Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.52999 * 109.46811 * 65.00188 * 3 2 1 6 6 C 1.52996 * 109.47179 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47201 * 300.00021 * 6 5 3 8 8 C 1.53003 * 109.46897 * 59.99589 * 7 6 5 9 9 H 1.09001 * 109.47183 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47106 * 60.00501 * 8 7 6 11 11 N 1.46899 * 109.47244 * 64.99628 * 10 8 7 12 12 C 1.46896 * 111.00180 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47399 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47210 * 300.00246 * 13 12 11 15 15 C 1.53004 * 109.46988 * 59.99783 * 13 12 11 16 16 C 1.52996 * 109.47393 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.47450 * 179.97438 * 16 13 12 18 18 H 1.07995 * 119.99716 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00237 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99850 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99963 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47271 * 89.99619 * 21 19 17 23 23 H 1.48499 * 109.47421 * 209.99546 * 21 19 17 24 24 H 1.48504 * 109.47317 * 330.00023 * 21 19 17 25 25 C 1.52996 * 109.47531 * 300.00209 * 8 7 6 26 26 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 30 30 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 31 31 H 1.09009 * 109.47170 * 300.00068 * 5 3 2 32 32 H 1.09001 * 109.47273 * 59.99848 * 5 3 2 33 33 H 1.08998 * 109.47611 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47165 * 59.99753 * 6 5 3 35 35 H 1.08997 * 109.47219 * 300.00244 * 7 6 5 36 36 H 1.09002 * 109.47423 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47533 * 184.99662 * 10 8 7 38 38 H 1.09001 * 109.47212 * 304.99963 * 10 8 7 39 39 H 1.00904 * 110.99916 * 303.95619 * 11 10 8 40 40 H 1.08996 * 109.46899 * 300.00333 * 12 11 10 41 41 H 1.08997 * 109.47094 * 59.99785 * 12 11 10 42 42 H 1.08997 * 109.47327 * 59.99818 * 14 13 12 43 43 H 1.09002 * 109.47145 * 179.97438 * 14 13 12 44 44 H 1.08995 * 109.47023 * 299.99381 * 14 13 12 45 45 H 1.09003 * 109.46713 * 60.00815 * 15 13 12 46 46 H 1.09001 * 109.46771 * 179.97438 * 15 13 12 47 47 H 1.08997 * 109.47316 * 300.00038 * 15 13 12 48 48 H 1.09001 * 109.47290 * 299.99771 * 16 13 12 49 49 H 1.08995 * 109.47285 * 60.00347 * 16 13 12 50 50 H 0.96994 * 119.99553 * 180.02562 * 20 19 17 51 51 H 1.09001 * 109.47165 * 300.00244 * 25 8 7 52 52 H 1.08995 * 109.47118 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 2.1446 3.5692 1.3072 7 6 3.6695 3.5717 1.1812 8 6 4.0742 2.8876 -0.1262 9 1 5.1605 2.8897 -0.2163 10 6 3.4636 3.6439 -1.3078 11 7 4.0433 4.9918 -1.3787 12 6 3.4788 5.7492 -2.5037 13 6 4.1049 7.1446 -2.5444 14 6 3.8047 7.8767 -1.2349 15 6 5.6193 7.0191 -2.7229 16 6 3.5174 7.9332 -3.7165 17 6 4.1337 9.3079 -3.7562 18 1 4.8709 9.5906 -3.0195 19 6 3.7570 10.2043 -4.7338 20 7 4.2952 11.4038 -4.7688 21 14 2.4823 9.7150 -6.0086 22 1 1.1270 10.0661 -5.5135 23 1 2.7484 10.4386 -7.2778 24 1 2.5580 8.2514 -6.2480 25 6 3.5648 1.4449 -0.1261 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.5488 2.1252 1.3970 32 1 2.0699 1.5874 2.1492 33 1 1.8567 4.0564 2.2388 34 1 1.7097 4.1080 0.4654 35 1 4.1045 3.0328 2.0228 36 1 4.0324 4.5995 1.1806 37 1 3.6774 3.1074 -2.2323 38 1 2.3846 3.7192 -1.1726 39 1 3.9147 5.4870 -0.5090 40 1 3.6923 5.2274 -3.4365 41 1 2.4000 5.8390 -2.3763 42 1 4.2236 7.3148 -0.4002 43 1 4.2511 8.8707 -1.2638 44 1 2.7259 7.9662 -1.1078 45 1 5.8332 6.4976 -3.6559 46 1 6.0653 8.0132 -2.7523 47 1 6.0382 6.4571 -1.8881 48 1 3.7317 7.4115 -4.6493 49 1 2.4386 8.0227 -3.5898 50 1 4.0299 12.0345 -5.4563 51 1 3.9998 0.9061 0.7157 52 1 3.8527 0.9578 -1.0576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588930263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = -53.321097 kcal Electronic energy + Delta-G solvation = -23379.318381 eV Core-core repulsion = 20376.431095 eV Total energy + Delta-G solvation = -3002.887286 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.80467 -37.54737 -35.08894 -33.28124 -32.10098 -31.02341 -29.17898 -27.69256 -26.34298 -26.05108 -24.44956 -23.41690 -22.47927 -21.67715 -20.75413 -18.82151 -17.67678 -16.76129 -16.07860 -15.49797 -15.20498 -14.68923 -14.58007 -14.07430 -14.03903 -13.66465 -13.44300 -13.21948 -13.07583 -12.89451 -12.59990 -12.36420 -12.16920 -12.04753 -11.78042 -11.61104 -11.51300 -11.28261 -11.16158 -11.05824 -10.96306 -10.84480 -10.77045 -10.48461 -10.41777 -10.24010 -10.07169 -9.99115 -9.76869 -9.64114 -9.23837 -8.86497 -8.47486 -8.03534 -5.97890 -3.93752 3.33480 3.41260 3.45225 4.38018 4.42982 4.49664 4.50329 4.68184 4.85585 4.92460 5.04496 5.12182 5.21273 5.30275 5.34837 5.36035 5.43001 5.45066 5.48737 5.56917 5.65573 5.68031 5.71679 5.75151 5.80027 5.85812 5.89282 5.91813 5.92671 6.00834 6.09478 6.15143 6.20309 6.24586 6.28630 6.32684 6.37642 6.46466 6.63217 6.73152 6.83621 7.11863 7.17763 7.23003 7.36569 7.39008 7.50710 7.72066 7.88254 8.62489 9.08312 9.65449 11.15315 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.003306 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.847693 B = 8466.790277 C = 8923.032821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.072 0.928 5 C -0.112 4.112 6 C -0.124 4.124 7 C -0.116 4.116 8 C -0.085 4.085 9 H 0.078 0.922 10 C 0.060 3.940 11 N -0.686 5.686 12 C 0.068 3.932 13 C -0.049 4.049 14 C -0.130 4.130 15 C -0.117 4.117 16 C -0.005 4.005 17 C -0.506 4.506 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.875 3.125 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.267 1.267 25 C -0.107 4.107 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.338 0.662 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.014 0.986 49 H 0.007 0.993 50 H 0.261 0.739 51 H 0.061 0.939 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 -22.132 12.246 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.090 0.910 5 C -0.149 4.149 6 C -0.162 4.162 7 C -0.153 4.153 8 C -0.104 4.104 9 H 0.096 0.904 10 C -0.069 4.069 11 N -0.319 5.319 12 C -0.061 4.061 13 C -0.049 4.049 14 C -0.187 4.187 15 C -0.174 4.174 16 C -0.042 4.042 17 C -0.544 4.544 18 H 0.096 0.904 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.703 3.297 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.191 1.191 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.158 0.842 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.025 0.975 50 H 0.071 0.929 51 H 0.079 0.921 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.281 -22.170 11.791 25.473 hybrid contribution -1.685 0.104 -0.518 1.766 sum -5.966 -22.066 11.273 25.487 Atomic orbital electron populations 1.21826 0.96082 1.01312 1.01948 1.21570 0.95769 0.96625 1.01733 1.21244 0.95786 0.95547 0.98364 0.90961 1.21601 1.00314 0.95717 0.97307 1.21599 0.96163 0.96728 1.01674 1.21565 0.95565 1.00874 0.97324 1.21125 1.00709 0.94082 0.94451 0.90377 1.22076 0.96263 0.90696 0.97913 1.60580 1.60874 1.02849 1.07580 1.22108 0.95472 0.94956 0.93561 1.20410 0.96165 0.91643 0.96680 1.21775 1.00045 1.01288 0.95621 1.21605 0.94837 1.01245 0.99741 1.19629 0.95378 0.96132 0.93096 1.21148 1.23803 0.95615 1.13815 0.90422 1.25019 0.96203 0.94888 0.97518 1.69911 1.43810 1.05994 1.34889 0.86849 0.82275 0.79085 0.81459 1.20535 1.21560 1.19138 1.21581 0.94975 0.96271 1.01636 0.92794 0.93069 0.92544 0.92145 0.92232 0.92150 0.92270 0.92267 0.91851 0.92156 0.91667 0.91671 0.95099 0.84166 0.91765 0.96170 0.94649 0.91194 0.94226 0.94281 0.92199 0.93657 0.96742 0.97462 0.92920 0.92051 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.02 16 3 C -0.09 -0.75 1.92 -90.62 -0.17 -0.93 16 4 H 0.07 0.68 6.54 -51.93 -0.34 0.34 16 5 C -0.11 -0.92 4.96 -26.73 -0.13 -1.05 16 6 C -0.12 -1.13 5.65 -26.73 -0.15 -1.28 16 7 C -0.12 -1.09 5.22 -26.73 -0.14 -1.23 16 8 C -0.08 -0.84 2.87 -90.62 -0.26 -1.10 16 9 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 10 C 0.06 0.71 4.44 -3.82 -0.02 0.69 16 11 N -0.69 -9.65 5.71 -113.79 -0.65 -10.30 16 12 C 0.07 1.14 4.65 -3.83 -0.02 1.12 16 13 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 14 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 15 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 16 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 17 C -0.51 -14.08 8.20 -34.44 -0.28 -14.37 16 18 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 19 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 20 N -0.91 -27.98 13.96 55.43 0.77 -27.21 16 21 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 25 C -0.11 -0.91 4.73 -26.73 -0.13 -1.04 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.48 6.57 -51.92 -0.34 0.14 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.66 6.32 -51.93 -0.33 0.33 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.67 6.68 -51.93 -0.35 0.32 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.37 4.83 -51.93 -0.25 0.12 16 39 H 0.34 4.62 5.02 -39.29 -0.20 4.42 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 43 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 47 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 48 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 49 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 50 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -28.95 371.79 -9.87 -38.82 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -10.15 Total: 0.30 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -0.77 Total: -24.52 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.12 Total: -37.51 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.95 -9.87 -38.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588930263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.501 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds