Wall clock time and date at job start Tue Mar 31 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31538 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48505 * 109.46837 * 270.00235 * 3 2 1 5 5 H 1.48509 * 109.47257 * 29.99851 * 3 2 1 6 6 H 1.48493 * 109.47537 * 150.00030 * 3 2 1 7 7 C 1.38847 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 0.02562 * 7 2 1 9 9 N 1.36881 * 120.00402 * 180.27182 * 7 2 1 10 10 C 1.38569 * 120.00510 * 174.45772 * 9 7 2 11 11 C 1.40280 * 119.24099 * 5.79583 * 10 9 7 12 12 C 1.36226 * 119.87372 * 179.97438 * 11 10 9 13 13 C 1.40988 * 118.29674 * 0.02562 * 12 11 10 14 14 C 1.40431 * 121.26010 * 179.97438 * 13 12 11 15 15 Cl 1.73605 * 120.18108 * 0.02562 * 14 13 12 16 16 C 1.36358 * 119.64647 * 179.97438 * 14 13 12 17 17 C 1.39257 * 120.85207 * 0.04674 * 16 14 13 18 18 C 1.36240 * 121.03631 * 359.97438 * 17 16 14 19 19 Cl 1.73597 * 120.11633 * 180.02562 * 18 17 16 20 20 C 1.40681 * 119.76045 * 0.02562 * 18 17 16 21 21 N 1.31818 * 119.24190 * 185.52960 * 10 9 7 22 22 H 0.97008 * 119.99849 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99196 * 354.46347 * 9 7 2 24 24 H 1.08005 * 120.05683 * 359.97438 * 11 10 9 25 25 H 1.08004 * 120.85113 * 179.97438 * 12 11 10 26 26 H 1.07993 * 119.57269 * 180.02562 * 16 14 13 27 27 H 1.08004 * 119.47633 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4402 0.7000 7 6 2.0096 -1.2024 0.0005 8 1 1.4696 -2.1378 0.0005 9 7 3.3784 -1.2026 0.0062 10 6 4.0708 -2.3972 0.1226 11 6 3.3588 -3.6058 0.1104 12 6 4.0266 -4.7878 0.2235 13 6 5.4302 -4.7529 0.3512 14 6 6.1805 -5.9338 0.4723 15 17 5.3858 -7.4773 0.4667 16 6 7.5368 -5.8618 0.5934 17 6 8.1889 -4.6313 0.5996 18 6 7.4918 -3.4664 0.4844 19 17 8.3292 -1.9457 0.4942 20 6 6.0912 -3.5003 0.3576 21 7 5.3838 -2.3720 0.2369 22 1 -0.4850 0.8401 -0.0004 23 1 3.8637 -0.3662 -0.0713 24 1 2.2833 -3.5992 0.0116 25 1 3.4942 -5.7276 0.2164 26 1 8.1127 -6.7706 0.6861 27 1 9.2640 -4.6001 0.6971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537639.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:15 Heat of formation + Delta-G solvation = 43.605626 kcal Electronic energy + Delta-G solvation = -16625.989064 eV Core-core repulsion = 13628.298688 eV Total energy + Delta-G solvation = -2997.690377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.002 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14692 -37.60247 -36.44256 -35.80222 -34.81187 -32.60499 -32.24072 -29.33984 -28.95551 -25.10690 -23.61192 -22.10561 -21.54501 -18.94916 -17.70115 -16.93934 -16.63241 -15.32402 -14.96405 -14.58021 -14.31184 -14.24622 -13.37911 -12.88577 -12.78546 -12.76073 -12.53909 -12.13293 -11.92582 -11.55627 -11.53286 -10.94485 -10.72348 -10.64469 -10.39507 -10.27558 -10.09997 -9.64039 -9.06887 -8.71266 -7.86700 -7.29760 -6.88655 -4.14532 0.80270 1.45305 2.27846 2.48838 2.70430 2.86110 2.91481 2.94389 3.31900 3.72654 4.18040 4.46602 4.91282 4.96119 5.10988 5.39469 5.45173 5.62306 5.79171 5.96293 6.26730 6.33117 6.39823 6.50357 6.75187 6.79241 7.03735 7.20446 7.54346 8.11461 8.43770 8.79004 9.15094 10.19192 Molecular weight = 282.00amu Principal moments of inertia in cm(-1) A = 0.018909 B = 0.005697 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.424886 B = 4913.612114 C = 6380.931482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.051 3.949 3 Si 0.882 3.118 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.309 4.309 8 H 0.127 0.873 9 N -0.526 5.526 10 C 0.372 3.628 11 C -0.175 4.175 12 C -0.047 4.047 13 C -0.177 4.177 14 C 0.032 3.968 15 Cl -0.080 7.080 16 C -0.175 4.175 17 C -0.068 4.068 18 C -0.053 4.053 19 Cl -0.067 7.067 20 C 0.233 3.767 21 N -0.587 5.587 22 H 0.285 0.715 23 H 0.388 0.612 24 H 0.140 0.860 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.142 -7.739 0.616 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.158 4.158 3 Si 0.706 3.294 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.439 4.439 8 H 0.144 0.856 9 N -0.131 5.131 10 C 0.121 3.879 11 C -0.198 4.198 12 C -0.072 4.072 13 C -0.185 4.185 14 C 0.004 3.996 15 Cl -0.051 7.051 16 C -0.197 4.197 17 C -0.089 4.089 18 C -0.084 4.084 19 Cl -0.038 7.038 20 C 0.099 3.901 21 N -0.313 5.313 22 H 0.096 0.904 23 H 0.224 0.776 24 H 0.157 0.843 25 H 0.150 0.850 26 H 0.147 0.853 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.906 -6.631 0.585 11.935 hybrid contribution -0.052 0.410 -0.022 0.413 sum 9.854 -6.221 0.564 11.667 Atomic orbital electron populations 1.69649 1.05830 1.29170 1.43358 1.25108 0.95698 0.98999 0.96026 0.86552 0.80405 0.82535 0.79885 1.18775 1.19349 1.18351 1.19601 0.78628 0.97250 1.48393 0.85606 1.41252 1.06320 1.05088 1.60468 1.18225 0.87959 0.86346 0.95321 1.21421 1.01601 0.91445 1.05381 1.21034 0.92111 0.98207 0.95842 1.18039 0.94471 0.91755 1.14188 1.20612 0.92609 0.84943 1.01428 1.98330 1.81053 1.28932 1.96783 1.20175 0.92216 0.97662 1.09619 1.20399 0.99746 0.90010 0.98717 1.20245 0.90441 0.87094 1.10579 1.98317 1.76912 1.31633 1.96965 1.17808 0.91353 0.87475 0.93444 1.67545 1.05598 1.27775 1.30380 0.90436 0.77572 0.84282 0.84996 0.85279 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.40 13.96 55.49 0.77 -20.63 15 2 C 0.05 1.23 5.50 -17.45 -0.10 1.13 15 3 Si 0.88 17.99 27.69 -169.99 -4.71 13.28 15 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 6 H -0.26 -5.20 6.59 56.52 0.37 -4.82 15 7 C -0.31 -7.37 10.01 -15.07 -0.15 -7.52 15 8 H 0.13 3.08 5.84 -52.49 -0.31 2.77 15 9 N -0.53 -11.79 5.22 -11.10 -0.06 -11.85 15 10 C 0.37 8.09 7.59 -155.50 -1.18 6.91 15 11 C -0.18 -3.45 9.24 -39.54 -0.37 -3.82 15 12 C -0.05 -0.84 9.51 -39.26 -0.37 -1.21 15 13 C -0.18 -3.20 5.75 -106.73 -0.61 -3.82 15 14 C 0.03 0.49 6.32 -39.43 -0.25 0.24 15 15 Cl -0.08 -1.08 27.54 -51.86 -1.43 -2.50 15 16 C -0.18 -2.43 9.73 -39.88 -0.39 -2.81 15 17 C -0.07 -0.97 9.71 -39.92 -0.39 -1.36 15 18 C -0.05 -0.93 6.33 -39.38 -0.25 -1.17 15 19 Cl -0.07 -1.11 28.52 -51.86 -1.48 -2.59 15 20 C 0.23 4.58 6.60 -84.83 -0.56 4.02 15 21 N -0.59 -12.66 9.84 -10.18 -0.10 -12.76 15 22 H 0.28 6.66 8.31 -40.82 -0.34 6.32 15 23 H 0.39 8.46 5.94 -40.82 -0.24 8.22 15 24 H 0.14 2.67 5.90 -52.48 -0.31 2.36 15 25 H 0.13 2.02 7.05 -52.48 -0.37 1.65 15 26 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.13 1.49 8.06 -52.48 -0.42 1.07 15 LS Contribution 269.01 15.07 4.05 4.05 Total: -1.00 -24.96 269.01 -8.79 -33.75 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -1.24 Total: 8.66 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -4.61 Total: -9.41 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.62 Total: -45.24 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -4.71 Total: 13.28 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -2.91 Total: -5.10 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -24.96 -8.79 -33.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537639.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.361 kcal (2) G-P(sol) polarization free energy of solvation -24.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds