Wall clock time and date at job start Tue Mar 31 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 C 1.52997 * 109.46678 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47147 * 180.02562 * 4 3 2 6 6 C 1.46894 * 111.00373 * 190.00111 * 5 4 3 7 7 C 1.53004 * 109.47301 * 72.06011 * 6 5 4 8 8 C 1.52995 * 109.47131 * 184.27770 * 7 6 5 9 9 C 1.50700 * 109.46855 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00370 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00191 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99603 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00338 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47268 * 89.99686 * 13 11 9 15 15 H 1.48498 * 109.47359 * 209.99763 * 13 11 9 16 16 H 1.48500 * 109.46829 * 329.99786 * 13 11 9 17 17 C 1.46906 * 110.99679 * 66.04483 * 5 4 3 18 18 H 1.08996 * 109.47067 * 312.96342 * 17 5 4 19 19 C 1.53001 * 109.47049 * 72.96521 * 17 5 4 20 20 C 1.52999 * 109.47184 * 179.97438 * 19 17 5 21 21 C 1.52998 * 109.46955 * 299.99765 * 20 19 17 22 22 C 1.53003 * 109.47348 * 60.00087 * 21 20 19 23 23 H 1.09000 * 109.47135 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.46903 * 59.99607 * 22 21 20 25 25 C 1.52998 * 109.46886 * 192.96162 * 17 5 4 26 26 H 1.09001 * 109.47105 * 59.99658 * 1 2 3 27 27 H 1.08996 * 109.47730 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46842 * 300.00092 * 1 2 3 29 29 H 1.08996 * 109.47277 * 240.00115 * 2 1 3 30 30 H 1.09001 * 109.47105 * 120.00342 * 2 1 3 31 31 H 1.09003 * 109.46883 * 60.00280 * 3 2 1 32 32 H 1.08997 * 109.46971 * 300.00114 * 3 2 1 33 33 H 1.08996 * 109.47440 * 60.00235 * 4 3 2 34 34 H 1.08997 * 109.47529 * 299.99792 * 4 3 2 35 35 H 1.09001 * 109.47611 * 192.06511 * 6 5 4 36 36 H 1.09006 * 109.47047 * 312.06082 * 6 5 4 37 37 H 1.08999 * 109.47029 * 304.27781 * 7 6 5 38 38 H 1.09000 * 109.47018 * 64.27382 * 7 6 5 39 39 H 1.08999 * 109.47173 * 299.99923 * 8 7 6 40 40 H 1.09006 * 109.47241 * 60.00265 * 8 7 6 41 41 H 0.97004 * 119.99810 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.46770 * 299.99564 * 19 17 5 43 43 H 1.09001 * 109.47204 * 59.99074 * 19 17 5 44 44 H 1.08996 * 109.46863 * 59.99862 * 20 19 17 45 45 H 1.08998 * 109.47352 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.47440 * 300.00315 * 21 20 19 47 47 H 1.09001 * 109.46935 * 179.97438 * 21 20 19 48 48 H 1.09000 * 109.47560 * 300.00150 * 24 22 21 49 49 H 1.09001 * 109.47337 * 60.00433 * 24 22 21 50 50 H 1.09004 * 109.47162 * 180.02562 * 24 22 21 51 51 H 1.09006 * 109.47208 * 300.00498 * 25 17 5 52 52 H 1.08998 * 109.47158 * 60.00007 * 25 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8275 0.0013 6 6 5.5086 2.8737 -0.2363 7 6 5.7971 2.5262 -1.6981 8 6 7.3099 2.4698 -1.9199 9 6 7.5940 2.1270 -3.3596 10 1 6.7773 1.9659 -4.0477 11 6 8.8966 2.0190 -3.7985 12 7 9.8912 2.2157 -2.9607 13 14 9.2488 1.5947 -5.5832 14 1 9.3463 2.8446 -6.3793 15 1 10.5309 0.8506 -5.6715 16 1 8.1494 0.7518 -6.1179 17 6 3.7097 3.5090 1.2547 18 1 2.6612 3.3242 1.4882 19 6 4.5867 2.9737 2.3884 20 6 4.2226 3.6840 3.6937 21 6 4.4534 5.1883 3.5372 22 6 3.5764 5.7237 2.4035 23 1 3.7412 6.7954 2.2918 24 6 2.1046 5.4649 2.7316 25 6 3.9400 5.0135 1.0986 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8908 35 1 5.8805 3.8753 -0.0206 36 1 6.0064 2.1537 0.4134 37 1 5.3589 1.5566 -1.9344 38 1 5.3632 3.2885 -2.3452 39 1 7.7481 3.4395 -1.6836 40 1 7.7438 1.7075 -1.2728 41 1 10.8076 2.1400 -3.2695 42 1 4.4226 1.9019 2.4996 43 1 5.6353 3.1584 2.1548 44 1 3.1741 3.4996 3.9274 45 1 4.8471 3.3023 4.5015 46 1 5.5019 5.3727 3.3035 47 1 4.1936 5.6944 4.4670 48 1 1.9402 4.3931 2.8431 49 1 1.8452 5.9709 3.6615 50 1 1.4798 5.8459 1.9238 51 1 4.9886 5.1982 0.8650 52 1 3.3153 5.3948 0.2910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573026482.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:45 Heat of formation + Delta-G solvation = -49.295428 kcal Electronic energy + Delta-G solvation = -23494.839703 eV Core-core repulsion = 20492.126983 eV Total energy + Delta-G solvation = -3002.712720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.92852 -36.95130 -34.82429 -33.49420 -31.74555 -31.28899 -29.92510 -28.12544 -26.82585 -25.82015 -23.31687 -22.99227 -22.34461 -21.17250 -20.34115 -19.69156 -18.20250 -16.35543 -16.11202 -15.47019 -15.11086 -14.66103 -14.49589 -14.42745 -14.01935 -13.85700 -13.73695 -13.25965 -13.13231 -12.80515 -12.62620 -12.24645 -12.18918 -11.89784 -11.72721 -11.63821 -11.42610 -11.22177 -11.15437 -11.01007 -10.96108 -10.84866 -10.61196 -10.56603 -10.48934 -10.40785 -10.25673 -10.10393 -9.79968 -9.47707 -9.24583 -8.99560 -8.29639 -7.86273 -5.95254 -3.96870 3.35044 3.40949 3.44768 4.12222 4.50596 4.64125 4.73374 4.79514 4.95289 5.04112 5.10984 5.14270 5.18997 5.29244 5.32934 5.39339 5.40686 5.50492 5.54665 5.61494 5.66001 5.70888 5.73913 5.77524 5.80735 5.84731 5.90633 5.92162 5.97664 6.02339 6.05125 6.12282 6.16588 6.19568 6.21009 6.28851 6.34473 6.36841 6.42498 6.50329 6.53708 6.80776 6.89667 7.21843 7.52434 7.54750 7.74647 7.90217 8.05980 8.49893 9.10521 9.66854 11.16231 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.004124 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.134345 B = 6788.135396 C = 8280.761951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.114 4.114 4 C 0.051 3.949 5 N -0.533 5.533 6 C 0.054 3.946 7 C -0.103 4.103 8 C 0.022 3.978 9 C -0.516 4.516 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.083 3.917 18 H 0.081 0.919 19 C -0.154 4.154 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.090 4.090 23 H 0.068 0.932 24 C -0.149 4.149 25 C -0.106 4.106 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.014 0.986 40 H 0.012 0.988 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.049 0.951 50 H 0.053 0.947 51 H 0.065 0.935 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.159 2.354 13.577 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.077 4.077 5 N -0.255 5.255 6 C -0.072 4.072 7 C -0.141 4.141 8 C -0.016 4.016 9 C -0.555 4.555 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.025 4.025 18 H 0.099 0.901 19 C -0.193 4.193 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.109 4.109 23 H 0.087 0.913 24 C -0.206 4.206 25 C -0.144 4.144 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.084 0.916 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.197 2.597 13.180 21.822 hybrid contribution 0.838 -0.702 -0.277 1.127 sum -16.360 1.895 12.903 20.921 Atomic orbital electron populations 1.21753 0.96065 1.01264 1.01658 1.21502 0.95607 0.97190 1.02002 1.21621 0.95221 0.96105 1.02229 1.22169 0.94742 0.89724 1.01089 1.62270 1.15434 1.15169 1.32614 1.22308 0.85659 1.00657 0.98625 1.21631 0.99751 1.00013 0.92703 1.19070 0.89049 0.96924 0.96517 1.21265 0.91795 1.47004 0.95405 0.92728 1.25024 0.96446 0.95582 0.97451 1.69973 0.98849 1.50303 1.34559 0.86616 0.77618 0.78472 0.85434 1.20683 1.21295 1.19890 1.21779 0.99026 0.94047 0.87698 0.90063 1.22245 1.01430 0.99704 0.95886 1.21487 1.01205 0.95338 0.97235 1.21573 0.99948 0.95711 0.98028 1.21086 0.95154 0.99521 0.95168 0.91349 1.21929 0.95931 1.01871 1.00889 1.21587 1.02173 0.94110 0.96515 0.92715 0.93035 0.93042 0.91825 0.92392 0.92452 0.91252 0.90198 0.95239 0.91262 0.95243 0.93567 0.92871 0.96761 0.96958 0.93110 0.92339 0.91319 0.92033 0.92499 0.91936 0.92382 0.92236 0.93213 0.92790 0.91600 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.28 5.93 -26.73 -0.16 -1.43 16 3 C -0.11 -1.32 5.17 -26.73 -0.14 -1.45 16 4 C 0.05 0.70 4.71 -3.82 -0.02 0.68 16 5 N -0.53 -7.96 4.39 -226.65 -0.99 -8.95 16 6 C 0.05 0.97 3.59 -3.83 -0.01 0.95 16 7 C -0.10 -2.20 5.28 -26.73 -0.14 -2.34 16 8 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 9 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 13 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.08 1.04 1.79 -67.71 -0.12 0.92 16 18 H 0.08 0.97 4.29 -51.93 -0.22 0.74 16 19 C -0.15 -1.87 4.46 -26.73 -0.12 -1.99 16 20 C -0.11 -1.16 5.65 -26.73 -0.15 -1.32 16 21 C -0.12 -1.14 5.45 -26.73 -0.15 -1.28 16 22 C -0.09 -0.91 3.19 -90.64 -0.29 -1.20 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.15 -1.33 8.50 37.16 0.32 -1.02 16 25 C -0.11 -1.30 4.74 -26.76 -0.13 -1.42 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.24 6.35 -51.93 -0.33 0.91 16 34 H 0.03 0.41 6.55 -51.93 -0.34 0.07 16 35 H 0.07 1.24 6.10 -51.93 -0.32 0.92 16 36 H 0.03 0.54 7.15 -51.93 -0.37 0.17 16 37 H 0.05 0.98 6.47 -51.93 -0.34 0.64 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 0.73 6.70 -51.93 -0.35 0.38 16 43 H 0.07 0.95 6.66 -51.93 -0.35 0.61 16 44 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 52 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -29.53 377.01 -11.05 -40.58 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -10.16 Total: -2.49 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -1.29 Total: -25.16 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.26 Total: -35.63 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.53 -11.05 -40.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573026482.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.717 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds