Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47149 * 2 1 4 4 C 1.52995 * 109.47262 * 239.99455 * 2 1 3 5 5 C 1.53001 * 109.47084 * 175.00407 * 4 2 1 6 6 C 1.50703 * 109.47008 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99786 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99761 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00030 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99652 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46979 * 90.00090 * 10 8 6 12 12 H 1.48501 * 109.46826 * 210.00044 * 10 8 6 13 13 H 1.48496 * 109.47445 * 330.00135 * 10 8 6 14 14 N 1.46906 * 109.46679 * 119.99592 * 2 1 3 15 15 C 1.46896 * 110.99819 * 274.99963 * 14 2 1 16 16 C 1.53004 * 109.47196 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47181 * 180.02562 * 16 15 14 18 18 C 1.52989 * 109.47758 * 65.00268 * 17 16 15 19 19 C 1.52993 * 109.47372 * 195.94198 * 18 17 16 20 20 C 1.52987 * 109.49269 * 44.01535 * 19 18 17 21 21 C 1.53000 * 109.47764 * 247.07222 * 20 19 18 22 22 C 1.53013 * 109.43358 * 75.95147 * 21 20 19 23 23 C 1.52982 * 109.47549 * 284.04254 * 22 21 20 24 24 C 1.52988 * 109.49823 * 112.94076 * 23 22 21 25 25 H 1.08994 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47341 * 300.00744 * 1 2 3 27 27 H 1.09003 * 109.46825 * 60.00242 * 1 2 3 28 28 H 1.09001 * 109.47077 * 295.00263 * 4 2 1 29 29 H 1.09001 * 109.46990 * 55.00137 * 4 2 1 30 30 H 1.09001 * 109.47046 * 299.99875 * 5 4 2 31 31 H 1.08999 * 109.46994 * 59.99701 * 5 4 2 32 32 H 0.97002 * 119.99750 * 179.97438 * 9 8 6 33 33 H 1.00897 * 111.00163 * 38.95112 * 14 2 1 34 34 H 1.09002 * 109.47513 * 60.00297 * 15 14 2 35 35 H 1.09000 * 109.47428 * 299.99933 * 15 14 2 36 36 H 1.08993 * 109.47095 * 59.99597 * 16 15 14 37 37 H 1.09000 * 109.46517 * 300.00049 * 16 15 14 38 38 H 1.09005 * 109.47040 * 304.99546 * 17 16 15 39 39 H 1.09004 * 109.46875 * 75.94886 * 18 17 16 40 40 H 1.09001 * 109.47587 * 315.94407 * 18 17 16 41 41 H 1.09002 * 109.46805 * 284.00861 * 19 18 17 42 42 H 1.08998 * 109.46529 * 164.02054 * 19 18 17 43 43 H 1.09000 * 109.46982 * 7.07166 * 20 19 18 44 44 H 1.08998 * 109.46663 * 127.07371 * 20 19 18 45 45 H 1.09004 * 109.48128 * 195.94181 * 21 20 19 46 46 H 1.09007 * 109.47893 * 315.96717 * 21 20 19 47 47 H 1.08995 * 109.46855 * 44.04629 * 22 21 20 48 48 H 1.09002 * 109.46751 * 164.04146 * 22 21 20 49 49 H 1.09008 * 109.46452 * 232.94979 * 23 22 21 50 50 H 1.08999 * 109.47006 * 352.93471 * 23 22 21 51 51 H 1.09003 * 109.47370 * 75.98612 * 24 23 22 52 52 H 1.08996 * 109.47376 * 195.99183 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3135 6 6 4.0672 -1.3234 -2.5442 7 1 3.3687 -1.8039 -3.2133 8 6 5.4185 -1.3596 -2.8160 9 7 6.2689 -0.7740 -2.0015 10 14 6.0411 -2.2402 -4.3412 11 1 6.0905 -1.2862 -5.4781 12 1 7.4027 -2.7740 -4.0833 13 1 5.1253 -3.3606 -4.6745 14 7 2.0196 -0.6925 1.1996 15 6 2.0824 0.2227 2.3469 16 6 2.5960 -0.5326 3.5743 17 6 2.6608 0.4204 4.7695 18 6 1.2469 0.8750 5.1366 19 6 1.3258 2.1048 6.0432 20 6 2.3699 3.0784 5.4932 21 6 3.5518 3.1595 6.4614 22 6 4.4135 1.9031 6.3193 23 6 3.7199 0.7281 7.0112 24 6 3.2907 -0.3005 5.9631 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7716 -1.2054 29 1 1.6055 -0.2619 -2.1369 30 1 3.8533 0.4368 -1.3572 31 1 3.9994 -1.0729 -0.4257 32 1 7.2196 -0.7998 -2.1926 33 1 1.4495 -1.4978 1.4102 34 1 1.0870 0.6165 2.5525 35 1 2.7588 1.0463 2.1182 36 1 3.5914 -0.9261 3.3685 37 1 1.9199 -1.3564 3.8031 38 1 3.2657 1.2890 4.5092 39 1 0.7310 0.0701 5.6603 40 1 0.6991 1.1275 4.2287 41 1 1.6107 1.7968 7.0493 42 1 0.3530 2.5954 6.0754 43 1 2.7190 2.7264 4.5224 44 1 1.9226 4.0662 5.3823 45 1 4.1517 4.0397 6.2298 46 1 3.1801 3.2316 7.4836 47 1 4.5496 1.6735 5.2625 48 1 5.3854 2.0749 6.7820 49 1 4.4095 0.2629 7.7156 50 1 2.8418 1.0888 7.5469 51 1 4.1618 -0.8640 5.6289 52 1 2.5624 -0.9831 6.4009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = -55.893890 kcal Electronic energy + Delta-G solvation = -23105.798425 eV Core-core repulsion = 20102.799574 eV Total energy + Delta-G solvation = -3002.998851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60122 -38.58745 -35.83125 -34.91036 -33.67396 -32.96396 -31.08168 -29.32309 -27.04874 -26.82496 -25.90895 -23.32726 -22.83249 -22.59530 -21.46356 -21.25212 -19.80945 -18.36023 -16.90718 -16.56719 -16.49546 -16.23241 -16.00492 -15.15818 -14.98341 -14.90676 -14.57064 -14.41835 -14.08641 -13.99076 -13.95577 -13.76026 -13.39126 -13.14719 -12.88667 -12.82151 -12.71633 -12.53971 -12.31146 -12.15480 -12.04658 -11.89965 -11.81179 -11.60243 -11.53276 -11.49749 -11.36605 -11.21825 -11.11605 -10.91300 -10.63866 -10.48736 -10.45727 -9.05626 -8.13456 -6.24298 1.39508 1.41625 1.52571 2.43848 3.18489 3.30343 3.72410 3.89802 3.94429 4.05065 4.15747 4.17991 4.27216 4.31700 4.32778 4.36445 4.40789 4.44390 4.50764 4.64228 4.70229 4.77725 4.81168 4.86188 4.92057 4.96739 5.01494 5.07054 5.07824 5.10117 5.17592 5.19194 5.21440 5.23536 5.29095 5.30348 5.35050 5.37291 5.44880 5.48851 5.51761 5.58593 5.59237 5.73493 5.76969 5.89237 6.03076 6.32475 6.35083 6.69354 6.95584 7.43818 8.97937 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.003269 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.331644 B = 8562.840431 C = 9372.401624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.055 0.945 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.543 4.543 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.695 5.695 15 C 0.068 3.932 16 C -0.106 4.106 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.111 4.111 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.048 0.952 30 H -0.026 1.026 31 H 0.003 0.997 32 H 0.261 0.739 33 H 0.342 0.658 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.081 0.919 51 H 0.048 0.952 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 5.416 20.070 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 H 0.073 0.927 4 C -0.126 4.126 5 C 0.002 3.998 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.326 5.326 15 C -0.061 4.061 16 C -0.144 4.144 17 C -0.118 4.118 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.168 4.168 21 C -0.152 4.152 22 C -0.169 4.169 23 C -0.159 4.159 24 C -0.149 4.149 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.067 0.933 30 H -0.008 1.008 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.160 0.840 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.099 0.901 51 H 0.067 0.933 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.806 5.527 19.932 23.337 hybrid contribution -0.019 -0.259 -0.812 0.852 sum -10.825 5.268 19.120 22.594 Atomic orbital electron populations 1.22371 0.95371 1.02462 1.02370 1.21504 0.93352 0.96736 0.90424 0.92665 1.21456 0.96483 0.99063 0.95579 1.18819 0.92281 0.93697 0.95045 1.21819 0.92557 1.34417 1.09357 0.92622 1.25979 0.97385 0.96526 1.00070 1.70129 1.02556 1.45697 1.39007 0.85492 0.77585 0.78964 0.79252 1.19785 1.20760 1.18787 1.60392 1.58322 1.10104 1.03827 1.21968 0.99117 0.95011 0.90008 1.21549 1.00861 0.98404 0.93578 1.21621 0.97643 0.98638 0.93885 1.21699 0.95768 0.97940 0.99516 1.21823 0.98713 0.95448 0.99942 1.21825 0.96326 0.99319 0.99308 1.21678 0.96537 0.97237 0.99767 1.21837 0.98709 0.95406 1.00959 1.21819 1.00730 0.95655 0.97657 1.21636 0.99985 0.97757 0.95504 0.91900 0.91963 0.91752 0.93420 0.93289 1.00755 0.97889 0.93040 0.83970 0.93890 0.93632 0.93526 0.91670 0.89522 0.91645 0.92423 0.90374 0.91993 0.92146 0.92215 0.92462 0.91017 0.92243 0.92354 0.92150 0.90118 0.93289 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 9.16 71.98 0.66 -3.65 16 2 C 0.09 3.11 2.59 44.91 0.12 3.22 16 3 H 0.05 2.06 7.80 -2.39 -0.02 2.04 16 4 C -0.09 -3.78 4.83 30.59 0.15 -3.63 16 5 C 0.04 2.17 4.86 29.85 0.15 2.31 16 6 C -0.54 -32.58 9.11 25.60 0.23 -32.35 16 7 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 8 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 9 N -0.93 -59.47 13.29 21.45 0.28 -59.18 16 10 Si 0.96 46.04 29.54 68.60 2.03 48.06 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 14 N -0.70 -23.24 5.70 -491.56 -2.80 -26.05 16 15 C 0.07 1.91 5.27 86.31 0.45 2.36 16 16 C -0.11 -2.65 4.91 30.59 0.15 -2.50 16 17 C -0.10 -2.01 1.59 -10.79 -0.02 -2.03 16 18 C -0.11 -1.90 5.02 30.59 0.15 -1.75 16 19 C -0.12 -1.82 5.48 30.59 0.17 -1.65 16 20 C -0.13 -2.17 5.47 30.59 0.17 -2.00 16 21 C -0.11 -1.78 5.59 30.60 0.17 -1.61 16 22 C -0.13 -2.31 5.47 30.59 0.17 -2.14 16 23 C -0.12 -1.93 5.48 30.58 0.17 -1.77 16 24 C -0.11 -2.05 5.07 30.59 0.15 -1.90 16 25 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 26 H 0.06 1.39 7.45 -2.39 -0.02 1.38 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 31 H 0.00 0.16 7.75 -2.39 -0.02 0.15 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.34 10.13 8.47 -89.70 -0.76 9.37 16 34 H 0.04 1.05 5.58 -2.39 -0.01 1.03 16 35 H 0.05 1.47 8.06 -2.39 -0.02 1.45 16 36 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.93 2.83 -2.38 -0.01 1.93 16 39 H 0.06 1.03 7.82 -2.38 -0.02 1.01 16 40 H 0.06 1.05 6.00 -2.39 -0.01 1.04 16 41 H 0.08 1.05 4.69 -2.39 -0.01 1.04 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 1.21 5.47 -2.39 -0.01 1.19 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.07 0.96 7.47 -2.38 -0.02 0.94 16 47 H 0.06 1.26 5.47 -2.39 -0.01 1.25 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.08 1.12 4.69 -2.39 -0.01 1.11 16 51 H 0.05 1.03 7.98 -2.39 -0.02 1.01 16 52 H 0.07 1.12 7.82 -2.39 -0.02 1.10 16 Total: -1.00 -66.83 374.23 3.11 -63.72 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.10 Total: 22.21 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 3.50 Total: -48.76 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.52 Total: -85.23 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -66.83 3.11 -63.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.822 kcal (2) G-P(sol) polarization free energy of solvation -66.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds