Wall clock time and date at job start Tue Mar 31 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47026 * 2 1 4 4 C 1.53003 * 109.46660 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46791 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47225 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47255 * 186.10808 * 6 5 4 8 8 H 1.09004 * 109.47154 * 55.82140 * 7 6 5 9 9 C 1.53001 * 109.47219 * 175.82003 * 7 6 5 10 10 C 1.52997 * 109.47440 * 181.91317 * 9 7 6 11 11 N 1.46894 * 109.47423 * 295.82138 * 7 6 5 12 12 C 1.46844 * 111.00055 * 323.65574 * 11 7 6 13 13 C 1.53038 * 109.52702 * 185.84000 * 12 11 7 14 14 C 1.53122 * 109.27643 * 300.82092 * 13 12 11 15 15 C 1.53128 * 109.15955 * 57.65380 * 14 13 12 16 16 H 1.08995 * 109.49980 * 62.28345 * 15 14 13 17 17 C 1.50698 * 109.50085 * 182.36465 * 15 14 13 18 18 H 1.08004 * 119.99832 * 120.00145 * 17 15 14 19 19 C 1.37877 * 120.00357 * 299.99780 * 17 15 14 20 20 N 1.31522 * 119.99776 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00391 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46872 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47335 * 120.00071 * 21 19 17 24 24 H 1.48505 * 109.47094 * 240.00353 * 21 19 17 25 25 C 1.46851 * 111.00259 * 87.86682 * 11 7 6 26 26 H 1.08997 * 109.47073 * 300.00186 * 1 2 3 27 27 H 1.08995 * 109.46895 * 60.00611 * 1 2 3 28 28 H 1.09000 * 109.46898 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47564 * 239.99252 * 2 1 3 30 30 H 1.09001 * 109.46800 * 119.99804 * 2 1 3 31 31 H 1.08997 * 109.47347 * 59.99982 * 3 2 1 32 32 H 1.09001 * 109.46639 * 299.99027 * 3 2 1 33 33 H 1.08997 * 109.47714 * 59.99934 * 4 3 2 34 34 H 1.08995 * 109.47145 * 299.99317 * 4 3 2 35 35 H 1.09000 * 109.47427 * 59.99974 * 5 4 3 36 36 H 1.09001 * 109.47408 * 299.99883 * 5 4 3 37 37 H 1.09002 * 109.47211 * 66.11244 * 6 5 4 38 38 H 1.08993 * 109.47392 * 306.11085 * 6 5 4 39 39 H 1.08998 * 109.47503 * 61.91251 * 9 7 6 40 40 H 1.09011 * 109.47199 * 301.90955 * 9 7 6 41 41 H 1.09002 * 109.47654 * 174.98759 * 10 9 7 42 42 H 1.09010 * 109.47447 * 54.98908 * 10 9 7 43 43 H 1.08997 * 109.47322 * 294.99348 * 10 9 7 44 44 H 1.08996 * 109.46123 * 305.85619 * 12 11 7 45 45 H 1.09005 * 109.46273 * 65.83187 * 12 11 7 46 46 H 1.08997 * 109.50373 * 60.75868 * 13 12 11 47 47 H 1.09001 * 109.50662 * 180.84436 * 13 12 11 48 48 H 1.08999 * 109.52447 * 177.55267 * 14 13 12 49 49 H 1.09002 * 109.52555 * 297.75201 * 14 13 12 50 50 H 0.97000 * 119.99881 * 180.02562 * 20 19 17 51 51 H 1.08999 * 109.46074 * 294.18212 * 25 11 7 52 52 H 1.09004 * 109.45805 * 54.14588 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0013 7 6 6.1199 4.3193 0.1541 8 1 5.6960 4.7615 1.0558 9 6 7.6462 4.3095 0.2601 10 6 8.1528 5.7391 0.4608 11 7 5.7154 5.1101 -1.0158 12 6 5.7625 4.3005 -2.2400 13 6 5.4776 5.1897 -3.4526 14 6 4.0962 5.8314 -3.2955 15 6 4.0582 6.6291 -1.9890 16 1 4.7943 7.4319 -2.0313 17 6 2.6836 7.2163 -1.7978 18 1 2.1009 6.9545 -0.9269 19 6 2.1698 8.0877 -2.7346 20 7 2.8792 8.4061 -3.7953 21 14 0.4661 8.8162 -2.4973 22 1 -0.1199 8.3030 -1.2329 23 1 0.5654 10.2963 -2.4314 24 1 -0.4013 8.4285 -3.6386 25 6 4.3843 5.6982 -0.8190 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9562 -0.8901 33 1 3.9338 0.9284 -0.8890 34 1 3.9329 0.9288 0.8909 35 1 3.7163 3.3993 0.8895 36 1 3.7171 3.3982 -0.8904 37 1 5.9742 2.4680 -0.9377 38 1 5.9727 2.2799 0.8322 39 1 8.0714 3.8986 -0.6555 40 1 7.9476 3.6948 1.1085 41 1 9.2302 5.7232 0.6251 42 1 7.6597 6.1812 1.3266 43 1 7.9293 6.3317 -0.4263 44 1 6.7513 3.8534 -2.3419 45 1 5.0116 3.5124 -2.1834 46 1 6.2359 5.9699 -3.5179 47 1 5.4978 4.5857 -4.3597 48 1 3.9072 6.4995 -4.1357 49 1 3.3337 5.0528 -3.2691 50 1 2.5178 9.0195 -4.4542 51 1 3.6400 4.9034 -0.7688 52 1 4.3722 6.2661 0.1113 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170600436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:29 Heat of formation + Delta-G solvation = -41.833180 kcal Electronic energy + Delta-G solvation = -23939.817734 eV Core-core repulsion = 20937.428601 eV Total energy + Delta-G solvation = -3002.389132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.36154 -36.27474 -35.15610 -32.77881 -32.62156 -30.68767 -29.85446 -28.76964 -25.96651 -24.93889 -23.24745 -22.44054 -21.74546 -21.02490 -20.71445 -19.30462 -18.37992 -16.46259 -15.91791 -15.41816 -14.72639 -14.61329 -14.34420 -14.01418 -13.86393 -13.43401 -13.15882 -12.97149 -12.81474 -12.62357 -12.37778 -12.16649 -11.88048 -11.79490 -11.45738 -11.34308 -11.28816 -11.12509 -10.94902 -10.89151 -10.77528 -10.70267 -10.56078 -10.53448 -10.36990 -10.18913 -10.04245 -9.99168 -9.70862 -9.35098 -8.90591 -8.63361 -8.25576 -7.36115 -5.93384 -3.99079 3.31514 3.39756 3.43193 4.43194 4.59800 4.69552 4.89283 5.04431 5.06567 5.17977 5.30125 5.36741 5.40864 5.51833 5.55824 5.57721 5.72566 5.75730 5.78623 5.82298 5.84660 5.91525 5.94891 6.00561 6.05777 6.08206 6.11892 6.15738 6.21556 6.25785 6.30254 6.32113 6.40999 6.43001 6.48194 6.59056 6.61435 6.68783 6.75731 6.81936 6.88990 7.07930 7.29710 7.49170 7.78968 7.83319 7.97162 8.16164 8.24393 8.54535 9.05747 9.65084 11.12471 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.006218 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.868155 B = 4501.759419 C = 6664.678675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.133 4.133 6 C -0.146 4.146 7 C 0.080 3.920 8 H 0.071 0.929 9 C -0.107 4.107 10 C -0.140 4.140 11 N -0.526 5.526 12 C 0.060 3.940 13 C -0.118 4.118 14 C -0.108 4.108 15 C 0.055 3.945 16 H 0.031 0.969 17 C -0.511 4.511 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.887 3.113 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.055 3.945 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.088 0.912 49 H 0.027 0.973 50 H 0.258 0.742 51 H 0.036 0.964 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -13.880 6.856 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.160 4.160 4 C -0.153 4.153 5 C -0.170 4.170 6 C -0.185 4.185 7 C -0.029 4.029 8 H 0.090 0.910 9 C -0.145 4.145 10 C -0.198 4.198 11 N -0.250 5.250 12 C -0.068 4.068 13 C -0.156 4.156 14 C -0.147 4.147 15 C 0.036 3.964 16 H 0.049 0.951 17 C -0.550 4.550 18 H 0.071 0.929 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.071 4.071 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.107 0.893 49 H 0.046 0.954 50 H 0.068 0.932 51 H 0.054 0.946 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.441 -13.375 6.647 15.582 hybrid contribution -1.541 -0.258 0.174 1.572 sum 2.900 -13.633 6.821 15.518 Atomic orbital electron populations 1.21785 0.96075 1.01221 1.02014 1.21528 0.95733 0.97258 1.01560 1.21640 0.95618 0.96299 1.02446 1.21582 0.95224 0.97203 1.01269 1.22025 0.95370 0.96381 1.03218 1.22276 0.95892 0.98448 1.01895 1.21799 0.95020 0.91325 0.94723 0.91047 1.21472 0.95111 0.97420 1.00517 1.21611 0.98639 0.96942 1.02573 1.62124 1.29258 1.32641 1.00953 1.22106 0.98866 0.94882 0.90964 1.21693 1.00648 0.98385 0.94912 1.21626 0.91758 0.98196 1.03071 1.18652 0.96011 0.92630 0.89087 0.95061 1.21194 1.01116 1.25960 1.06709 0.92932 1.24922 0.97207 0.96368 0.95312 1.69907 1.36924 1.34982 1.10933 0.86626 0.84901 0.78991 0.78000 1.19896 1.21092 1.21154 1.22608 0.86610 0.97332 1.00570 0.92809 0.92595 0.93099 0.92270 0.92433 0.92108 0.91687 0.92460 0.92674 0.92211 0.89884 0.91554 0.92533 0.92476 0.92955 0.94258 0.93492 0.91141 0.92827 0.94982 0.92346 0.93901 0.89328 0.95377 0.93212 0.94615 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.25 5.93 -26.73 -0.16 -1.41 16 3 C -0.12 -1.45 5.21 -26.73 -0.14 -1.59 16 4 C -0.12 -1.37 5.21 -26.73 -0.14 -1.51 16 5 C -0.13 -1.84 3.56 -26.73 -0.10 -1.94 16 6 C -0.15 -1.92 4.16 -26.73 -0.11 -2.03 16 7 C 0.08 1.18 1.98 -67.72 -0.13 1.05 16 8 H 0.07 1.09 7.66 -51.93 -0.40 0.70 16 9 C -0.11 -1.40 5.52 -26.73 -0.15 -1.55 16 10 C -0.14 -1.91 9.70 37.16 0.36 -1.55 16 11 N -0.53 -9.31 3.90 -226.70 -0.88 -10.20 16 12 C 0.06 1.03 3.99 -3.84 -0.02 1.01 16 13 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 14 C -0.11 -2.56 5.02 -26.60 -0.13 -2.69 16 15 C 0.05 1.36 2.26 -91.69 -0.21 1.16 16 16 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.51 -13.95 8.57 -34.44 -0.30 -14.24 16 18 H 0.05 1.42 7.75 -52.48 -0.41 1.02 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.44 11.35 55.43 0.63 -24.81 16 21 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.06 1.15 4.21 -3.83 -0.02 1.13 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.37 4.12 -51.93 -0.21 1.16 16 37 H 0.07 0.89 6.14 -51.93 -0.32 0.57 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.76 7.25 -51.93 -0.38 0.38 16 40 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.07 1.11 7.81 -51.93 -0.41 0.70 16 44 H 0.05 0.84 6.97 -51.93 -0.36 0.48 16 45 H 0.03 0.55 5.05 -51.93 -0.26 0.29 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 49 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.04 0.73 4.55 -51.93 -0.24 0.50 16 52 H 0.05 1.13 7.90 -51.93 -0.41 0.72 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -27.07 378.97 -11.14 -38.21 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -10.45 Total: 0.86 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.12 Total: -26.10 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.25 Total: -35.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.07 -11.14 -38.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170600436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.623 kcal (2) G-P(sol) polarization free energy of solvation -27.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds