Wall clock time and date at job start Tue Mar 31 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46878 * 2 1 4 4 C 1.53008 * 109.46830 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47118 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47166 * 173.84856 * 6 5 4 8 8 H 1.09007 * 109.47031 * 304.30542 * 7 6 5 9 9 C 1.52998 * 109.47351 * 184.30022 * 7 6 5 10 10 C 1.52994 * 109.47122 * 177.14647 * 9 7 6 11 11 N 1.46900 * 109.47148 * 64.29786 * 7 6 5 12 12 C 1.46845 * 111.00463 * 272.39114 * 11 7 6 13 13 C 1.53036 * 109.52681 * 185.83830 * 12 11 7 14 14 C 1.53198 * 109.29679 * 300.82170 * 13 12 11 15 15 C 1.53115 * 109.12285 * 57.62743 * 14 13 12 16 16 H 1.09005 * 109.50244 * 62.32165 * 15 14 13 17 17 C 1.50697 * 109.50957 * 182.40162 * 15 14 13 18 18 H 1.07997 * 119.99939 * 119.91817 * 17 15 14 19 19 C 1.37875 * 120.00012 * 299.92247 * 17 15 14 20 20 N 1.31517 * 119.99901 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00251 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46861 * 59.99988 * 21 19 17 23 23 H 1.48500 * 109.47316 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47567 * 300.00502 * 21 19 17 25 25 C 1.46849 * 110.99644 * 36.59902 * 11 7 6 26 26 H 1.08998 * 109.46387 * 299.99471 * 1 2 3 27 27 H 1.08995 * 109.47273 * 59.99603 * 1 2 3 28 28 H 1.08996 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46427 * 240.00031 * 2 1 3 30 30 H 1.08995 * 109.47273 * 120.00397 * 2 1 3 31 31 H 1.08994 * 109.47636 * 60.00432 * 3 2 1 32 32 H 1.09003 * 109.47263 * 300.00008 * 3 2 1 33 33 H 1.08994 * 109.46978 * 59.99637 * 4 3 2 34 34 H 1.09003 * 109.46884 * 299.99848 * 4 3 2 35 35 H 1.09006 * 109.47020 * 59.99886 * 5 4 3 36 36 H 1.08996 * 109.47058 * 300.00432 * 5 4 3 37 37 H 1.08997 * 109.46883 * 53.85203 * 6 5 4 38 38 H 1.08996 * 109.46991 * 293.85144 * 6 5 4 39 39 H 1.09003 * 109.46905 * 297.14925 * 9 7 6 40 40 H 1.08999 * 109.46740 * 57.14451 * 9 7 6 41 41 H 1.09003 * 109.47461 * 305.03200 * 10 9 7 42 42 H 1.08998 * 109.46940 * 65.03168 * 10 9 7 43 43 H 1.08998 * 109.47384 * 185.02748 * 10 9 7 44 44 H 1.09005 * 109.46098 * 305.85578 * 12 11 7 45 45 H 1.09007 * 109.46237 * 65.82113 * 12 11 7 46 46 H 1.08994 * 109.50317 * 60.75842 * 13 12 11 47 47 H 1.09001 * 109.50333 * 180.84269 * 13 12 11 48 48 H 1.09006 * 109.51685 * 297.75187 * 14 13 12 49 49 H 1.09005 * 109.57802 * 177.54264 * 14 13 12 50 50 H 0.97003 * 119.99785 * 179.97438 * 20 19 17 51 51 H 1.08996 * 109.46415 * 54.14844 * 25 11 7 52 52 H 1.08994 * 109.45851 * 294.16543 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0013 7 6 6.1201 4.3190 -0.1565 8 1 5.6951 4.7602 -1.0582 9 6 7.6463 4.3088 -0.2642 10 6 8.1512 5.7351 -0.4906 11 7 5.7171 5.1114 1.0130 12 6 4.3833 5.6944 0.8194 13 6 4.0582 6.6271 1.9884 14 6 4.1034 5.8327 3.2975 15 6 5.4875 5.1960 3.4504 16 1 6.2435 5.9789 3.5111 17 6 5.5228 4.3640 4.7064 18 1 5.7283 3.3055 4.6472 19 6 5.2927 4.9543 5.9310 20 7 5.0419 6.2433 6.0029 21 14 5.3358 3.9229 7.4878 22 1 6.6777 3.3038 7.6344 23 1 5.0594 4.7882 8.6626 24 1 4.3054 2.8569 7.4041 25 6 5.7711 4.3048 2.2390 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9338 0.9285 0.8892 35 1 3.7171 3.3991 0.8887 36 1 3.7164 3.3985 -0.8912 37 1 5.9734 2.2784 -0.8308 38 1 5.9734 2.4698 0.9388 39 1 8.0729 3.9144 0.6581 40 1 7.9471 3.6795 -1.1018 41 1 7.6563 6.1615 -1.3633 42 1 7.9285 6.3428 0.3864 43 1 9.2283 5.7173 -0.6563 44 1 4.3659 6.2600 -0.1122 45 1 3.6415 4.8970 0.7739 46 1 4.7917 7.4325 2.0262 47 1 3.0621 7.0481 1.8519 48 1 3.3435 5.0515 3.2759 49 1 3.9154 6.5017 4.1374 50 1 4.8797 6.6585 6.8644 51 1 6.7618 3.8613 2.3385 52 1 5.0227 3.5142 2.1868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170600430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:22 Heat of formation + Delta-G solvation = -53.423821 kcal Electronic energy + Delta-G solvation = -23950.216890 eV Core-core repulsion = 20947.325150 eV Total energy + Delta-G solvation = -3002.891740 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75181 -37.42961 -36.50900 -34.59069 -33.73888 -32.04482 -31.66168 -29.87280 -27.07001 -26.93433 -24.64376 -23.79418 -23.14480 -21.92019 -21.80865 -20.86661 -19.93206 -18.41369 -17.27404 -16.68861 -16.34573 -15.90412 -15.60530 -15.25489 -14.94544 -14.80524 -14.66774 -14.29185 -14.04332 -13.92296 -13.82318 -13.56920 -13.34014 -12.97366 -12.89486 -12.82330 -12.57858 -12.51599 -12.31699 -12.28027 -12.07222 -11.88513 -11.76293 -11.73667 -11.65379 -11.45880 -11.43115 -11.29748 -11.27917 -11.00619 -10.76146 -10.54368 -10.34646 -8.79316 -8.06245 -6.19997 1.40082 1.41155 1.48724 2.42952 3.20402 3.22020 3.67351 3.95900 4.07610 4.11380 4.20241 4.24836 4.29984 4.40484 4.41851 4.49468 4.54607 4.57658 4.63102 4.68675 4.77052 4.79808 4.84998 4.86645 4.91039 4.95848 4.98821 5.02679 5.06111 5.10314 5.14492 5.18977 5.24226 5.24339 5.26374 5.30064 5.34240 5.40808 5.43980 5.47987 5.51242 5.55426 5.61080 5.63263 5.66255 6.03810 6.20146 6.29417 6.54576 6.57628 6.93847 7.47609 8.98006 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.005838 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.180229 B = 4795.334925 C = 6524.640446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.144 4.144 7 C 0.083 3.917 8 H 0.085 0.915 9 C -0.108 4.108 10 C -0.135 4.135 11 N -0.535 5.535 12 C 0.054 3.946 13 C -0.111 4.111 14 C -0.099 4.099 15 C 0.053 3.947 16 H -0.010 1.010 17 C -0.533 4.533 18 H 0.048 0.952 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.949 3.051 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.087 3.913 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.044 0.956 47 H 0.064 0.936 48 H 0.020 0.980 49 H 0.053 0.947 50 H 0.259 0.741 51 H 0.044 0.956 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 -7.878 -16.545 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.183 4.183 7 C -0.025 4.025 8 H 0.104 0.896 9 C -0.146 4.146 10 C -0.192 4.192 11 N -0.259 5.259 12 C -0.074 4.074 13 C -0.149 4.149 14 C -0.138 4.138 15 C 0.034 3.966 16 H 0.008 0.992 17 C -0.572 4.572 18 H 0.066 0.934 19 C -0.183 4.183 20 N -0.555 5.555 21 Si 0.775 3.225 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.040 4.040 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.062 0.938 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.196 -7.345 -16.371 18.226 hybrid contribution -0.447 -0.822 1.499 1.767 sum -3.643 -8.167 -14.872 17.354 Atomic orbital electron populations 1.21781 0.95471 1.01978 1.01771 1.21527 0.96266 0.96373 1.01964 1.21600 0.95221 0.97199 1.01580 1.21554 0.95537 0.96307 1.01672 1.21899 0.95365 0.97259 1.01617 1.22225 0.95859 0.98022 1.02176 1.21881 0.95921 0.91579 0.93135 0.89642 1.21489 0.94279 0.97815 1.00999 1.21551 0.99923 0.96563 1.01209 1.62061 1.26685 1.34908 1.02246 1.22353 0.89873 0.97318 0.97817 1.21600 0.99995 0.98056 0.95256 1.21422 0.97821 0.98093 0.96439 1.18585 0.93007 0.93531 0.91447 0.99218 1.21490 1.48012 0.94917 0.92764 0.93378 1.25681 0.94945 0.95899 1.01806 1.70038 1.49073 1.11116 1.25265 0.85754 0.78702 0.78791 0.79261 1.19731 1.20901 1.19748 1.21926 0.98314 0.94393 0.89377 0.93460 0.92223 0.92030 0.91212 0.92827 0.93649 0.91396 0.90913 0.93542 0.92949 0.91210 0.90178 0.93148 0.94016 0.90218 0.92433 0.94162 0.92853 0.90164 0.93448 0.93676 0.91740 0.96144 0.92836 0.93182 0.93765 0.95405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.91 71.99 0.71 -1.85 16 2 C -0.12 -2.29 5.93 30.60 0.18 -2.11 16 3 C -0.12 -2.51 5.21 30.60 0.16 -2.35 16 4 C -0.11 -2.54 5.21 30.60 0.16 -2.38 16 5 C -0.12 -3.12 3.57 30.59 0.11 -3.01 16 6 C -0.14 -3.70 4.16 30.59 0.13 -3.57 16 7 C 0.08 2.26 1.97 44.91 0.09 2.35 16 8 H 0.09 2.07 7.66 -2.38 -0.02 2.05 16 9 C -0.11 -2.79 5.52 30.59 0.17 -2.62 16 10 C -0.14 -3.48 9.72 71.98 0.70 -2.78 16 11 N -0.53 -18.68 3.94 -871.10 -3.43 -22.11 16 12 C 0.05 1.77 4.98 86.33 0.43 2.20 16 13 C -0.11 -4.36 6.09 30.67 0.19 -4.17 16 14 C -0.10 -4.87 5.03 30.70 0.15 -4.72 16 15 C 0.05 2.76 2.26 -11.49 -0.03 2.74 16 16 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 17 C -0.53 -30.22 8.56 25.60 0.22 -30.01 16 18 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 19 C 0.02 0.87 5.30 84.65 0.45 1.32 16 20 N -0.92 -54.34 11.35 21.45 0.24 -54.10 16 21 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.09 3.70 3.21 86.33 0.28 3.98 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.63 4.13 -2.38 -0.01 1.62 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.54 6.14 -2.39 -0.01 1.52 16 39 H 0.04 1.25 7.22 -2.39 -0.02 1.23 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.04 1.27 7.84 -2.39 -0.02 1.25 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 2.25 7.90 -2.38 -0.02 2.23 16 45 H 0.05 1.53 4.53 -2.38 -0.01 1.52 16 46 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.05 2.98 6.15 -2.38 -0.01 2.97 16 50 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 51 H 0.04 1.93 6.95 -2.39 -0.02 1.92 16 52 H 0.03 1.18 5.07 -2.39 -0.01 1.17 16 Total: -1.00 -60.69 379.01 3.76 -56.92 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.83 Total: 19.62 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 4.10 Total: -46.98 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -3.19 Total: -76.21 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.69 3.76 -56.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170600430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.500 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds