Wall clock time and date at job start Tue Mar 31 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 C 1.52999 * 109.46998 * 239.99561 * 2 1 3 5 5 C 1.50696 * 109.46832 * 60.00438 * 4 2 1 6 6 H 1.07998 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99921 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00032 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00096 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46922 * 60.00288 * 9 7 5 11 11 H 1.48506 * 109.47152 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46996 * 299.99956 * 9 7 5 13 13 C 1.53006 * 109.46872 * 120.00180 * 2 1 3 14 14 N 1.46902 * 109.46861 * 299.99407 * 13 2 1 15 15 C 1.46900 * 110.99950 * 179.97438 * 14 13 2 16 16 C 1.52995 * 109.47190 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47154 * 180.02562 * 16 15 14 18 18 C 1.54065 * 108.87686 * 297.97781 * 17 16 15 19 19 C 1.54066 * 112.81762 * 197.50425 * 18 17 16 20 20 C 1.50470 * 112.49875 * 318.28617 * 19 18 17 21 21 C 1.54246 * 108.51998 * 94.14981 * 20 19 18 22 22 C 1.45537 * 112.40731 * 280.01038 * 21 20 19 23 23 C 1.50473 * 108.87636 * 175.00284 * 17 16 15 24 24 H 1.09001 * 109.46691 * 300.00465 * 1 2 3 25 25 H 1.09000 * 109.46930 * 60.00039 * 1 2 3 26 26 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47204 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47060 * 299.99881 * 3 2 1 29 29 H 1.08998 * 109.46751 * 59.99764 * 3 2 1 30 30 H 1.08998 * 109.47195 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47516 * 300.00560 * 4 2 1 32 32 H 0.96997 * 120.00069 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46846 * 179.97438 * 13 2 1 34 34 H 1.08995 * 109.47264 * 59.99428 * 13 2 1 35 35 H 1.00907 * 110.99818 * 56.04869 * 14 13 2 36 36 H 1.08999 * 109.46766 * 60.00088 * 15 14 13 37 37 H 1.08998 * 109.47149 * 300.00249 * 15 14 13 38 38 H 1.09009 * 109.47084 * 60.00242 * 16 15 14 39 39 H 1.08995 * 109.47404 * 300.00698 * 16 15 14 40 40 H 1.09002 * 108.85122 * 56.44317 * 17 16 15 41 41 H 1.09005 * 108.81720 * 318.36964 * 18 17 16 42 42 H 1.09004 * 108.81387 * 76.75211 * 18 17 16 43 43 H 1.08997 * 108.87949 * 197.51000 * 19 18 17 44 44 H 1.09001 * 108.87760 * 79.06417 * 19 18 17 45 45 H 1.09003 * 109.63195 * 334.43897 * 20 19 18 46 46 H 1.09001 * 109.62960 * 213.85940 * 20 19 18 47 47 H 1.09001 * 108.89247 * 40.76541 * 21 20 19 48 48 H 1.09004 * 108.89281 * 159.35535 * 21 20 19 49 49 H 1.09000 * 108.89458 * 182.68905 * 22 21 20 50 50 H 1.08995 * 108.89787 * 301.28165 * 22 21 20 51 51 H 1.09006 * 109.62936 * 95.21889 * 23 17 16 52 52 H 1.08998 * 109.78811 * 334.73404 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5511 -3.8526 9 14 1.2480 0.3984 -5.2572 10 1 1.7421 1.7988 -5.2571 11 1 1.7431 -0.3016 -6.4697 12 1 -0.2370 0.3974 -5.2573 13 6 2.0400 -0.7213 1.2493 14 7 1.5504 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6704 16 6 1.4924 0.0534 4.8955 17 6 1.9829 -0.6404 6.1679 18 6 1.4192 -2.0738 6.2030 19 6 1.4843 -2.7072 7.6059 20 6 2.7798 -2.4113 8.3118 21 6 2.5815 -1.1641 9.1974 22 6 2.6599 0.0744 8.4370 23 6 1.5599 0.1740 7.3604 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7218 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 2.8615 -1.8825 -4.7335 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2493 35 1 0.5438 0.0414 2.4402 36 1 3.1107 -0.6955 3.6873 37 1 1.6569 -1.7225 3.6869 38 1 0.4024 0.0541 4.8787 39 1 1.8566 1.0806 4.8787 40 1 3.0714 -0.6915 6.1439 41 1 0.3798 -2.0509 5.8755 42 1 1.9912 -2.6934 5.5124 43 1 1.3734 -3.7873 7.5107 44 1 0.6599 -2.3215 8.2056 45 1 3.5614 -2.2181 7.5769 46 1 3.0603 -3.2612 8.9339 47 1 1.6040 -1.2230 9.6762 48 1 3.3518 -1.1526 9.9685 49 1 2.5605 0.9162 9.1223 50 1 3.6338 0.1289 7.9506 51 1 0.6229 -0.2170 7.7572 52 1 1.4272 1.2155 7.0677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565089837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:28 Heat of formation + Delta-G solvation = -55.197352 kcal Electronic energy + Delta-G solvation = -22721.855361 eV Core-core repulsion = 19718.886715 eV Total energy + Delta-G solvation = -3002.968646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.49523 -37.64036 -35.34427 -33.20912 -32.51493 -31.99002 -28.68017 -26.86004 -26.29174 -25.42093 -25.07007 -23.66938 -22.14716 -21.59439 -20.70171 -19.18731 -17.77655 -16.22027 -15.93915 -15.77399 -15.13257 -14.94930 -14.66943 -14.21083 -14.04205 -13.84444 -13.50902 -13.21008 -12.91042 -12.73208 -12.56981 -12.29133 -12.15952 -11.96770 -11.90201 -11.48241 -11.12992 -10.99974 -10.92961 -10.84701 -10.81325 -10.75873 -10.61047 -10.46330 -10.42276 -10.35312 -10.30835 -10.19339 -10.05621 -9.63860 -8.97265 -8.79811 -8.28947 -8.00148 -5.93595 -3.93663 3.36402 3.40841 3.43177 4.30608 4.39442 4.44363 4.51926 4.69701 4.85754 4.92641 4.99622 5.08587 5.13592 5.18928 5.26559 5.41931 5.45196 5.51448 5.60023 5.70346 5.71099 5.76842 5.81986 5.82911 5.89402 5.92519 5.95062 5.97663 6.01751 6.05408 6.08744 6.13239 6.17194 6.28192 6.33181 6.37488 6.39264 6.55619 6.70521 6.83344 6.86598 7.24724 7.28400 7.30174 7.47385 7.72192 7.76818 7.89464 8.06866 8.51458 9.11549 9.68845 11.18090 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.042661 B = 0.002512 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.178771 B =11145.230231 C =11389.022879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.115 4.115 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.688 5.688 15 C 0.056 3.944 16 C -0.113 4.113 17 C -0.084 4.084 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.112 4.112 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.336 0.664 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.062 0.938 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 0.485 25.221 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.058 4.058 14 N -0.320 5.320 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.103 4.103 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.149 4.149 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.228 0.826 25.081 25.125 hybrid contribution -0.801 -0.527 -0.999 1.385 sum -2.030 0.300 24.082 24.169 Atomic orbital electron populations 1.21767 0.96148 1.00307 1.00377 1.20624 0.94681 0.96118 0.94448 1.21592 0.99737 0.95839 1.00114 1.19123 0.96099 0.94966 0.90222 1.21204 1.30753 1.11889 0.90627 0.92356 1.25023 0.95437 0.95137 0.99046 1.69958 1.37293 1.23200 1.23363 0.86722 0.79132 0.79827 0.82688 1.20308 1.21461 1.20374 1.22090 0.99678 0.94589 0.89477 1.60582 1.16157 1.53880 1.01381 1.22004 1.00229 0.95236 0.89847 1.21759 1.00434 0.99830 0.93039 1.20939 1.00617 0.94271 0.94429 1.22016 1.01064 0.95535 0.96421 1.21342 0.97806 1.00025 0.96428 1.21348 0.98172 0.97342 0.98729 1.20489 1.01620 0.95083 0.98226 1.20488 0.99418 0.97623 0.98112 1.21406 0.98455 0.99910 0.95160 0.94804 0.91757 0.94169 0.94233 0.92750 0.93895 0.96710 0.96965 0.93131 0.91736 0.96065 0.84505 0.91583 0.95670 0.92374 0.91162 0.91333 0.92305 0.92171 0.92595 0.92302 0.91510 0.92287 0.92380 0.92669 0.92561 0.92135 0.91882 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.89 37.16 0.29 -2.14 16 2 C -0.06 -1.19 0.60 -154.50 -0.09 -1.28 16 3 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 4 C 0.03 0.86 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -14.02 7.65 -34.44 -0.26 -14.29 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.26 4.65 -3.82 -0.02 1.24 16 14 N -0.69 -10.26 5.71 -113.78 -0.65 -10.91 16 15 C 0.06 0.70 5.40 -3.83 -0.02 0.68 16 16 C -0.11 -1.16 4.68 -26.73 -0.13 -1.28 16 17 C -0.08 -0.73 1.71 -91.32 -0.16 -0.89 16 18 C -0.11 -0.98 4.42 -25.62 -0.11 -1.09 16 19 C -0.12 -0.91 5.31 -27.44 -0.15 -1.06 16 20 C -0.12 -0.86 5.61 -27.34 -0.15 -1.02 16 21 C -0.12 -0.80 5.26 -29.60 -0.16 -0.96 16 22 C -0.12 -0.86 5.26 -29.60 -0.16 -1.02 16 23 C -0.11 -0.88 5.13 -27.34 -0.14 -1.02 16 24 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 29 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 4.81 6.77 -39.29 -0.27 4.55 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.32 6.83 -51.93 -0.35 -0.04 16 38 H 0.06 0.59 8.08 -51.92 -0.42 0.17 16 39 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 40 H 0.07 0.64 6.62 -51.93 -0.34 0.29 16 41 H 0.06 0.53 7.93 -51.93 -0.41 0.12 16 42 H 0.06 0.56 7.36 -51.93 -0.38 0.18 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.44 6.63 -51.93 -0.34 0.10 16 45 H 0.07 0.53 6.97 -51.93 -0.36 0.17 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.39 7.47 -51.93 -0.39 0.01 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.46 7.46 -51.93 -0.39 0.08 16 51 H 0.06 0.50 6.98 -51.93 -0.36 0.13 16 52 H 0.06 0.52 7.60 -51.93 -0.39 0.12 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -28.73 376.62 -10.75 -39.48 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -10.34 Total: -0.68 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -1.16 Total: -23.93 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.09 Total: -37.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.73 -10.75 -39.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565089837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.716 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds