Wall clock time and date at job start Tue Mar 31 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47375 * 2 1 4 4 C 1.52999 * 109.46998 * 239.99561 * 2 1 3 5 5 C 1.50696 * 109.46832 * 60.00438 * 4 2 1 6 6 H 1.07998 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99921 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00032 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00096 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46922 * 60.00288 * 9 7 5 11 11 H 1.48506 * 109.47152 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46996 * 299.99956 * 9 7 5 13 13 C 1.53006 * 109.46872 * 120.00180 * 2 1 3 14 14 N 1.46902 * 109.46861 * 299.99407 * 13 2 1 15 15 C 1.46900 * 110.99950 * 179.97438 * 14 13 2 16 16 C 1.52995 * 109.47190 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47154 * 180.02562 * 16 15 14 18 18 C 1.54065 * 108.87686 * 297.97781 * 17 16 15 19 19 C 1.54066 * 112.81762 * 197.50425 * 18 17 16 20 20 C 1.50470 * 112.49875 * 318.28617 * 19 18 17 21 21 C 1.54246 * 108.51998 * 94.14981 * 20 19 18 22 22 C 1.45537 * 112.40731 * 280.01038 * 21 20 19 23 23 C 1.50473 * 108.87636 * 175.00284 * 17 16 15 24 24 H 1.09001 * 109.46691 * 300.00465 * 1 2 3 25 25 H 1.09000 * 109.46930 * 60.00039 * 1 2 3 26 26 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47204 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47060 * 299.99881 * 3 2 1 29 29 H 1.08998 * 109.46751 * 59.99764 * 3 2 1 30 30 H 1.08998 * 109.47195 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47516 * 300.00560 * 4 2 1 32 32 H 0.96997 * 120.00069 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46846 * 179.97438 * 13 2 1 34 34 H 1.08995 * 109.47264 * 59.99428 * 13 2 1 35 35 H 1.00907 * 110.99818 * 56.04869 * 14 13 2 36 36 H 1.08999 * 109.46766 * 60.00088 * 15 14 13 37 37 H 1.08998 * 109.47149 * 300.00249 * 15 14 13 38 38 H 1.09009 * 109.47084 * 60.00242 * 16 15 14 39 39 H 1.08995 * 109.47404 * 300.00698 * 16 15 14 40 40 H 1.09002 * 108.85122 * 56.44317 * 17 16 15 41 41 H 1.09005 * 108.81720 * 318.36964 * 18 17 16 42 42 H 1.09004 * 108.81387 * 76.75211 * 18 17 16 43 43 H 1.08997 * 108.87949 * 197.51000 * 19 18 17 44 44 H 1.09001 * 108.87760 * 79.06417 * 19 18 17 45 45 H 1.09003 * 109.63195 * 334.43897 * 20 19 18 46 46 H 1.09001 * 109.62960 * 213.85940 * 20 19 18 47 47 H 1.09001 * 108.89247 * 40.76541 * 21 20 19 48 48 H 1.09004 * 108.89281 * 159.35535 * 21 20 19 49 49 H 1.09000 * 108.89458 * 182.68905 * 22 21 20 50 50 H 1.08995 * 108.89787 * 301.28165 * 22 21 20 51 51 H 1.09006 * 109.62936 * 95.21889 * 23 17 16 52 52 H 1.08998 * 109.78811 * 334.73404 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5511 -3.8526 9 14 1.2480 0.3984 -5.2572 10 1 1.7421 1.7988 -5.2571 11 1 1.7431 -0.3016 -6.4697 12 1 -0.2370 0.3974 -5.2573 13 6 2.0400 -0.7213 1.2493 14 7 1.5504 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6704 16 6 1.4924 0.0534 4.8955 17 6 1.9829 -0.6404 6.1679 18 6 1.4192 -2.0738 6.2030 19 6 1.4843 -2.7072 7.6059 20 6 2.7798 -2.4113 8.3118 21 6 2.5815 -1.1641 9.1974 22 6 2.6599 0.0744 8.4370 23 6 1.5599 0.1740 7.3604 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7218 -1.2490 31 1 1.6766 -1.7490 -1.2492 32 1 2.8615 -1.8825 -4.7335 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2493 35 1 0.5438 0.0414 2.4402 36 1 3.1107 -0.6955 3.6873 37 1 1.6569 -1.7225 3.6869 38 1 0.4024 0.0541 4.8787 39 1 1.8566 1.0806 4.8787 40 1 3.0714 -0.6915 6.1439 41 1 0.3798 -2.0509 5.8755 42 1 1.9912 -2.6934 5.5124 43 1 1.3734 -3.7873 7.5107 44 1 0.6599 -2.3215 8.2056 45 1 3.5614 -2.2181 7.5769 46 1 3.0603 -3.2612 8.9339 47 1 1.6040 -1.2230 9.6762 48 1 3.3518 -1.1526 9.9685 49 1 2.5605 0.9162 9.1223 50 1 3.6338 0.1289 7.9506 51 1 0.6229 -0.2170 7.7572 52 1 1.4272 1.2155 7.0677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565089837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:28 Heat of formation + Delta-G solvation = -68.861380 kcal Electronic energy + Delta-G solvation = -22722.447878 eV Core-core repulsion = 19718.886715 eV Total energy + Delta-G solvation = -3003.561163 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.18939 -39.14084 -36.50138 -34.71588 -33.59632 -33.12201 -29.82513 -28.72637 -27.89421 -26.66796 -25.88505 -24.93636 -23.65980 -22.52940 -21.31658 -19.92622 -19.41240 -18.33197 -16.89897 -16.69041 -16.50524 -15.95039 -15.85305 -15.41260 -15.26201 -14.85669 -14.71254 -14.27498 -14.17941 -13.91342 -13.82891 -13.64050 -13.27193 -13.10235 -12.97217 -12.78926 -12.70684 -12.57222 -12.31865 -12.25540 -12.14135 -11.93740 -11.91628 -11.59256 -11.46527 -11.38754 -11.21933 -11.11864 -11.04132 -10.99458 -10.85357 -10.64651 -10.50166 -9.26141 -8.13893 -6.21209 1.40830 1.43413 1.50661 2.43841 3.19689 3.27927 3.71982 3.80579 3.99572 4.07287 4.16354 4.21066 4.23326 4.36184 4.38422 4.40387 4.44543 4.52736 4.55384 4.65691 4.77692 4.79253 4.80701 4.89435 4.93768 4.95517 5.06001 5.08126 5.13095 5.20853 5.21575 5.24441 5.27088 5.31710 5.35906 5.37288 5.41954 5.44328 5.51267 5.53126 5.53459 5.58252 5.61786 5.65998 5.68018 5.87129 5.92463 6.12682 6.37025 6.57042 6.93663 7.46018 8.98371 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.042661 B = 0.002512 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.178771 B =11145.230231 C =11389.022879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.055 4.055 3 C -0.106 4.106 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.067 0.933 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.083 3.917 14 N -0.684 5.684 15 C 0.058 3.942 16 C -0.103 4.103 17 C -0.077 4.077 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.109 4.109 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.028 0.972 28 H 0.039 0.961 29 H 0.068 0.932 30 H -0.017 1.017 31 H -0.017 1.017 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.014 0.986 35 H 0.343 0.657 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.066 0.934 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 1.750 26.665 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 C -0.164 4.164 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.192 1.192 13 C -0.047 4.047 14 N -0.317 5.317 15 C -0.071 4.071 16 C -0.141 4.141 17 C -0.096 4.096 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.147 4.147 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.001 0.999 31 H 0.001 0.999 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.084 0.916 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.485 2.104 26.547 26.745 hybrid contribution -0.382 -0.956 -1.405 1.742 sum -2.867 1.148 25.141 25.330 Atomic orbital electron populations 1.21683 0.94600 1.00363 1.01268 1.20494 0.95876 0.96086 0.93092 1.21497 0.99035 0.95264 1.00568 1.19016 0.94008 0.93991 0.92844 1.21584 1.30299 1.11955 0.91407 0.91541 1.25952 0.95714 0.95928 1.02659 1.70107 1.38839 1.24954 1.24107 0.85609 0.78960 0.78763 0.78380 1.19295 1.21361 1.19205 1.21797 0.98910 0.94134 0.89850 1.60525 1.16606 1.53560 1.00969 1.22049 0.99910 0.95540 0.89621 1.21684 1.00645 0.99365 0.92427 1.20881 1.00203 0.94346 0.94177 1.21999 1.00668 0.95357 0.96931 1.21325 0.98210 1.00016 0.95823 1.21350 0.97662 0.97915 0.98696 1.20479 1.02065 0.94572 0.98191 1.20476 0.98840 0.98148 0.98044 1.21375 0.98780 0.99689 0.94828 0.91319 0.93359 0.94562 0.95263 0.94184 0.91339 0.99894 0.99873 0.93158 0.92896 0.96762 0.83740 0.92254 0.95543 0.91787 0.91434 0.91909 0.92480 0.93218 0.92507 0.91806 0.92343 0.91671 0.91983 0.92067 0.91827 0.92682 0.91571 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 2 C -0.06 -2.24 0.60 -52.18 -0.03 -2.27 16 3 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -28.85 7.65 25.60 0.20 -28.65 16 6 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 7 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 8 N -0.94 -58.14 13.29 21.45 0.28 -57.85 16 9 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.08 2.93 4.65 86.30 0.40 3.33 16 14 N -0.68 -19.27 5.71 -513.89 -2.94 -22.21 16 15 C 0.06 1.37 5.40 86.30 0.47 1.84 16 16 C -0.10 -1.93 4.68 30.59 0.14 -1.79 16 17 C -0.08 -1.24 1.71 -11.25 -0.02 -1.26 16 18 C -0.11 -1.81 4.42 31.31 0.14 -1.67 16 19 C -0.12 -1.62 5.31 30.14 0.16 -1.46 16 20 C -0.12 -1.57 5.61 30.20 0.17 -1.40 16 21 C -0.12 -1.38 5.26 28.74 0.15 -1.23 16 22 C -0.12 -1.50 5.26 28.74 0.15 -1.35 16 23 C -0.11 -1.51 5.13 30.20 0.15 -1.36 16 24 H 0.07 2.02 6.57 -2.39 -0.02 2.01 16 25 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16 29 H 0.07 2.30 7.60 -2.39 -0.02 2.28 16 30 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.34 8.92 6.77 -89.69 -0.61 8.32 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.03 0.63 6.83 -2.39 -0.02 0.62 16 38 H 0.06 1.14 8.08 -2.38 -0.02 1.12 16 39 H 0.07 1.33 7.96 -2.39 -0.02 1.31 16 40 H 0.06 1.10 6.62 -2.39 -0.02 1.08 16 41 H 0.06 0.94 7.93 -2.38 -0.02 0.92 16 42 H 0.05 0.90 7.36 -2.38 -0.02 0.88 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.83 6.63 -2.39 -0.02 0.82 16 45 H 0.06 0.87 6.97 -2.39 -0.02 0.85 16 46 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.70 7.47 -2.39 -0.02 0.69 16 48 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.05 0.77 7.46 -2.39 -0.02 0.75 16 51 H 0.07 0.89 6.98 -2.38 -0.02 0.87 16 52 H 0.06 0.91 7.60 -2.39 -0.02 0.89 16 Total: -1.00 -62.09 376.62 3.42 -58.66 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.24 Total: 16.93 kcal Atomic # 6 Polarization: -46.21 SS G_CDS: 3.81 Total: -42.39 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.65 Total: -80.06 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.09 3.42 -58.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565089837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.198 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds