Wall clock time and date at job start Tue Mar 31 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 H 1.09002 * 109.47045 * 55.00256 * 3 2 1 5 5 C 1.52997 * 109.47232 * 295.00198 * 3 2 1 6 6 C 1.53002 * 109.47092 * 175.00123 * 3 2 1 7 7 C 1.52997 * 109.47143 * 300.00129 * 6 3 2 8 8 C 1.53002 * 109.46817 * 180.02562 * 7 6 3 9 9 C 1.53000 * 109.47233 * 60.00194 * 8 7 6 10 10 N 1.46896 * 109.47053 * 180.02562 * 9 8 7 11 11 C 1.46901 * 110.99913 * 205.00062 * 10 9 8 12 12 H 1.08997 * 109.47020 * 324.99207 * 11 10 9 13 13 C 1.52995 * 109.47559 * 84.99842 * 11 10 9 14 14 C 1.53005 * 109.47226 * 204.99952 * 11 10 9 15 15 C 1.53004 * 109.47007 * 64.99394 * 14 11 10 16 16 C 1.50699 * 109.46781 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00130 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00024 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99624 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00152 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46966 * 59.99755 * 20 18 16 22 22 H 1.48499 * 109.47017 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46782 * 299.99673 * 20 18 16 24 24 C 1.52997 * 109.47060 * 299.99657 * 9 8 7 25 25 C 1.52999 * 109.47317 * 59.99960 * 24 9 8 26 26 H 1.09000 * 109.47102 * 299.99700 * 1 2 3 27 27 H 1.09001 * 109.47254 * 59.99866 * 1 2 3 28 28 H 1.09004 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47090 * 239.99743 * 2 1 3 30 30 H 1.09001 * 109.47254 * 120.00134 * 2 1 3 31 31 H 1.09002 * 109.47153 * 299.99992 * 5 3 2 32 32 H 1.09001 * 109.46832 * 59.99801 * 5 3 2 33 33 H 1.09000 * 109.47611 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47067 * 60.00147 * 6 3 2 35 35 H 1.08993 * 109.47194 * 59.99677 * 7 6 3 36 36 H 1.09002 * 109.46695 * 299.99691 * 7 6 3 37 37 H 1.08992 * 109.47063 * 299.99823 * 8 7 6 38 38 H 1.09004 * 109.46733 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47398 * 59.99826 * 9 8 7 40 40 H 1.00902 * 110.99924 * 328.95052 * 10 9 8 41 41 H 1.09001 * 109.47409 * 180.02562 * 13 11 10 42 42 H 1.09007 * 109.46927 * 299.99830 * 13 11 10 43 43 H 1.08997 * 109.47472 * 59.99642 * 13 11 10 44 44 H 1.08992 * 109.47627 * 184.99914 * 14 11 10 45 45 H 1.09003 * 109.46914 * 304.99976 * 14 11 10 46 46 H 1.09003 * 109.47182 * 300.00204 * 15 14 11 47 47 H 1.08998 * 109.47279 * 60.00488 * 15 14 11 48 48 H 0.97004 * 119.99645 * 180.02562 * 19 18 16 49 49 H 1.08996 * 109.47853 * 180.02562 * 24 9 8 50 50 H 1.09002 * 109.47153 * 300.00319 * 24 9 8 51 51 H 1.09000 * 109.47486 * 180.02562 * 25 24 9 52 52 H 1.09002 * 109.46716 * 60.00091 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 6 3.9696 0.7602 1.4330 8 6 5.4945 0.7626 1.5589 9 6 6.0039 2.2052 1.5592 10 7 7.4680 2.2075 1.6795 11 6 7.9462 3.4673 2.2643 12 1 7.3151 4.2884 1.9243 13 6 7.8866 3.3763 3.7904 14 6 9.3900 3.7182 1.8245 15 6 9.4318 3.9332 0.3102 16 6 10.8539 4.1796 -0.1231 17 1 11.6485 4.1830 0.6084 18 6 11.1407 4.4018 -1.4534 19 7 10.1731 4.3981 -2.3440 20 14 12.9034 4.7080 -1.9904 21 1 13.7404 3.5342 -1.6342 22 1 12.9439 4.9165 -3.4601 23 1 13.4272 5.9161 -1.3039 24 6 5.5992 2.8893 0.2519 25 6 4.0744 2.8870 0.1259 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0698 1.5875 -2.1491 32 1 0.5489 2.1252 -1.3968 33 1 1.9982 3.1543 -1.3072 34 1 3.9995 0.9052 -0.7162 35 1 3.6063 -0.2674 1.4330 36 1 3.5351 1.2993 2.2748 37 1 5.9294 0.2238 0.7172 38 1 5.7828 0.2756 2.4905 39 1 5.5690 2.7440 2.4011 40 1 7.7879 1.4153 2.2163 41 1 8.2410 4.3113 4.2243 42 1 6.8579 3.1977 4.1038 43 1 8.5177 2.5553 4.1304 44 1 9.7745 4.6050 2.3281 45 1 10.0044 2.8567 2.0862 46 1 9.0473 3.0462 -0.1935 47 1 8.8174 4.7946 0.0484 48 1 10.3749 4.5541 -3.2800 49 1 5.9625 3.9170 0.2518 50 1 6.0341 2.3505 -0.5899 51 1 3.7860 3.3739 -0.8057 52 1 3.6395 3.4257 0.9677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:12 Heat of formation + Delta-G solvation = -59.616871 kcal Electronic energy + Delta-G solvation = -23185.990672 eV Core-core repulsion = 20182.830381 eV Total energy + Delta-G solvation = -3003.160291 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.48241 -37.26744 -35.10744 -33.00249 -31.58395 -30.74500 -29.72823 -28.83286 -27.01010 -25.00800 -24.44935 -22.47583 -21.70283 -21.09618 -19.83073 -19.63826 -19.42639 -16.06311 -15.91879 -15.31228 -14.95455 -14.60408 -14.35938 -14.28509 -13.96892 -13.55031 -13.34468 -13.19931 -12.85203 -12.64793 -12.42926 -12.29747 -12.12948 -12.11123 -11.77277 -11.55300 -11.43072 -11.19766 -11.10419 -11.09192 -10.89708 -10.79566 -10.74213 -10.57892 -10.43300 -10.29160 -10.13448 -9.89002 -9.70225 -9.50249 -9.14368 -8.84765 -8.18326 -7.75893 -5.84059 -3.84854 3.41040 3.45033 3.47718 4.42308 4.57570 4.60920 4.66463 4.79028 4.90167 5.03202 5.20519 5.31747 5.35209 5.41687 5.42751 5.45436 5.51160 5.51708 5.58182 5.62996 5.66289 5.71068 5.71157 5.77023 5.81225 5.83386 5.86889 5.92783 5.98161 6.06749 6.12903 6.15269 6.22066 6.27833 6.31436 6.33469 6.44937 6.45873 6.52926 6.61010 6.77348 6.82524 6.96413 7.38818 7.66316 7.89454 7.94962 8.14119 8.29831 8.63012 9.24131 9.77232 11.26864 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003401 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.636129 B = 8229.875697 C = 9183.254801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.087 4.087 4 H 0.066 0.934 5 C -0.151 4.151 6 C -0.082 4.082 7 C -0.110 4.110 8 C -0.120 4.120 9 C 0.092 3.908 10 N -0.669 5.669 11 C 0.085 3.915 12 H 0.070 0.930 13 C -0.180 4.180 14 C -0.098 4.098 15 C 0.032 3.968 16 C -0.518 4.518 17 H 0.049 0.951 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.886 3.114 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.279 1.279 24 C -0.107 4.107 25 C -0.113 4.113 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.333 0.667 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.045 0.955 46 H 0.033 0.967 47 H 0.006 0.994 48 H 0.258 0.742 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.064 0.936 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.744 -7.731 7.876 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.105 4.105 4 H 0.084 0.916 5 C -0.208 4.208 6 C -0.101 4.101 7 C -0.148 4.148 8 C -0.158 4.158 9 C -0.017 4.017 10 N -0.299 5.299 11 C -0.025 4.025 12 H 0.089 0.911 13 C -0.239 4.239 14 C -0.136 4.136 15 C -0.005 4.005 16 C -0.557 4.557 17 H 0.067 0.933 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.205 1.205 24 C -0.145 4.145 25 C -0.151 4.151 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.151 0.849 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.024 0.976 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.083 0.917 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.665 -7.501 7.032 21.310 hybrid contribution 0.779 0.123 0.601 0.991 sum -17.887 -7.378 7.632 20.799 Atomic orbital electron populations 1.21829 0.96303 1.01221 1.01729 1.21655 0.95460 0.96822 1.02091 1.21191 0.95379 0.95748 0.98179 0.91560 1.21940 1.00745 1.00881 0.97265 1.21213 0.94097 0.96740 0.98007 1.21586 0.95470 1.00256 0.97462 1.21710 0.95524 0.96747 1.01834 1.21461 0.88219 0.95135 0.96916 1.60542 1.08821 1.04173 1.56379 1.21743 0.98894 0.91810 0.90064 0.91133 1.22539 1.00378 1.01999 0.98961 1.21627 0.91949 0.99205 1.00863 1.18967 0.95658 0.97267 0.88603 1.21333 0.93990 1.47822 0.92546 0.93255 1.24991 0.96610 0.95871 0.96939 1.69970 1.31355 1.50456 1.01628 0.86760 0.85832 0.78624 0.77333 1.20409 1.21425 1.20464 1.21518 0.93771 1.01337 0.97871 1.21643 0.96218 0.95776 1.01482 0.92990 0.92604 0.93142 0.92093 0.91736 0.92717 0.92939 0.92276 0.91053 0.91923 0.92470 0.91023 0.92673 0.94816 0.84890 0.92426 0.93861 0.92889 0.93752 0.93599 0.94878 0.97610 0.93257 0.91794 0.90974 0.91721 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -1.01 5.19 -26.73 -0.14 -1.15 16 3 C -0.09 -0.78 1.97 -90.62 -0.18 -0.96 16 4 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.15 -1.36 8.59 37.16 0.32 -1.04 16 6 C -0.08 -0.87 1.78 -90.62 -0.16 -1.03 16 7 C -0.11 -1.12 4.86 -26.73 -0.13 -1.25 16 8 C -0.12 -1.43 5.19 -26.73 -0.14 -1.56 16 9 C 0.09 1.30 2.31 -67.72 -0.16 1.14 16 10 N -0.67 -10.98 5.51 -99.74 -0.55 -11.53 16 11 C 0.08 1.46 2.40 -67.71 -0.16 1.30 16 12 H 0.07 1.29 7.11 -51.93 -0.37 0.92 16 13 C -0.18 -2.53 9.15 37.16 0.34 -2.19 16 14 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 15 C 0.03 0.86 4.86 -27.88 -0.14 0.72 16 16 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 20 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.11 -1.63 5.41 -26.73 -0.14 -1.77 16 25 C -0.11 -1.37 4.85 -26.73 -0.13 -1.50 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 6.17 -51.93 -0.32 0.20 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 33 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.03 0.47 7.11 -51.93 -0.37 0.10 16 40 H 0.33 5.01 8.09 -39.29 -0.32 4.69 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 43 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.03 0.95 7.75 -51.93 -0.40 0.54 16 47 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.06 1.11 7.43 -51.93 -0.39 0.72 16 50 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 51 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 52 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -30.19 384.96 -10.56 -40.76 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -10.53 Total: 0.81 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -1.00 Total: -26.22 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.19 Total: -38.46 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.19 -10.56 -40.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.860 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds