Wall clock time and date at job start Tue Mar 31 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47186 * 2 1 4 4 H 1.09003 * 109.47090 * 55.00262 * 3 2 1 5 5 C 1.52996 * 109.47341 * 294.99876 * 3 2 1 6 6 C 1.53005 * 109.47238 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46608 * 60.00274 * 6 5 3 8 8 H 1.08998 * 109.47283 * 60.00285 * 7 6 5 9 9 C 1.53005 * 109.46608 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47097 * 299.99813 * 7 6 5 11 11 C 1.52996 * 109.47170 * 175.00061 * 3 2 1 12 12 H 1.08994 * 109.47509 * 59.99976 * 11 3 2 13 13 N 1.46901 * 109.47099 * 300.00024 * 11 3 2 14 14 C 1.46907 * 111.00064 * 154.99922 * 13 11 3 15 15 C 1.52996 * 109.47007 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47350 * 60.00124 * 15 14 13 17 17 C 1.53004 * 109.47302 * 299.99646 * 15 14 13 18 18 C 1.52998 * 109.46929 * 180.02562 * 15 14 13 19 19 C 1.50706 * 109.47348 * 179.97438 * 18 15 14 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 15 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 15 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47483 * 269.99808 * 23 21 19 25 25 H 1.48499 * 109.47134 * 30.00322 * 23 21 19 26 26 H 1.48507 * 109.46904 * 150.00145 * 23 21 19 27 27 H 1.09005 * 109.47281 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47412 * 300.00010 * 1 2 3 29 29 H 1.09002 * 109.46978 * 59.99953 * 1 2 3 30 30 H 1.09005 * 109.46892 * 240.00125 * 2 1 3 31 31 H 1.08994 * 109.47301 * 120.00809 * 2 1 3 32 32 H 1.09002 * 109.47017 * 60.00378 * 5 3 2 33 33 H 1.08998 * 109.47440 * 299.99770 * 5 3 2 34 34 H 1.08998 * 109.47066 * 300.00426 * 6 5 3 35 35 H 1.09000 * 109.47084 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.46460 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47084 * 299.99631 * 9 7 6 38 38 H 1.08998 * 109.47066 * 60.00152 * 9 7 6 39 39 H 1.09003 * 109.47344 * 299.99917 * 10 7 6 40 40 H 1.09007 * 109.46944 * 180.02562 * 10 7 6 41 41 H 1.00902 * 111.00171 * 278.95541 * 13 11 3 42 42 H 1.09000 * 109.46801 * 60.00152 * 14 13 11 43 43 H 1.09002 * 109.46963 * 300.00066 * 14 13 11 44 44 H 1.09002 * 109.47144 * 179.97438 * 16 15 14 45 45 H 1.08995 * 109.46867 * 299.99830 * 16 15 14 46 46 H 1.08994 * 109.47054 * 59.99763 * 16 15 14 47 47 H 1.09000 * 109.47381 * 300.00659 * 17 15 14 48 48 H 1.09005 * 109.46541 * 60.00604 * 17 15 14 49 49 H 1.09001 * 109.47046 * 179.97438 * 17 15 14 50 50 H 1.09001 * 109.47671 * 60.00109 * 18 15 14 51 51 H 1.09006 * 109.47297 * 299.99829 * 18 15 14 52 52 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5692 -1.3070 7 6 3.6697 3.5715 -1.1810 8 1 4.1046 3.0327 -2.0228 9 6 4.1792 5.0142 -1.1813 10 6 4.0744 2.8874 0.1263 11 6 3.5648 1.4443 0.1257 12 1 3.9995 0.9053 -0.7160 13 7 3.9534 0.7875 1.3809 14 6 5.3136 0.2400 1.2895 15 6 5.6816 -0.4351 2.6122 16 6 4.6940 -1.5680 2.8988 17 6 5.6207 0.5930 3.7438 18 6 7.0984 -1.0047 2.5172 19 6 7.4612 -1.6692 3.8203 20 1 6.7523 -1.6833 4.6350 21 6 8.6981 -2.2589 3.9725 22 7 9.5615 -2.2413 2.9806 23 14 9.1480 -3.0818 5.5880 24 1 9.7867 -2.0887 6.4885 25 1 7.9200 -3.6151 6.2307 26 1 10.0949 -4.1961 5.3290 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 0.5490 2.1253 -1.3969 33 1 2.0700 1.5876 -2.1491 34 1 1.7099 4.1080 -0.4652 35 1 1.8569 4.0564 -2.2386 36 1 5.2656 5.0157 -1.0920 37 1 3.8909 5.5011 -2.1130 38 1 3.7443 5.5533 -0.3398 39 1 3.6395 3.4262 0.9682 40 1 5.1607 2.8894 0.2163 41 1 3.8706 1.4215 2.1615 42 1 6.0171 1.0470 1.0849 43 1 5.3569 -0.4928 0.4836 44 1 4.9565 -2.0492 3.8409 45 1 3.6849 -1.1618 2.9666 46 1 4.7374 -2.3003 2.0927 47 1 6.3243 1.4001 3.5396 48 1 4.6115 0.9992 3.8116 49 1 5.8825 0.1119 4.6862 50 1 7.8018 -0.1974 2.3133 51 1 7.1422 -1.7371 1.7110 52 1 9.3280 -1.8137 2.1419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562046225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:41 Heat of formation + Delta-G solvation = -75.422493 kcal Electronic energy + Delta-G solvation = -23726.230708 eV Core-core repulsion = 20722.385034 eV Total energy + Delta-G solvation = -3003.845674 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63846 -38.84427 -35.78542 -35.37416 -34.08841 -31.20329 -30.00015 -28.42035 -27.98115 -27.17278 -26.46823 -24.49932 -23.83479 -22.37098 -21.08525 -20.90630 -19.77251 -18.45647 -16.91329 -16.38200 -15.92345 -15.77495 -15.57041 -15.49915 -15.14807 -14.83219 -14.66750 -14.35005 -14.22529 -13.85234 -13.72786 -13.53702 -13.27254 -13.09786 -12.95990 -12.88706 -12.67002 -12.58362 -12.34166 -12.18739 -12.11534 -11.94735 -11.92172 -11.86069 -11.70864 -11.50643 -11.47484 -11.29249 -11.14805 -11.03367 -10.80949 -10.49382 -10.38815 -9.18203 -8.60566 -6.28369 1.52221 1.61528 1.78260 2.59074 3.21881 3.22722 3.66653 3.80470 3.98701 4.02771 4.10824 4.15131 4.18109 4.27432 4.40553 4.46908 4.52982 4.56850 4.59980 4.64151 4.71384 4.74645 4.81077 4.82921 4.86344 4.89413 4.97963 4.99672 5.04320 5.05681 5.11196 5.12236 5.18329 5.22166 5.28439 5.31375 5.35160 5.37021 5.38828 5.43952 5.49624 5.51118 5.59446 5.63353 5.70007 5.73450 6.07789 6.20922 6.28101 6.55108 6.67081 7.51732 8.79511 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.003718 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.922808 B = 7530.063423 C = 8319.102150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.063 4.063 4 H 0.069 0.931 5 C -0.112 4.112 6 C -0.108 4.108 7 C -0.087 4.087 8 H 0.060 0.940 9 C -0.145 4.145 10 C -0.137 4.137 11 C 0.093 3.907 12 H 0.057 0.943 13 N -0.671 5.671 14 C 0.087 3.913 15 C -0.048 4.048 16 C -0.103 4.103 17 C -0.120 4.120 18 C 0.024 3.976 19 C -0.589 4.589 20 H 0.058 0.942 21 C -0.046 4.046 22 N -0.947 5.947 23 Si 1.115 2.885 24 H -0.274 1.274 25 H -0.268 1.268 26 H -0.287 1.287 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.342 0.658 42 H 0.013 0.987 43 H 0.050 0.950 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.026 0.974 47 H 0.033 0.967 48 H 0.070 0.930 49 H 0.045 0.955 50 H -0.023 1.023 51 H -0.023 1.023 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.126 12.578 -7.702 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.082 4.082 4 H 0.087 0.913 5 C -0.150 4.150 6 C -0.146 4.146 7 C -0.106 4.106 8 H 0.079 0.921 9 C -0.203 4.203 10 C -0.177 4.177 11 C -0.017 4.017 12 H 0.076 0.924 13 N -0.302 5.302 14 C -0.043 4.043 15 C -0.049 4.049 16 C -0.161 4.161 17 C -0.177 4.177 18 C -0.013 4.013 19 C -0.627 4.627 20 H 0.076 0.924 21 C -0.242 4.242 22 N -0.585 5.585 23 Si 0.937 3.063 24 H -0.200 1.200 25 H -0.192 1.192 26 H -0.213 1.213 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.162 0.838 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.088 0.912 49 H 0.064 0.936 50 H -0.005 1.005 51 H -0.004 1.004 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.250 11.156 -7.071 22.528 hybrid contribution 0.207 1.384 -1.056 1.754 sum -18.043 12.540 -8.128 23.428 Atomic orbital electron populations 1.21790 0.95386 1.01395 1.01911 1.21413 0.95725 0.96260 1.01531 1.21027 0.92900 0.96148 0.98132 0.91259 1.21625 1.01289 0.95413 0.96670 1.21570 0.93968 0.96723 1.02307 1.21068 0.96687 0.96209 0.96676 0.92138 1.21814 1.00472 0.95691 1.02277 1.22272 0.99732 0.96764 0.98891 1.21636 0.96268 0.92088 0.91738 0.92425 1.60608 1.23905 1.40216 1.05433 1.21764 0.88929 0.96656 0.96911 1.20372 0.94611 0.95651 0.94234 1.21467 0.98326 0.96644 0.99617 1.21661 1.00367 0.97394 0.98277 1.19180 0.93056 0.93448 0.95637 1.22415 1.02321 1.37791 1.00145 0.92361 1.27322 0.93719 0.96900 1.06246 1.70889 1.38184 1.44602 1.04871 0.82957 0.76231 0.75942 0.71143 1.20025 1.19242 1.21296 0.93218 0.92740 0.92004 0.93706 0.92060 0.90438 0.92610 0.91645 0.91053 0.93624 0.91720 0.92381 0.91407 0.93959 0.83809 0.96915 0.93179 0.94518 0.91048 0.95437 0.94757 0.91168 0.93575 1.00453 1.00444 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.67 71.98 0.70 -1.78 16 2 C -0.11 -2.32 5.32 30.59 0.16 -2.16 16 3 C -0.06 -1.20 1.90 -10.80 -0.02 -1.22 16 4 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.11 -1.76 4.96 30.59 0.15 -1.61 16 6 C -0.11 -1.58 5.20 30.60 0.16 -1.42 16 7 C -0.09 -1.53 2.72 -10.79 -0.03 -1.56 16 8 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 9 C -0.15 -2.30 9.19 71.98 0.66 -1.64 16 10 C -0.14 -2.90 4.46 30.61 0.14 -2.76 16 11 C 0.09 2.13 1.91 44.93 0.09 2.22 16 12 H 0.06 1.52 7.80 -2.39 -0.02 1.50 16 13 N -0.67 -18.12 4.61 -491.49 -2.26 -20.39 16 14 C 0.09 3.02 4.45 86.30 0.38 3.40 16 15 C -0.05 -1.95 0.60 -52.18 -0.03 -1.98 16 16 C -0.10 -4.01 8.07 71.98 0.58 -3.43 16 17 C -0.12 -4.41 7.89 71.98 0.57 -3.84 16 18 C 0.02 1.28 3.35 29.85 0.10 1.38 16 19 C -0.59 -33.34 7.65 25.60 0.20 -33.14 16 20 H 0.06 3.19 5.68 -2.91 -0.02 3.18 16 21 C -0.05 -2.69 5.46 84.65 0.46 -2.23 16 22 N -0.95 -60.27 13.65 21.45 0.29 -59.97 16 23 Si 1.12 51.40 29.90 68.60 2.05 53.45 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.89 6.57 -2.39 -0.02 0.87 16 30 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 1.53 7.45 -2.39 -0.02 1.51 16 32 H 0.08 1.04 6.57 -2.39 -0.02 1.03 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 40 H 0.04 1.05 7.46 -2.38 -0.02 1.03 16 41 H 0.34 8.75 6.51 -89.69 -0.58 8.17 16 42 H 0.01 0.46 7.44 -2.39 -0.02 0.44 16 43 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 44 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 45 H 0.07 2.38 7.60 -2.39 -0.02 2.36 16 46 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 2.08 6.57 -2.38 -0.02 2.06 16 49 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 50 H -0.02 -1.30 8.01 -2.39 -0.02 -1.32 16 51 H -0.02 -1.31 8.01 -2.38 -0.02 -1.33 16 52 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 Total: -1.00 -63.46 380.43 4.69 -58.77 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.35 Total: 19.92 kcal Atomic # 6 Polarization: -56.04 SS G_CDS: 4.26 Total: -51.77 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -1.97 Total: -80.36 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -63.46 4.69 -58.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562046225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.655 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds