Wall clock time and date at job start Tue Mar 31 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47149 * 2 1 4 4 C 1.52995 * 109.47262 * 239.99455 * 2 1 3 5 5 C 1.53001 * 109.47084 * 175.00407 * 4 2 1 6 6 C 1.50703 * 109.47008 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99786 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99761 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00030 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99652 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46979 * 90.00090 * 10 8 6 12 12 H 1.48501 * 109.46826 * 210.00044 * 10 8 6 13 13 H 1.48496 * 109.47445 * 330.00135 * 10 8 6 14 14 N 1.46906 * 109.46679 * 119.99592 * 2 1 3 15 15 C 1.46896 * 110.99819 * 274.99963 * 14 2 1 16 16 C 1.53004 * 109.47196 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47181 * 180.02562 * 16 15 14 18 18 C 1.52989 * 109.47758 * 65.00268 * 17 16 15 19 19 C 1.52993 * 109.47372 * 195.94198 * 18 17 16 20 20 C 1.52987 * 109.49269 * 44.01535 * 19 18 17 21 21 C 1.53000 * 109.47764 * 247.07222 * 20 19 18 22 22 C 1.53013 * 109.43358 * 75.95147 * 21 20 19 23 23 C 1.52982 * 109.47549 * 284.04254 * 22 21 20 24 24 C 1.52988 * 109.49823 * 112.94076 * 23 22 21 25 25 H 1.08994 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47341 * 300.00744 * 1 2 3 27 27 H 1.09003 * 109.46825 * 60.00242 * 1 2 3 28 28 H 1.09001 * 109.47077 * 295.00263 * 4 2 1 29 29 H 1.09001 * 109.46990 * 55.00137 * 4 2 1 30 30 H 1.09001 * 109.47046 * 299.99875 * 5 4 2 31 31 H 1.08999 * 109.46994 * 59.99701 * 5 4 2 32 32 H 0.97002 * 119.99750 * 179.97438 * 9 8 6 33 33 H 1.00897 * 111.00163 * 38.95112 * 14 2 1 34 34 H 1.09002 * 109.47513 * 60.00297 * 15 14 2 35 35 H 1.09000 * 109.47428 * 299.99933 * 15 14 2 36 36 H 1.08993 * 109.47095 * 59.99597 * 16 15 14 37 37 H 1.09000 * 109.46517 * 300.00049 * 16 15 14 38 38 H 1.09005 * 109.47040 * 304.99546 * 17 16 15 39 39 H 1.09004 * 109.46875 * 75.94886 * 18 17 16 40 40 H 1.09001 * 109.47587 * 315.94407 * 18 17 16 41 41 H 1.09002 * 109.46805 * 284.00861 * 19 18 17 42 42 H 1.08998 * 109.46529 * 164.02054 * 19 18 17 43 43 H 1.09000 * 109.46982 * 7.07166 * 20 19 18 44 44 H 1.08998 * 109.46663 * 127.07371 * 20 19 18 45 45 H 1.09004 * 109.48128 * 195.94181 * 21 20 19 46 46 H 1.09007 * 109.47893 * 315.96717 * 21 20 19 47 47 H 1.08995 * 109.46855 * 44.04629 * 22 21 20 48 48 H 1.09002 * 109.46751 * 164.04146 * 22 21 20 49 49 H 1.09008 * 109.46452 * 232.94979 * 23 22 21 50 50 H 1.08999 * 109.47006 * 352.93471 * 23 22 21 51 51 H 1.09003 * 109.47370 * 75.98612 * 24 23 22 52 52 H 1.08996 * 109.47376 * 195.99183 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3135 6 6 4.0672 -1.3234 -2.5442 7 1 3.3687 -1.8039 -3.2133 8 6 5.4185 -1.3596 -2.8160 9 7 6.2689 -0.7740 -2.0015 10 14 6.0411 -2.2402 -4.3412 11 1 6.0905 -1.2862 -5.4781 12 1 7.4027 -2.7740 -4.0833 13 1 5.1253 -3.3606 -4.6745 14 7 2.0196 -0.6925 1.1996 15 6 2.0824 0.2227 2.3469 16 6 2.5960 -0.5326 3.5743 17 6 2.6608 0.4204 4.7695 18 6 1.2469 0.8750 5.1366 19 6 1.3258 2.1048 6.0432 20 6 2.3699 3.0784 5.4932 21 6 3.5518 3.1595 6.4614 22 6 4.4135 1.9031 6.3193 23 6 3.7199 0.7281 7.0112 24 6 3.2907 -0.3005 5.9631 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 3.8533 0.4368 -1.3572 31 1 3.9994 -1.0729 -0.4257 32 1 7.2196 -0.7998 -2.1926 33 1 1.4495 -1.4978 1.4102 34 1 1.0870 0.6165 2.5525 35 1 2.7588 1.0463 2.1182 36 1 3.5914 -0.9261 3.3685 37 1 1.9199 -1.3564 3.8031 38 1 3.2657 1.2890 4.5092 39 1 0.7310 0.0701 5.6603 40 1 0.6991 1.1275 4.2287 41 1 1.6107 1.7968 7.0493 42 1 0.3530 2.5954 6.0754 43 1 2.7190 2.7264 4.5224 44 1 1.9226 4.0662 5.3823 45 1 4.1517 4.0397 6.2298 46 1 3.1801 3.2316 7.4836 47 1 4.5496 1.6735 5.2625 48 1 5.3854 2.0749 6.7820 49 1 4.4095 0.2629 7.7156 50 1 2.8418 1.0888 7.5469 51 1 4.1618 -0.8640 5.6289 52 1 2.5624 -0.9831 6.4009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:14 Heat of formation + Delta-G solvation = -40.335106 kcal Electronic energy + Delta-G solvation = -23105.123745 eV Core-core repulsion = 20102.799574 eV Total energy + Delta-G solvation = -3002.324171 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.80884 -37.23733 -34.60993 -33.06161 -32.92987 -31.53567 -29.46516 -28.22873 -26.10322 -25.28990 -24.69888 -22.12895 -21.72137 -21.25013 -20.63938 -19.72210 -18.98570 -16.08535 -15.94079 -15.62510 -15.23372 -14.72272 -14.38722 -14.30188 -14.21281 -13.80969 -13.37953 -13.33991 -13.16058 -12.67751 -12.58306 -12.31981 -12.00267 -11.90197 -11.76527 -11.42487 -11.38705 -11.18732 -11.12145 -10.96166 -10.86380 -10.81715 -10.66147 -10.55677 -10.41950 -10.37928 -10.04319 -9.81730 -9.74146 -9.57682 -9.15077 -8.84861 -8.19293 -7.75822 -5.84672 -3.85589 3.39450 3.45366 3.49054 4.44867 4.47019 4.57253 4.67731 4.76410 4.93400 4.96538 5.08238 5.09373 5.11824 5.15418 5.36193 5.42170 5.50684 5.53287 5.54407 5.62073 5.66362 5.70811 5.73092 5.76296 5.80873 5.84025 5.89238 5.97687 6.00168 6.03507 6.05677 6.12383 6.15883 6.20745 6.26392 6.29812 6.34212 6.39393 6.45946 6.55396 6.59340 6.74836 6.95127 7.37249 7.61467 7.88939 7.91798 8.13118 8.28634 8.62216 9.23607 9.76713 11.26414 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.003269 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.331644 B = 8562.840431 C = 9372.401624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.672 5.672 15 C 0.061 3.939 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.113 4.113 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.006 0.994 31 H 0.033 0.967 32 H 0.257 0.743 33 H 0.332 0.668 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.062 0.938 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 5.767 19.556 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.088 0.912 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.302 5.302 15 C -0.069 4.069 16 C -0.151 4.151 17 C -0.123 4.123 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.167 4.167 21 C -0.155 4.155 22 C -0.168 4.168 23 C -0.163 4.163 24 C -0.150 4.150 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.150 0.850 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.190 5.878 19.413 22.268 hybrid contribution -0.567 -0.382 -0.658 0.950 sum -9.758 5.496 18.755 21.844 Atomic orbital electron populations 1.22533 0.98792 1.01417 1.01120 1.21722 0.90774 0.98303 0.91781 0.91196 1.21623 1.00586 0.98319 0.93075 1.18992 0.88341 0.96426 0.96985 1.21365 0.91844 1.33977 1.08427 0.93151 1.24997 0.97140 0.95828 0.96485 1.69980 1.02120 1.44493 1.36881 0.86688 0.78120 0.79998 0.83716 1.20872 1.21339 1.20024 1.60504 1.57478 1.09078 1.03150 1.22022 0.98536 0.95891 0.90413 1.21621 1.02373 0.97815 0.93312 1.21679 0.96672 0.99409 0.94531 1.21748 0.96916 0.97244 0.99456 1.21848 0.98483 0.96069 0.99945 1.21835 0.95963 0.98971 0.99936 1.21694 0.96842 0.97712 0.99265 1.21842 0.98229 0.94707 1.02005 1.21844 1.00252 0.96222 0.98007 1.21660 1.00357 0.97485 0.95539 0.92872 0.93839 0.92376 0.93564 0.93675 0.97567 0.94900 0.93291 0.85008 0.95951 0.91419 0.90823 0.92671 0.88746 0.92446 0.91834 0.91158 0.92811 0.90554 0.92648 0.92414 0.92216 0.90473 0.92562 0.92687 0.91204 0.91926 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 9.16 37.16 0.34 -2.17 16 2 C 0.08 1.45 2.59 -67.71 -0.18 1.28 16 3 H 0.07 1.27 7.80 -51.93 -0.40 0.87 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 10 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.67 -11.10 5.70 -106.72 -0.61 -11.71 16 15 C 0.06 0.84 5.27 -3.82 -0.02 0.82 16 16 C -0.11 -1.39 4.91 -26.73 -0.13 -1.52 16 17 C -0.10 -1.07 1.59 -90.62 -0.14 -1.21 16 18 C -0.12 -1.08 5.02 -26.74 -0.13 -1.22 16 19 C -0.13 -1.07 5.48 -26.74 -0.15 -1.21 16 20 C -0.13 -1.14 5.47 -26.74 -0.15 -1.29 16 21 C -0.12 -0.98 5.59 -26.72 -0.15 -1.13 16 22 C -0.13 -1.17 5.47 -26.73 -0.15 -1.31 16 23 C -0.13 -1.08 5.48 -26.75 -0.15 -1.23 16 24 C -0.11 -1.07 5.07 -26.73 -0.14 -1.21 16 25 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 26 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.33 5.02 8.47 -39.29 -0.33 4.69 16 34 H 0.02 0.29 5.58 -51.93 -0.29 0.00 16 35 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 36 H 0.07 1.04 8.06 -51.93 -0.42 0.63 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.02 2.83 -51.93 -0.15 0.87 16 39 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 40 H 0.06 0.64 6.00 -51.93 -0.31 0.32 16 41 H 0.07 0.57 4.69 -51.93 -0.24 0.32 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.76 5.47 -51.93 -0.28 0.47 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.46 7.47 -51.92 -0.39 0.07 16 47 H 0.08 0.78 5.47 -51.93 -0.28 0.50 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 50 H 0.07 0.57 4.69 -51.93 -0.24 0.32 16 51 H 0.06 0.64 7.98 -51.93 -0.41 0.23 16 52 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -30.48 374.23 -11.04 -41.52 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -9.97 Total: 1.26 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -1.81 Total: -26.94 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.13 Total: -38.78 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.48 -11.04 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.184 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds