Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47066 * 2 1 4 4 C 1.52997 * 109.47004 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47182 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47004 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47234 * 55.00035 * 7 6 5 9 9 C 1.53002 * 109.47152 * 174.99948 * 7 6 5 10 10 C 1.53002 * 109.46943 * 295.70259 * 9 7 6 11 11 N 1.46894 * 109.47149 * 294.99994 * 7 6 5 12 12 C 1.46857 * 111.00003 * 293.85200 * 11 7 6 13 13 C 1.53035 * 109.52376 * 174.16274 * 12 11 7 14 14 C 1.53112 * 109.28010 * 59.17554 * 13 12 11 15 15 C 1.50703 * 109.52291 * 182.44148 * 14 13 12 16 16 H 1.08000 * 120.00005 * 119.68985 * 15 14 13 17 17 C 1.37874 * 120.00039 * 299.68031 * 15 14 13 18 18 N 1.31512 * 120.00123 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99822 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47667 * 89.99824 * 19 17 15 21 21 H 1.48508 * 109.46902 * 209.99249 * 19 17 15 22 22 H 1.48499 * 109.47116 * 329.99135 * 19 17 15 23 23 C 1.53120 * 109.16521 * 302.34499 * 14 13 12 24 24 C 1.46852 * 111.00184 * 169.64378 * 11 7 6 25 25 H 1.08996 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46925 * 299.99822 * 1 2 3 27 27 H 1.09003 * 109.46893 * 60.00227 * 1 2 3 28 28 H 1.09000 * 109.46925 * 240.00178 * 2 1 3 29 29 H 1.09002 * 109.47031 * 120.00311 * 2 1 3 30 30 H 1.09001 * 109.46814 * 59.99826 * 3 2 1 31 31 H 1.08997 * 109.46583 * 300.00161 * 3 2 1 32 32 H 1.09006 * 109.47019 * 59.99443 * 4 3 2 33 33 H 1.09002 * 109.47009 * 300.00259 * 4 3 2 34 34 H 1.09000 * 109.46820 * 60.00286 * 5 4 3 35 35 H 1.08993 * 109.47396 * 300.00294 * 5 4 3 36 36 H 1.08998 * 109.47583 * 59.99919 * 6 5 4 37 37 H 1.09007 * 109.47342 * 299.99832 * 6 5 4 38 38 H 1.09007 * 109.47174 * 55.69749 * 9 7 6 39 39 H 1.08997 * 109.47187 * 175.70030 * 9 7 6 40 40 H 1.08998 * 109.46953 * 306.07894 * 10 9 7 41 41 H 1.09002 * 109.47526 * 66.08047 * 10 9 7 42 42 H 1.09008 * 109.47020 * 186.07809 * 10 9 7 43 43 H 1.09004 * 109.45762 * 294.17420 * 12 11 7 44 44 H 1.09001 * 109.46157 * 54.14207 * 12 11 7 45 45 H 1.09007 * 109.50046 * 299.23692 * 13 12 11 46 46 H 1.08994 * 109.50438 * 179.11993 * 13 12 11 47 47 H 1.08998 * 109.52490 * 62.24927 * 14 13 12 48 48 H 0.97001 * 119.99814 * 180.02562 * 18 17 15 49 49 H 1.08994 * 109.50552 * 297.71555 * 23 14 13 50 50 H 1.08997 * 109.50652 * 177.59369 * 23 14 13 51 51 H 1.09000 * 109.45779 * 305.85519 * 24 11 7 52 52 H 1.08992 * 109.45946 * 65.82212 * 24 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0013 7 6 6.1200 4.3275 -0.0013 8 1 5.6854 4.8665 0.8405 9 6 7.6449 4.3293 0.1244 10 6 8.0455 3.7424 1.4794 11 7 5.7314 4.9842 -1.2565 12 6 6.4158 4.3739 -2.4036 13 6 5.8801 4.9824 -3.7016 14 6 6.1183 6.4948 -3.6869 15 6 5.5392 7.1080 -4.9359 16 1 4.7622 7.8543 -4.8609 17 6 6.0016 6.7163 -6.1743 18 7 5.4967 7.2517 -7.2642 19 14 7.3453 5.4251 -6.3041 20 1 6.7296 4.0761 -6.3828 21 1 8.1532 5.6725 -7.5254 22 1 8.2214 5.5004 -5.1074 23 6 5.4359 7.0992 -2.4566 24 6 5.9845 6.4294 -1.1946 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 3.7171 3.3990 0.8887 35 1 3.7164 3.3986 -0.8912 36 1 5.9734 2.3707 -0.8910 37 1 5.9734 2.3715 0.8890 38 1 8.0761 3.7262 -0.6746 39 1 8.0145 5.3518 0.0478 40 1 7.5283 4.2787 2.2749 41 1 7.7713 2.6880 1.5141 42 1 9.1226 3.8423 1.6145 43 1 7.4869 4.5618 -2.3293 44 1 6.2349 3.2990 -2.4046 45 1 4.8116 4.7830 -3.7831 46 1 6.3993 4.5405 -4.5520 47 1 7.1889 6.6947 -3.6445 48 1 5.8218 6.9759 -8.1355 49 1 4.3605 6.9332 -2.5185 50 1 5.6378 8.1696 -2.4175 51 1 5.4904 6.8474 -0.3175 52 1 7.0576 6.6075 -1.1261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170601611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = -43.617310 kcal Electronic energy + Delta-G solvation = -23458.130538 eV Core-core repulsion = 20455.664040 eV Total energy + Delta-G solvation = -3002.466498 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.34295 -36.64347 -35.50759 -33.01075 -32.50927 -31.01907 -30.22341 -29.02563 -26.42241 -24.73443 -23.43942 -22.60300 -21.95414 -21.19663 -20.91608 -19.58260 -18.34373 -16.65260 -16.33486 -15.71634 -14.89249 -14.65276 -14.25209 -14.17076 -14.12062 -13.88926 -13.50775 -13.18270 -12.98937 -12.86843 -12.75415 -12.26956 -12.23499 -11.87282 -11.75917 -11.63099 -11.51572 -11.42463 -11.30130 -11.02948 -10.93892 -10.82314 -10.68013 -10.60037 -10.35218 -10.34305 -10.14708 -9.92542 -9.83268 -9.54207 -9.00613 -8.86115 -8.47082 -7.76574 -6.02250 -4.00066 3.29613 3.39599 3.41953 4.29411 4.45209 4.57447 4.81984 4.90507 4.94877 5.00588 5.13569 5.22046 5.29122 5.31656 5.35942 5.41548 5.55345 5.58927 5.63452 5.65914 5.68348 5.71731 5.83137 5.84832 5.87231 5.92549 5.96782 5.97636 5.99313 6.05949 6.06852 6.11402 6.15762 6.22306 6.25374 6.30926 6.36006 6.42283 6.48751 6.55542 6.63366 6.80704 6.91957 7.01151 7.28939 7.53326 7.63194 7.72081 7.84912 8.59318 9.02767 9.61204 11.11416 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.004523 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.614017 B = 6189.320890 C = 7461.899967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.110 4.110 7 C 0.084 3.916 8 H 0.076 0.924 9 C -0.160 4.160 10 C -0.146 4.146 11 N -0.523 5.523 12 C 0.052 3.948 13 C -0.115 4.115 14 C 0.014 3.986 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.268 1.268 23 C -0.096 4.096 24 C 0.056 3.944 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.026 0.974 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.020 0.980 48 H 0.262 0.738 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.060 0.940 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -12.233 18.214 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.025 4.025 8 H 0.094 0.906 9 C -0.199 4.199 10 C -0.204 4.204 11 N -0.246 5.246 12 C -0.075 4.075 13 C -0.153 4.153 14 C -0.005 4.005 15 C -0.546 4.546 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.193 1.193 23 C -0.133 4.133 24 C -0.072 4.072 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.938 -12.281 17.941 21.828 hybrid contribution 1.673 -0.622 -0.176 1.794 sum -0.265 -12.903 17.765 21.958 Atomic orbital electron populations 1.21786 0.96121 1.01304 1.01861 1.21547 0.95680 0.97357 1.01696 1.21621 0.95759 0.96256 1.02150 1.21618 0.95106 0.97613 1.01349 1.21491 0.94900 0.95682 1.02876 1.21682 0.96172 0.95500 1.01437 1.21791 0.92234 0.95455 0.93015 0.90584 1.22239 0.98320 1.01432 0.97923 1.21743 1.00654 1.00880 0.97101 1.62133 1.57592 1.03235 1.01675 1.22227 0.95438 0.98142 0.91707 1.21999 1.01226 0.98820 0.93259 1.19164 0.95823 0.91046 0.94441 1.21082 1.21630 1.23174 0.88751 0.90929 1.25022 0.96225 0.96211 0.95844 1.69905 1.43085 1.43542 0.97752 0.86848 0.82575 0.82024 0.76763 1.20610 1.22686 1.19283 1.21483 1.00662 0.98124 0.93067 1.22176 0.98065 0.87591 0.99329 0.93067 0.92887 0.92634 0.92166 0.92409 0.92274 0.91773 0.92322 0.92785 0.92768 0.90278 0.91952 0.92155 0.91742 0.91951 0.92896 0.92628 0.93253 0.95583 0.91860 0.91409 0.93654 0.96241 0.92802 0.91890 0.92609 0.92104 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.13 -1.10 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.17 5.21 -26.73 -0.14 -1.31 16 4 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 5 C -0.11 -1.29 5.10 -26.73 -0.14 -1.43 16 6 C -0.11 -1.27 4.47 -26.73 -0.12 -1.39 16 7 C 0.08 1.08 1.78 -67.71 -0.12 0.96 16 8 H 0.08 0.95 7.98 -51.93 -0.41 0.53 16 9 C -0.16 -1.96 4.59 -26.73 -0.12 -2.08 16 10 C -0.15 -1.44 9.50 37.16 0.35 -1.09 16 11 N -0.52 -8.33 4.06 -226.68 -0.92 -9.24 16 12 C 0.05 0.93 4.54 -3.83 -0.02 0.91 16 13 C -0.12 -2.51 4.84 -26.66 -0.13 -2.64 16 14 C 0.01 0.33 1.75 -91.65 -0.16 0.17 16 15 C -0.51 -14.41 9.14 -34.44 -0.31 -14.72 16 16 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 18 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 19 Si 0.89 22.33 24.36 -169.99 -4.14 18.19 16 20 H -0.28 -6.83 6.89 56.52 0.39 -6.44 16 21 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 23 C -0.10 -1.92 5.32 -26.65 -0.14 -2.06 16 24 C 0.06 0.93 5.14 -3.83 -0.02 0.91 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.10 7.75 -51.93 -0.40 0.70 16 36 H 0.06 0.78 6.24 -51.93 -0.32 0.46 16 37 H 0.06 0.61 6.45 -51.93 -0.33 0.28 16 38 H 0.06 0.85 6.72 -51.93 -0.35 0.50 16 39 H 0.06 0.82 6.65 -51.93 -0.35 0.48 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.51 6.74 -51.93 -0.35 0.16 16 42 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.03 0.47 6.67 -51.93 -0.35 0.12 16 44 H 0.06 1.03 6.14 -51.93 -0.32 0.72 16 45 H 0.07 1.52 8.14 -51.92 -0.42 1.10 16 46 H 0.05 1.05 3.38 -51.93 -0.18 0.87 16 47 H 0.02 0.48 7.19 -51.93 -0.37 0.11 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 52 H 0.03 0.43 6.80 -51.93 -0.35 0.08 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -29.22 375.97 -10.16 -39.38 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -10.44 Total: -1.35 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -1.10 Total: -25.37 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.15 Total: -36.52 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.22 -10.16 -39.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170601611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.241 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds