Wall clock time and date at job start Tue Mar 31 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47026 * 2 1 4 4 C 1.53003 * 109.46660 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46791 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47225 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47255 * 186.10808 * 6 5 4 8 8 H 1.09004 * 109.47154 * 55.82140 * 7 6 5 9 9 C 1.53001 * 109.47219 * 175.82003 * 7 6 5 10 10 C 1.52997 * 109.47440 * 181.91317 * 9 7 6 11 11 N 1.46894 * 109.47423 * 295.82138 * 7 6 5 12 12 C 1.46844 * 111.00055 * 323.65574 * 11 7 6 13 13 C 1.53038 * 109.52702 * 185.84000 * 12 11 7 14 14 C 1.53122 * 109.27643 * 300.82092 * 13 12 11 15 15 C 1.53128 * 109.15955 * 57.65380 * 14 13 12 16 16 H 1.08995 * 109.49980 * 62.28345 * 15 14 13 17 17 C 1.50698 * 109.50085 * 182.36465 * 15 14 13 18 18 H 1.08004 * 119.99832 * 120.00145 * 17 15 14 19 19 C 1.37877 * 120.00357 * 299.99780 * 17 15 14 20 20 N 1.31522 * 119.99776 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00391 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46872 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47335 * 120.00071 * 21 19 17 24 24 H 1.48505 * 109.47094 * 240.00353 * 21 19 17 25 25 C 1.46851 * 111.00259 * 87.86682 * 11 7 6 26 26 H 1.08997 * 109.47073 * 300.00186 * 1 2 3 27 27 H 1.08995 * 109.46895 * 60.00611 * 1 2 3 28 28 H 1.09000 * 109.46898 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47564 * 239.99252 * 2 1 3 30 30 H 1.09001 * 109.46800 * 119.99804 * 2 1 3 31 31 H 1.08997 * 109.47347 * 59.99982 * 3 2 1 32 32 H 1.09001 * 109.46639 * 299.99027 * 3 2 1 33 33 H 1.08997 * 109.47714 * 59.99934 * 4 3 2 34 34 H 1.08995 * 109.47145 * 299.99317 * 4 3 2 35 35 H 1.09000 * 109.47427 * 59.99974 * 5 4 3 36 36 H 1.09001 * 109.47408 * 299.99883 * 5 4 3 37 37 H 1.09002 * 109.47211 * 66.11244 * 6 5 4 38 38 H 1.08993 * 109.47392 * 306.11085 * 6 5 4 39 39 H 1.08998 * 109.47503 * 61.91251 * 9 7 6 40 40 H 1.09011 * 109.47199 * 301.90955 * 9 7 6 41 41 H 1.09002 * 109.47654 * 174.98759 * 10 9 7 42 42 H 1.09010 * 109.47447 * 54.98908 * 10 9 7 43 43 H 1.08997 * 109.47322 * 294.99348 * 10 9 7 44 44 H 1.08996 * 109.46123 * 305.85619 * 12 11 7 45 45 H 1.09005 * 109.46273 * 65.83187 * 12 11 7 46 46 H 1.08997 * 109.50373 * 60.75868 * 13 12 11 47 47 H 1.09001 * 109.50662 * 180.84436 * 13 12 11 48 48 H 1.08999 * 109.52447 * 177.55267 * 14 13 12 49 49 H 1.09002 * 109.52555 * 297.75201 * 14 13 12 50 50 H 0.97000 * 119.99881 * 180.02562 * 20 19 17 51 51 H 1.08999 * 109.46074 * 294.18212 * 25 11 7 52 52 H 1.09004 * 109.45805 * 54.14588 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0013 7 6 6.1199 4.3193 0.1541 8 1 5.6960 4.7615 1.0558 9 6 7.6462 4.3095 0.2601 10 6 8.1528 5.7391 0.4608 11 7 5.7154 5.1101 -1.0158 12 6 5.7625 4.3005 -2.2400 13 6 5.4776 5.1897 -3.4526 14 6 4.0962 5.8314 -3.2955 15 6 4.0582 6.6291 -1.9890 16 1 4.7943 7.4319 -2.0313 17 6 2.6836 7.2163 -1.7978 18 1 2.1009 6.9545 -0.9269 19 6 2.1698 8.0877 -2.7346 20 7 2.8792 8.4061 -3.7953 21 14 0.4661 8.8162 -2.4973 22 1 -0.1199 8.3030 -1.2329 23 1 0.5654 10.2963 -2.4314 24 1 -0.4013 8.4285 -3.6386 25 6 4.3843 5.6982 -0.8190 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9562 -0.8901 33 1 3.9338 0.9284 -0.8890 34 1 3.9329 0.9288 0.8909 35 1 3.7163 3.3993 0.8895 36 1 3.7171 3.3982 -0.8904 37 1 5.9742 2.4680 -0.9377 38 1 5.9727 2.2799 0.8322 39 1 8.0714 3.8986 -0.6555 40 1 7.9476 3.6948 1.1085 41 1 9.2302 5.7232 0.6251 42 1 7.6597 6.1812 1.3266 43 1 7.9293 6.3317 -0.4263 44 1 6.7513 3.8534 -2.3419 45 1 5.0116 3.5124 -2.1834 46 1 6.2359 5.9699 -3.5179 47 1 5.4978 4.5857 -4.3597 48 1 3.9072 6.4995 -4.1357 49 1 3.3337 5.0528 -3.2691 50 1 2.5178 9.0195 -4.4542 51 1 3.6400 4.9034 -0.7688 52 1 4.3722 6.2661 0.1113 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170600436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:28 Heat of formation + Delta-G solvation = -53.544841 kcal Electronic energy + Delta-G solvation = -23940.325590 eV Core-core repulsion = 20937.428601 eV Total energy + Delta-G solvation = -3002.896988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75898 -37.44215 -36.54753 -34.49499 -33.74152 -32.14231 -31.62744 -29.89729 -27.15067 -26.86348 -24.49324 -23.70579 -23.41987 -21.91792 -21.83182 -20.76938 -19.95810 -18.35719 -17.23203 -16.66772 -16.52496 -15.93626 -15.63333 -15.22519 -14.92494 -14.83399 -14.65704 -14.22371 -14.01254 -13.94511 -13.87832 -13.58616 -13.20322 -13.03209 -12.88365 -12.80930 -12.60165 -12.52523 -12.31905 -12.27705 -12.08069 -11.89697 -11.81427 -11.73429 -11.66695 -11.48643 -11.42546 -11.31671 -11.24552 -11.00676 -10.70259 -10.60309 -10.34108 -8.78696 -8.06827 -6.20490 1.38194 1.40064 1.51048 2.42511 3.19940 3.21963 3.66926 3.95561 4.06932 4.11068 4.20121 4.24539 4.30200 4.36467 4.41899 4.48453 4.56776 4.59782 4.64062 4.68063 4.75919 4.76412 4.84207 4.86966 4.93451 4.95819 4.99164 4.99670 5.08179 5.11284 5.15062 5.16778 5.22664 5.26013 5.27200 5.30594 5.34390 5.40783 5.43172 5.46872 5.51635 5.54991 5.59046 5.65149 5.66279 6.03693 6.19362 6.29386 6.54818 6.56486 6.93712 7.47275 8.97762 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.006218 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.868155 B = 4501.759419 C = 6664.678675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.108 4.108 5 C -0.130 4.130 6 C -0.138 4.138 7 C 0.078 3.922 8 H 0.063 0.937 9 C -0.101 4.101 10 C -0.139 4.139 11 N -0.534 5.534 12 C 0.067 3.933 13 C -0.113 4.113 14 C -0.099 4.099 15 C 0.054 3.946 16 H -0.010 1.010 17 C -0.531 4.531 18 H 0.048 0.952 19 C 0.015 3.985 20 N -0.916 5.916 21 Si 0.949 3.051 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.280 1.280 25 C 0.072 3.928 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.038 0.962 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.020 0.980 50 H 0.259 0.741 51 H 0.040 0.960 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 -16.227 8.042 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.161 4.161 4 C -0.145 4.145 5 C -0.167 4.167 6 C -0.176 4.176 7 C -0.030 4.030 8 H 0.081 0.919 9 C -0.139 4.139 10 C -0.196 4.196 11 N -0.258 5.258 12 C -0.061 4.061 13 C -0.150 4.150 14 C -0.137 4.137 15 C 0.035 3.965 16 H 0.008 0.992 17 C -0.569 4.569 18 H 0.067 0.933 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.775 3.225 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.055 4.055 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.039 0.961 50 H 0.068 0.932 51 H 0.057 0.943 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.067 -15.732 7.843 18.294 hybrid contribution -1.716 0.511 -0.183 1.800 sum 3.351 -15.221 7.659 17.366 Atomic orbital electron populations 1.21799 0.95890 1.02006 1.01544 1.21502 0.95924 0.95966 1.02309 1.21634 0.95920 0.97367 1.01179 1.21523 0.94925 0.95819 1.02253 1.21930 0.96164 0.97381 1.01209 1.22200 0.94970 0.97371 1.03098 1.21905 0.96413 0.91887 0.92807 0.91858 1.21455 0.93316 0.97280 1.01843 1.21578 0.99979 0.97057 1.00988 1.62055 1.27044 1.34109 1.02588 1.22064 1.00460 0.94151 0.89417 1.21611 0.97414 0.98589 0.97428 1.21405 0.94184 0.97224 1.00932 1.18569 0.93814 0.92474 0.91622 0.99218 1.21547 1.02322 1.26465 1.06610 0.93334 1.25686 1.00859 0.96805 0.95037 1.70053 1.38515 1.35417 1.11576 0.85639 0.80501 0.78177 0.78152 1.19228 1.20667 1.20598 1.22247 0.88683 0.96639 0.97954 0.92882 0.93516 0.91687 0.91913 0.91195 0.92634 0.93768 0.92018 0.90946 0.93150 0.92932 0.91112 0.90093 0.92056 0.90306 0.92296 0.93944 0.93976 0.90104 0.94402 0.93633 0.91752 0.92824 0.96104 0.93191 0.94251 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.12 -2.20 5.93 30.59 0.18 -2.02 16 3 C -0.12 -2.79 5.21 30.59 0.16 -2.63 16 4 C -0.11 -2.32 5.21 30.59 0.16 -2.16 16 5 C -0.13 -3.41 3.56 30.59 0.11 -3.30 16 6 C -0.14 -3.21 4.16 30.59 0.13 -3.08 16 7 C 0.08 2.15 1.98 44.92 0.09 2.24 16 8 H 0.06 1.86 7.66 -2.39 -0.02 1.84 16 9 C -0.10 -2.34 5.52 30.59 0.17 -2.17 16 10 C -0.14 -3.55 9.70 71.98 0.70 -2.85 16 11 N -0.53 -18.71 3.90 -871.13 -3.40 -22.11 16 12 C 0.07 2.20 3.99 86.33 0.34 2.55 16 13 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 14 C -0.10 -4.85 5.02 30.68 0.15 -4.70 16 15 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16 16 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 17 C -0.53 -30.06 8.57 25.60 0.22 -29.84 16 18 H 0.05 2.71 7.75 -2.91 -0.02 2.69 16 19 C 0.01 0.83 5.30 84.65 0.45 1.28 16 20 N -0.92 -54.34 11.35 21.45 0.24 -54.10 16 21 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C 0.07 3.07 4.21 86.32 0.36 3.43 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.72 4.12 -2.39 -0.01 1.71 16 37 H 0.07 1.63 6.14 -2.39 -0.01 1.61 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.40 7.25 -2.39 -0.02 1.38 16 40 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.04 1.31 7.81 -2.39 -0.02 1.29 16 44 H 0.08 2.29 6.97 -2.39 -0.02 2.27 16 45 H 0.04 1.24 5.05 -2.38 -0.01 1.22 16 46 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.05 2.99 6.15 -2.39 -0.01 2.97 16 49 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 51 H 0.04 1.66 4.55 -2.39 -0.01 1.65 16 52 H 0.04 1.84 7.90 -2.39 -0.02 1.82 16 Total: -1.00 -60.69 378.97 3.80 -56.90 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.83 Total: 19.42 kcal Atomic # 6 Polarization: -50.87 SS G_CDS: 4.10 Total: -46.77 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -3.15 Total: -76.21 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.69 3.80 -56.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170600436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.350 kcal (2) G-P(sol) polarization free energy of solvation -60.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds