Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 H 1.09002 * 109.47045 * 55.00256 * 3 2 1 5 5 C 1.52997 * 109.47232 * 295.00198 * 3 2 1 6 6 C 1.53002 * 109.47092 * 175.00123 * 3 2 1 7 7 C 1.52997 * 109.47143 * 300.00129 * 6 3 2 8 8 C 1.53002 * 109.46817 * 180.02562 * 7 6 3 9 9 C 1.53000 * 109.47233 * 60.00194 * 8 7 6 10 10 N 1.46896 * 109.47053 * 180.02562 * 9 8 7 11 11 C 1.46901 * 110.99913 * 205.00062 * 10 9 8 12 12 H 1.08997 * 109.47020 * 324.99207 * 11 10 9 13 13 C 1.52995 * 109.47559 * 84.99842 * 11 10 9 14 14 C 1.53005 * 109.47226 * 204.99952 * 11 10 9 15 15 C 1.53004 * 109.47007 * 64.99394 * 14 11 10 16 16 C 1.50699 * 109.46781 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00130 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00024 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99624 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00152 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46966 * 59.99755 * 20 18 16 22 22 H 1.48499 * 109.47017 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46782 * 299.99673 * 20 18 16 24 24 C 1.52997 * 109.47060 * 299.99657 * 9 8 7 25 25 C 1.52999 * 109.47317 * 59.99960 * 24 9 8 26 26 H 1.09000 * 109.47102 * 299.99700 * 1 2 3 27 27 H 1.09001 * 109.47254 * 59.99866 * 1 2 3 28 28 H 1.09004 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47090 * 239.99743 * 2 1 3 30 30 H 1.09001 * 109.47254 * 120.00134 * 2 1 3 31 31 H 1.09002 * 109.47153 * 299.99992 * 5 3 2 32 32 H 1.09001 * 109.46832 * 59.99801 * 5 3 2 33 33 H 1.09000 * 109.47611 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47067 * 60.00147 * 6 3 2 35 35 H 1.08993 * 109.47194 * 59.99677 * 7 6 3 36 36 H 1.09002 * 109.46695 * 299.99691 * 7 6 3 37 37 H 1.08992 * 109.47063 * 299.99823 * 8 7 6 38 38 H 1.09004 * 109.46733 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47398 * 59.99826 * 9 8 7 40 40 H 1.00902 * 110.99924 * 328.95052 * 10 9 8 41 41 H 1.09001 * 109.47409 * 180.02562 * 13 11 10 42 42 H 1.09007 * 109.46927 * 299.99830 * 13 11 10 43 43 H 1.08997 * 109.47472 * 59.99642 * 13 11 10 44 44 H 1.08992 * 109.47627 * 184.99914 * 14 11 10 45 45 H 1.09003 * 109.46914 * 304.99976 * 14 11 10 46 46 H 1.09003 * 109.47182 * 300.00204 * 15 14 11 47 47 H 1.08998 * 109.47279 * 60.00488 * 15 14 11 48 48 H 0.97004 * 119.99645 * 180.02562 * 19 18 16 49 49 H 1.08996 * 109.47853 * 180.02562 * 24 9 8 50 50 H 1.09002 * 109.47153 * 300.00319 * 24 9 8 51 51 H 1.09000 * 109.47486 * 180.02562 * 25 24 9 52 52 H 1.09002 * 109.46716 * 60.00091 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 6 3.9696 0.7602 1.4330 8 6 5.4945 0.7626 1.5589 9 6 6.0039 2.2052 1.5592 10 7 7.4680 2.2075 1.6795 11 6 7.9462 3.4673 2.2643 12 1 7.3151 4.2884 1.9243 13 6 7.8866 3.3763 3.7904 14 6 9.3900 3.7182 1.8245 15 6 9.4318 3.9332 0.3102 16 6 10.8539 4.1796 -0.1231 17 1 11.6485 4.1830 0.6084 18 6 11.1407 4.4018 -1.4534 19 7 10.1731 4.3981 -2.3440 20 14 12.9034 4.7080 -1.9904 21 1 13.7404 3.5342 -1.6342 22 1 12.9439 4.9165 -3.4601 23 1 13.4272 5.9161 -1.3039 24 6 5.5992 2.8893 0.2519 25 6 4.0744 2.8870 0.1259 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0698 1.5875 -2.1491 32 1 0.5489 2.1252 -1.3968 33 1 1.9982 3.1543 -1.3072 34 1 3.9995 0.9052 -0.7162 35 1 3.6063 -0.2674 1.4330 36 1 3.5351 1.2993 2.2748 37 1 5.9294 0.2238 0.7172 38 1 5.7828 0.2756 2.4905 39 1 5.5690 2.7440 2.4011 40 1 7.7879 1.4153 2.2163 41 1 8.2410 4.3113 4.2243 42 1 6.8579 3.1977 4.1038 43 1 8.5177 2.5553 4.1304 44 1 9.7745 4.6050 2.3281 45 1 10.0044 2.8567 2.0862 46 1 9.0473 3.0462 -0.1935 47 1 8.8174 4.7946 0.0484 48 1 10.3749 4.5541 -3.2800 49 1 5.9625 3.9170 0.2518 50 1 6.0341 2.3505 -0.5899 51 1 3.7860 3.3739 -0.8057 52 1 3.6395 3.4257 0.9677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = -74.961715 kcal Electronic energy + Delta-G solvation = -23186.656074 eV Core-core repulsion = 20182.830381 eV Total energy + Delta-G solvation = -3003.825693 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.49626 -38.44859 -36.29160 -34.99961 -32.90624 -31.84017 -31.12053 -29.99352 -28.02399 -26.96640 -25.30040 -23.64924 -23.02951 -22.44763 -21.15510 -20.63203 -20.54838 -18.35153 -17.07078 -16.51563 -16.30002 -15.83875 -15.77786 -15.19648 -14.99677 -14.72718 -14.57028 -14.32280 -14.04928 -13.99801 -13.86381 -13.44885 -13.28543 -13.16266 -12.97927 -12.86226 -12.78063 -12.54476 -12.36583 -12.34783 -12.15663 -12.08628 -11.95645 -11.70809 -11.61323 -11.46781 -11.35451 -11.26207 -11.20989 -10.97385 -10.80399 -10.61609 -10.47564 -9.06596 -8.13130 -6.23959 1.38717 1.42542 1.50150 2.43525 3.18489 3.26609 3.73389 3.79490 3.90564 4.04988 4.10316 4.19511 4.30154 4.39249 4.42058 4.45585 4.49209 4.59063 4.61828 4.65951 4.67918 4.74150 4.77780 4.79671 4.83742 4.94398 5.00909 5.03600 5.06014 5.09627 5.12091 5.18548 5.23134 5.26251 5.28613 5.28962 5.36311 5.37463 5.38597 5.45626 5.49089 5.55224 5.59506 5.64928 5.70706 5.90648 6.04181 6.34877 6.38767 6.73391 6.95895 7.43892 8.97816 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003401 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.636129 B = 8229.875697 C = 9183.254801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.080 4.080 4 H 0.072 0.928 5 C -0.152 4.152 6 C -0.078 4.078 7 C -0.104 4.104 8 C -0.114 4.114 9 C 0.098 3.902 10 N -0.691 5.691 11 C 0.092 3.908 12 H 0.053 0.947 13 C -0.167 4.167 14 C -0.089 4.089 15 C 0.044 3.956 16 C -0.545 4.545 17 H 0.055 0.945 18 C -0.002 4.002 19 N -0.932 5.932 20 Si 0.961 3.039 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.267 1.267 24 C -0.104 4.104 25 C -0.105 4.105 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.342 0.658 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.003 0.997 47 H -0.028 1.028 48 H 0.261 0.739 49 H 0.031 0.969 50 H 0.039 0.961 51 H 0.060 0.940 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.234 -8.591 9.657 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.099 4.099 4 H 0.091 0.909 5 C -0.209 4.209 6 C -0.097 4.097 7 C -0.141 4.141 8 C -0.152 4.152 9 C -0.012 4.012 10 N -0.323 5.323 11 C -0.018 4.018 12 H 0.072 0.928 13 C -0.226 4.226 14 C -0.127 4.127 15 C 0.007 3.993 16 C -0.583 4.583 17 H 0.073 0.927 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.192 1.192 24 C -0.143 4.143 25 C -0.143 4.143 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.162 0.838 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.021 0.979 47 H -0.010 1.010 48 H 0.069 0.931 49 H 0.050 0.950 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.158 -8.368 8.832 22.694 hybrid contribution 0.933 0.414 -0.022 1.021 sum -18.224 -7.954 8.810 21.749 Atomic orbital electron populations 1.21816 0.95440 1.01752 1.01934 1.21635 0.96192 0.95915 1.02102 1.21134 0.93852 0.96613 0.98281 0.90911 1.21946 1.01492 1.00330 0.97142 1.21162 0.95328 0.95156 0.98036 1.21565 0.93976 1.01368 0.97238 1.21663 0.96749 0.94714 1.02068 1.21450 0.86848 0.96807 0.96066 1.60412 1.10628 1.04132 1.57098 1.21494 0.95746 0.91836 0.92706 0.92833 1.22378 1.01923 1.02769 0.95526 1.21467 0.95107 0.99338 0.96781 1.18760 0.93933 0.94273 0.92338 1.21800 0.95175 1.48082 0.93217 0.92692 1.25973 1.01637 0.95325 0.96998 1.70127 1.33976 1.51109 1.02031 0.85565 0.79757 0.79079 0.77003 1.19242 1.20862 1.19222 1.21469 0.96077 0.98960 0.97756 1.21575 0.93619 0.97387 1.01750 0.92540 0.92648 0.92495 0.92663 0.91163 0.93427 0.91718 0.93001 0.92559 0.90209 0.91330 0.92639 0.90875 0.93748 0.83840 0.91891 0.91958 0.91827 0.93476 0.93408 0.97905 1.00955 0.93079 0.95050 0.94250 0.92178 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.67 71.98 0.70 -1.21 16 2 C -0.12 -1.76 5.19 30.59 0.16 -1.60 16 3 C -0.08 -1.33 1.97 -10.79 -0.02 -1.36 16 4 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 5 C -0.15 -2.63 8.59 71.98 0.62 -2.01 16 6 C -0.08 -1.60 1.78 -10.79 -0.02 -1.62 16 7 C -0.10 -1.89 4.86 30.59 0.15 -1.74 16 8 C -0.11 -2.57 5.19 30.60 0.16 -2.41 16 9 C 0.10 2.75 2.31 44.92 0.10 2.85 16 10 N -0.69 -23.02 5.51 -469.48 -2.59 -25.60 16 11 C 0.09 3.20 2.40 44.92 0.11 3.31 16 12 H 0.05 2.03 7.11 -2.39 -0.02 2.02 16 13 C -0.17 -4.34 9.15 71.98 0.66 -3.68 16 14 C -0.09 -3.84 4.83 30.60 0.15 -3.70 16 15 C 0.04 2.47 4.86 29.85 0.15 2.62 16 16 C -0.54 -32.73 9.11 25.60 0.23 -32.50 16 17 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 18 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 19 N -0.93 -59.50 13.29 21.45 0.28 -59.21 16 20 Si 0.96 46.19 29.54 68.60 2.03 48.21 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 C -0.10 -3.39 5.41 30.59 0.17 -3.22 16 25 C -0.11 -2.59 4.85 30.60 0.15 -2.45 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.69 6.57 -2.39 -0.02 0.68 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.95 6.17 -2.39 -0.01 0.93 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.95 6.56 -2.39 -0.02 0.94 16 33 H 0.05 0.96 6.43 -2.39 -0.02 0.94 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.24 6.32 -2.39 -0.02 1.22 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 39 H 0.04 1.18 7.11 -2.39 -0.02 1.16 16 40 H 0.34 10.06 8.09 -89.69 -0.73 9.34 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.40 7.43 -2.38 -0.02 1.39 16 43 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.00 0.15 7.75 -2.39 -0.02 0.14 16 47 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 48 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 49 H 0.03 1.18 7.43 -2.39 -0.02 1.17 16 50 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.06 1.52 6.43 -2.39 -0.02 1.50 16 52 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.45 384.96 3.75 -63.70 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.11 Total: 21.28 kcal Atomic # 6 Polarization: -52.29 SS G_CDS: 3.91 Total: -48.38 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.30 Total: -84.82 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -67.45 3.75 -63.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.258 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds