Wall clock time and date at job start Tue Mar 31 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46878 * 2 1 4 4 C 1.53008 * 109.46830 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47118 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47166 * 173.84856 * 6 5 4 8 8 H 1.09007 * 109.47031 * 304.30542 * 7 6 5 9 9 C 1.52998 * 109.47351 * 184.30022 * 7 6 5 10 10 C 1.52994 * 109.47122 * 177.14647 * 9 7 6 11 11 N 1.46900 * 109.47148 * 64.29786 * 7 6 5 12 12 C 1.46845 * 111.00463 * 272.39114 * 11 7 6 13 13 C 1.53036 * 109.52681 * 185.83830 * 12 11 7 14 14 C 1.53198 * 109.29679 * 300.82170 * 13 12 11 15 15 C 1.53115 * 109.12285 * 57.62743 * 14 13 12 16 16 H 1.09005 * 109.50244 * 62.32165 * 15 14 13 17 17 C 1.50697 * 109.50957 * 182.40162 * 15 14 13 18 18 H 1.07997 * 119.99939 * 119.91817 * 17 15 14 19 19 C 1.37875 * 120.00012 * 299.92247 * 17 15 14 20 20 N 1.31517 * 119.99901 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00251 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46861 * 59.99988 * 21 19 17 23 23 H 1.48500 * 109.47316 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47567 * 300.00502 * 21 19 17 25 25 C 1.46849 * 110.99644 * 36.59902 * 11 7 6 26 26 H 1.08998 * 109.46387 * 299.99471 * 1 2 3 27 27 H 1.08995 * 109.47273 * 59.99603 * 1 2 3 28 28 H 1.08996 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46427 * 240.00031 * 2 1 3 30 30 H 1.08995 * 109.47273 * 120.00397 * 2 1 3 31 31 H 1.08994 * 109.47636 * 60.00432 * 3 2 1 32 32 H 1.09003 * 109.47263 * 300.00008 * 3 2 1 33 33 H 1.08994 * 109.46978 * 59.99637 * 4 3 2 34 34 H 1.09003 * 109.46884 * 299.99848 * 4 3 2 35 35 H 1.09006 * 109.47020 * 59.99886 * 5 4 3 36 36 H 1.08996 * 109.47058 * 300.00432 * 5 4 3 37 37 H 1.08997 * 109.46883 * 53.85203 * 6 5 4 38 38 H 1.08996 * 109.46991 * 293.85144 * 6 5 4 39 39 H 1.09003 * 109.46905 * 297.14925 * 9 7 6 40 40 H 1.08999 * 109.46740 * 57.14451 * 9 7 6 41 41 H 1.09003 * 109.47461 * 305.03200 * 10 9 7 42 42 H 1.08998 * 109.46940 * 65.03168 * 10 9 7 43 43 H 1.08998 * 109.47384 * 185.02748 * 10 9 7 44 44 H 1.09005 * 109.46098 * 305.85578 * 12 11 7 45 45 H 1.09007 * 109.46237 * 65.82113 * 12 11 7 46 46 H 1.08994 * 109.50317 * 60.75842 * 13 12 11 47 47 H 1.09001 * 109.50333 * 180.84269 * 13 12 11 48 48 H 1.09006 * 109.51685 * 297.75187 * 14 13 12 49 49 H 1.09005 * 109.57802 * 177.54264 * 14 13 12 50 50 H 0.97003 * 119.99785 * 179.97438 * 20 19 17 51 51 H 1.08996 * 109.46415 * 54.14844 * 25 11 7 52 52 H 1.08994 * 109.45851 * 294.16543 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0013 7 6 6.1201 4.3190 -0.1565 8 1 5.6951 4.7602 -1.0582 9 6 7.6463 4.3088 -0.2642 10 6 8.1512 5.7351 -0.4906 11 7 5.7171 5.1114 1.0130 12 6 4.3833 5.6944 0.8194 13 6 4.0582 6.6271 1.9884 14 6 4.1034 5.8327 3.2975 15 6 5.4875 5.1960 3.4504 16 1 6.2435 5.9789 3.5111 17 6 5.5228 4.3640 4.7064 18 1 5.7283 3.3055 4.6472 19 6 5.2927 4.9543 5.9310 20 7 5.0419 6.2433 6.0029 21 14 5.3358 3.9229 7.4878 22 1 6.6777 3.3038 7.6344 23 1 5.0594 4.7882 8.6626 24 1 4.3054 2.8569 7.4041 25 6 5.7711 4.3048 2.2390 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9338 0.9285 0.8892 35 1 3.7171 3.3991 0.8887 36 1 3.7164 3.3985 -0.8912 37 1 5.9734 2.2784 -0.8308 38 1 5.9734 2.4698 0.9388 39 1 8.0729 3.9144 0.6581 40 1 7.9471 3.6795 -1.1018 41 1 7.6563 6.1615 -1.3633 42 1 7.9285 6.3428 0.3864 43 1 9.2283 5.7173 -0.6563 44 1 4.3659 6.2600 -0.1122 45 1 3.6415 4.8970 0.7739 46 1 4.7917 7.4325 2.0262 47 1 3.0621 7.0481 1.8519 48 1 3.3435 5.0515 3.2759 49 1 3.9154 6.5017 4.1374 50 1 4.8797 6.6585 6.8644 51 1 6.7618 3.8613 2.3385 52 1 5.0227 3.5142 2.1868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170600430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:23 Heat of formation + Delta-G solvation = -41.698119 kcal Electronic energy + Delta-G solvation = -23949.708426 eV Core-core repulsion = 20947.325150 eV Total energy + Delta-G solvation = -3002.383276 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.34134 -36.28323 -35.11810 -32.76752 -32.72299 -30.60946 -29.82061 -28.77563 -25.95345 -24.93867 -23.31828 -22.59006 -21.49773 -21.04739 -20.60712 -19.48055 -18.34428 -16.50157 -15.88021 -15.44063 -14.66645 -14.43525 -14.35916 -14.07077 -13.92063 -13.36936 -13.09655 -12.98748 -12.97269 -12.56936 -12.30982 -12.26427 -11.88230 -11.75382 -11.66095 -11.33528 -11.24732 -11.09924 -10.91125 -10.87662 -10.70973 -10.65299 -10.59802 -10.52042 -10.37974 -10.19461 -10.05011 -9.91602 -9.69532 -9.36911 -8.92221 -8.62483 -8.24723 -7.36905 -5.92773 -3.98572 3.34161 3.39005 3.41384 4.43684 4.61180 4.68048 4.87732 5.02871 5.08403 5.17300 5.31368 5.37171 5.41909 5.52343 5.56752 5.58576 5.71271 5.76370 5.77265 5.83411 5.86835 5.90060 5.94492 5.98612 6.04523 6.10601 6.14040 6.19970 6.21349 6.28420 6.31745 6.34767 6.36001 6.45580 6.51140 6.59543 6.62893 6.66021 6.75878 6.83146 6.87829 7.09620 7.29767 7.49423 7.79009 7.83268 7.97888 8.16398 8.24547 8.54875 9.05745 9.65415 11.13054 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.005838 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.180229 B = 4795.334925 C = 6524.640446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.130 4.130 6 C -0.150 4.150 7 C 0.083 3.917 8 H 0.066 0.934 9 C -0.109 4.109 10 C -0.139 4.139 11 N -0.527 5.527 12 C 0.050 3.950 13 C -0.118 4.118 14 C -0.108 4.108 15 C 0.055 3.945 16 H 0.031 0.969 17 C -0.512 4.512 18 H 0.051 0.949 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.065 3.935 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.027 0.973 49 H 0.088 0.912 50 H 0.259 0.741 51 H 0.055 0.945 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 -6.613 -14.215 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.167 4.167 6 C -0.188 4.188 7 C -0.026 4.026 8 H 0.084 0.916 9 C -0.147 4.147 10 C -0.197 4.197 11 N -0.251 5.251 12 C -0.077 4.077 13 C -0.155 4.155 14 C -0.147 4.147 15 C 0.036 3.964 16 H 0.049 0.951 17 C -0.551 4.551 18 H 0.069 0.931 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.715 3.285 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.062 4.062 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.046 0.954 49 H 0.107 0.893 50 H 0.069 0.931 51 H 0.073 0.927 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.811 -6.074 -14.029 15.543 hybrid contribution -0.594 -1.241 0.792 1.587 sum -3.405 -7.315 -13.237 15.502 Atomic orbital electron populations 1.21782 0.96129 1.01294 1.01818 1.21535 0.95657 0.97264 1.01767 1.21624 0.95754 0.96393 1.02032 1.21595 0.95059 0.97238 1.01597 1.21982 0.95712 0.96518 1.02440 1.22295 0.95636 0.98480 1.02427 1.21758 0.95281 0.91382 0.94169 0.91573 1.21472 0.94977 0.97327 1.00937 1.21604 0.98813 0.97159 1.02076 1.62142 1.26130 1.34612 1.02168 1.22350 0.89968 0.97392 0.98034 1.21689 0.99042 0.98434 0.96383 1.21640 0.99002 0.98737 0.95273 1.18657 0.93518 0.94194 0.90021 0.95065 1.21116 1.48002 0.94746 0.91265 0.93068 1.24914 0.95283 0.94819 0.98733 1.69886 1.48485 1.09684 1.24690 0.86741 0.78464 0.80227 0.83021 1.20357 1.21354 1.20453 1.22366 0.99144 0.95292 0.89375 0.92643 0.92930 0.93043 0.92391 0.92056 0.91810 0.92370 0.92647 0.92041 0.90104 0.92674 0.92589 0.90853 0.91898 0.92968 0.93850 0.91140 0.94143 0.92982 0.94310 0.92354 0.93883 0.95383 0.89331 0.93101 0.92681 0.95326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.26 5.93 -26.73 -0.16 -1.42 16 3 C -0.12 -1.37 5.21 -26.73 -0.14 -1.51 16 4 C -0.12 -1.42 5.21 -26.73 -0.14 -1.56 16 5 C -0.13 -1.76 3.57 -26.73 -0.10 -1.85 16 6 C -0.15 -2.08 4.16 -26.73 -0.11 -2.19 16 7 C 0.08 1.23 1.97 -67.71 -0.13 1.09 16 8 H 0.07 0.94 7.66 -51.93 -0.40 0.54 16 9 C -0.11 -1.52 5.52 -26.74 -0.15 -1.67 16 10 C -0.14 -1.91 9.72 37.15 0.36 -1.55 16 11 N -0.53 -9.34 3.94 -226.69 -0.89 -10.23 16 12 C 0.05 0.87 4.98 -3.84 -0.02 0.85 16 13 C -0.12 -2.30 6.09 -26.61 -0.16 -2.47 16 14 C -0.11 -2.56 5.03 -26.57 -0.13 -2.69 16 15 C 0.05 1.36 2.26 -91.69 -0.21 1.16 16 16 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 18 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.44 11.35 55.43 0.63 -24.81 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.06 1.34 3.21 -3.83 -0.01 1.33 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.30 4.13 -51.93 -0.21 1.08 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.14 6.14 -51.93 -0.32 0.83 16 39 H 0.06 0.96 7.22 -51.93 -0.37 0.59 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.13 7.84 -51.93 -0.41 0.72 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.82 7.90 -51.93 -0.41 0.41 16 45 H 0.04 0.66 4.53 -51.93 -0.24 0.42 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 50 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 51 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 52 H 0.03 0.59 5.07 -51.93 -0.26 0.33 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -27.06 379.01 -11.15 -38.20 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -10.45 Total: 0.94 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -1.12 Total: -26.15 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.26 Total: -35.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.06 -11.15 -38.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170600430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.494 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds