0.92899 1.25773 0.93269 0.96396 1.03721 1.70746 1.37239 1.42902 1.04656 0.83564 0.75557 0.76555 0.74673 1.21659 1.21522 1.21166 0.93234 0.93117 0.93233 0.92912 0.89985 0.91833 0.92197 0.92173 0.92386 0.92780 0.92920 0.92840 0.92033 0.92086 0.84353 0.96121 0.91894 0.92695 0.93735 0.94378 0.94317 0.94685 0.91695 0.97995 0.97721 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.11 -1.26 5.32 -26.73 -0.14 -1.40 16 3 C -0.07 -0.74 1.90 -90.63 -0.17 -0.92 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.12 -1.06 4.96 -26.73 -0.13 -1.19 16 6 C -0.11 -0.98 5.20 -26.72 -0.14 -1.12 16 7 C -0.09 -0.85 2.72 -90.62 -0.25 -1.09 16 8 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 9 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 10 C -0.14 -1.58 4.46 -26.71 -0.12 -1.70 16 11 C 0.09 1.10 1.91 -67.69 -0.13 0.97 16 12 H 0.07 0.95 7.80 -51.93 -0.40 0.55 16 13 N -0.68 -9.49 4.61 -106.70 -0.49 -9.98 16 14 C 0.07 1.21 4.45 -3.82 -0.02 1.20 16 15 C -0.05 -1.02 0.60 -154.51 -0.09 -1.11 16 16 C -0.11 -2.24 8.07 37.16 0.30 -1.94 16 17 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 18 C 0.02 0.52 3.35 -27.88 -0.09 0.42 16 19 C -0.59 -16.31 7.65 -34.44 -0.26 -16.58 16 20 H 0.05 1.45 5.68 -52.48 -0.30 1.15 16 21 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 22 N -0.92 -28.39 13.65 55.43 0.76 -27.63 16 23 Si 1.07 25.61 29.90 -169.99 -5.08 20.52 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.08 7.45 -51.93 -0.39 0.69 16 32 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.06 0.76 7.46 -51.93 -0.39 0.37 16 41 H 0.34 4.66 6.51 -39.29 -0.26 4.41 16 42 H 0.02 0.36 7.44 -51.93 -0.39 -0.02 16 43 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 44 H 0.05 1.17 6.62 -51.93 -0.34 0.83 16 45 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 49 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 50 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 51 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 52 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -28.80 380.43 -9.92 -38.72 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -10.48 Total: 1.02 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -0.35 Total: -28.39 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.26 Total: -37.61 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.80 -9.92 -38.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562046225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.152 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds