Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31597 * 1 3 3 Si 1.86798 * 119.99738 * 2 1 4 4 H 1.48502 * 109.46852 * 240.00164 * 3 2 1 5 5 H 1.48502 * 109.47380 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47130 * 119.99887 * 3 2 1 7 7 C 1.38785 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99970 * 179.97438 * 7 2 1 9 9 N 1.36919 * 120.00401 * 359.97438 * 7 2 1 10 10 C 1.39085 * 120.00372 * 179.97438 * 9 7 2 11 11 N 1.33051 * 125.28566 * 359.97438 * 10 9 7 12 12 C 1.32887 * 109.63962 * 179.75049 * 11 10 9 13 13 C 1.40649 * 132.72932 * 179.52795 * 12 11 10 14 14 C 1.36222 * 119.29182 * 180.43016 * 13 12 11 15 15 C 1.40302 * 119.60273 * 0.27876 * 14 13 12 16 16 Br 1.89102 * 119.90750 * 180.02562 * 15 14 13 17 17 C 1.35313 * 120.18720 * 0.02562 * 15 14 13 18 18 N 1.35900 * 120.57552 * 359.97438 * 17 15 14 19 19 N 1.31901 * 125.28596 * 180.02562 * 10 9 7 20 20 H 0.96997 * 119.99801 * 0.02562 * 1 2 3 21 21 H 0.97006 * 119.99430 * 0.02562 * 9 7 2 22 22 H 1.08002 * 120.35721 * 0.71217 * 13 12 11 23 23 H 1.07997 * 120.19801 * 180.29862 * 14 13 12 24 24 H 1.08000 * 119.71036 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.1036 1.6964 -1.2126 5 1 1.2849 2.7465 -0.0006 6 1 3.1036 1.6965 1.2125 7 6 2.0099 -1.2019 0.0005 8 1 3.0899 -1.2019 0.0001 9 7 1.3254 -2.3877 0.0016 10 6 2.0208 -3.5922 0.0016 11 7 3.3457 -3.7148 0.0001 12 6 3.6751 -5.0022 0.0061 13 6 4.9126 -5.6706 -0.0010 14 6 4.9343 -7.0327 -0.0006 15 6 3.7257 -7.7451 0.0011 16 35 3.7458 -9.6360 0.0025 17 6 2.5456 -7.0830 0.0016 18 7 2.5152 -5.7244 0.0011 19 7 1.4694 -4.7904 0.0021 20 1 -0.4850 0.8400 -0.0004 21 1 0.3553 -2.3877 0.0016 22 1 5.8358 -5.1101 -0.0022 23 1 5.8763 -7.5609 -0.0011 24 1 1.6198 -7.6392 0.0024 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186664.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = 116.174089 kcal Electronic energy + Delta-G solvation = -13689.066276 eV Core-core repulsion = 11071.678604 eV Total energy + Delta-G solvation = -2617.387671 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 281.981 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.37238 -39.13176 -36.83097 -34.44296 -33.74288 -32.54510 -30.93334 -29.55040 -26.78041 -24.65597 -23.91997 -22.27637 -20.06918 -18.60588 -18.16242 -17.45806 -17.14043 -16.43181 -16.07400 -15.58600 -15.37188 -14.26075 -13.74836 -13.52672 -13.41615 -13.05917 -12.53746 -12.47223 -12.25598 -12.10623 -12.08687 -11.36349 -11.31107 -10.83247 -10.55497 -9.55805 -9.06084 -8.46715 -5.84311 -0.28297 -0.02510 0.27756 1.38181 1.43861 1.46881 1.57519 1.88067 2.27459 2.45260 2.74263 3.14047 3.16175 3.65126 3.74314 4.07457 4.32601 4.79352 4.86813 5.00881 5.27765 5.40632 5.49095 5.82024 5.89896 6.65835 7.00626 7.30583 7.74669 8.72105 Molecular weight = 281.98amu Principal moments of inertia in cm(-1) A = 0.071444 B = 0.003713 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.821782 B = 7539.860923 C = 7921.839400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.027 4.027 3 Si 1.008 2.992 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.308 4.308 8 H 0.098 0.902 9 N -0.539 5.539 10 C 0.463 3.537 11 N -0.606 5.606 12 C 0.287 3.713 13 C -0.124 4.124 14 C -0.011 4.011 15 C -0.161 4.161 16 Br 0.009 6.991 17 C 0.154 3.846 18 N -0.292 5.292 19 N -0.454 5.454 20 H 0.277 0.723 21 H 0.406 0.594 22 H 0.181 0.819 23 H 0.197 0.803 24 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.001 -20.234 0.012 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.225 4.225 3 Si 0.830 3.170 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.116 0.884 9 N -0.163 5.163 10 C 0.099 3.901 11 N -0.343 5.343 12 C 0.033 3.967 13 C -0.147 4.147 14 C -0.038 4.038 15 C -0.247 4.247 16 Br 0.092 6.908 17 C 0.018 3.982 18 N -0.066 5.066 19 N -0.306 5.306 20 H 0.086 0.914 21 H 0.242 0.758 22 H 0.198 0.802 23 H 0.214 0.786 24 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.302 -20.090 0.005 22.577 hybrid contribution -0.611 1.240 0.004 1.382 sum 9.691 -18.850 0.010 21.195 Atomic orbital electron populations 1.69794 1.07233 1.29384 1.51002 1.26198 0.96677 1.02668 0.97004 0.84768 0.77406 0.75571 0.79253 1.19185 1.20007 1.19169 1.19817 0.92975 0.82202 1.48816 0.88431 1.39768 1.07223 0.99185 1.70103 1.20722 0.87445 0.87623 0.94278 1.70548 1.12397 1.15862 1.35503 1.22492 0.90889 0.86980 0.96361 1.20532 0.93652 0.94233 1.06296 1.21441 0.98587 0.91944 0.91801 1.21153 0.94098 0.93372 1.16041 1.96758 1.99097 0.96897 1.98026 1.21711 1.01245 0.79345 0.95895 1.47510 1.06547 1.06292 1.46227 1.78695 1.04644 0.95830 1.51409 0.91393 0.75796 0.80220 0.78640 0.79731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.21 13.05 21.65 0.28 -52.93 14 2 C -0.03 -1.45 5.50 84.86 0.47 -0.99 14 3 Si 1.01 43.21 29.55 68.60 2.03 45.23 14 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 14 5 H -0.28 -11.32 7.11 99.48 0.71 -10.61 14 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 14 7 C -0.31 -17.69 9.81 84.03 0.82 -16.87 14 8 H 0.10 5.63 7.36 -2.91 -0.02 5.61 14 9 N -0.54 -30.61 5.45 -193.98 -1.06 -31.67 14 10 C 0.46 24.69 8.79 261.15 2.30 26.98 14 11 N -0.61 -30.08 10.54 -195.68 -2.06 -32.14 14 12 C 0.29 11.30 7.87 134.08 1.06 12.36 14 13 C -0.12 -3.21 10.11 22.39 0.23 -2.98 14 14 C -0.01 -0.20 9.82 22.30 0.22 0.02 14 15 C -0.16 -3.33 6.19 22.10 0.14 -3.20 14 16 Br 0.01 0.13 33.69 -20.37 -0.69 -0.56 14 17 C 0.15 4.24 10.91 83.39 0.91 5.15 14 18 N -0.29 -11.42 3.89 -192.86 -0.75 -12.17 14 19 N -0.45 -22.10 12.81 -59.34 -0.76 -22.86 14 20 H 0.28 14.77 8.31 -92.71 -0.77 14.00 14 21 H 0.41 23.42 8.02 -92.70 -0.74 22.68 14 22 H 0.18 3.72 8.06 -2.91 -0.02 3.69 14 23 H 0.20 1.82 8.06 -2.91 -0.02 1.79 14 24 H 0.19 4.28 8.06 -2.91 -0.02 4.26 14 Total: -1.00 -69.60 247.16 3.64 -65.95 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.52 Total: 20.66 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 6.13 Total: 20.48 kcal Atomic # 7 Polarization: -147.42 SS G_CDS: -4.35 Total: -151.77 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 35 Polarization: 0.13 SS G_CDS: -0.69 Total: -0.56 kcal Total: -69.60 3.64 -65.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186664.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.127 kcal (2) G-P(sol) polarization free energy of solvation -69.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds