Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47449 * 2 1 4 4 C 1.53004 * 109.47192 * 119.99971 * 2 1 3 5 5 C 1.52993 * 109.47326 * 185.00206 * 4 2 1 6 6 C 1.50698 * 109.47165 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00394 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00055 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99943 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99957 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46990 * 89.99610 * 10 8 6 12 12 H 1.48497 * 109.47256 * 209.99738 * 10 8 6 13 13 H 1.48498 * 109.47102 * 330.00214 * 10 8 6 14 14 N 1.46899 * 109.47431 * 239.99559 * 2 1 3 15 15 C 1.46904 * 110.99745 * 113.44882 * 14 2 1 16 16 H 1.08995 * 109.47094 * 35.88482 * 15 14 2 17 17 C 1.53004 * 109.46672 * 155.88065 * 15 14 2 18 18 C 1.53009 * 109.46904 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47108 * 300.00442 * 18 17 15 20 20 H 1.09008 * 109.46960 * 299.99664 * 19 18 17 21 21 C 1.52996 * 109.47027 * 179.97438 * 19 18 17 22 22 C 1.53004 * 109.47159 * 59.99594 * 21 19 18 23 23 C 1.52995 * 109.47302 * 179.97438 * 21 19 18 24 24 C 1.53002 * 109.47337 * 300.00025 * 21 19 18 25 25 C 1.52997 * 109.47214 * 59.99713 * 19 18 17 26 26 C 1.52995 * 109.47428 * 275.87967 * 15 14 2 27 27 H 1.09003 * 109.47470 * 185.43523 * 1 2 3 28 28 H 1.08993 * 109.47422 * 305.44219 * 1 2 3 29 29 H 1.09001 * 109.46969 * 65.44402 * 1 2 3 30 30 H 1.09003 * 109.46609 * 304.99745 * 4 2 1 31 31 H 1.08995 * 109.46905 * 64.99768 * 4 2 1 32 32 H 1.08994 * 109.47301 * 299.99768 * 5 4 2 33 33 H 1.09004 * 109.47552 * 59.99744 * 5 4 2 34 34 H 0.96998 * 120.00033 * 180.02562 * 9 8 6 35 35 H 1.00901 * 111.00290 * 237.40101 * 14 2 1 36 36 H 1.08992 * 109.47476 * 300.00026 * 17 15 14 37 37 H 1.09002 * 109.47319 * 60.00627 * 17 15 14 38 38 H 1.09002 * 109.46550 * 60.00242 * 18 17 15 39 39 H 1.08992 * 109.46727 * 180.02562 * 18 17 15 40 40 H 1.09008 * 109.46976 * 60.00060 * 22 21 19 41 41 H 1.08994 * 109.47156 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.47327 * 300.00627 * 22 21 19 43 43 H 1.09005 * 109.46961 * 59.99953 * 23 21 19 44 44 H 1.09004 * 109.47641 * 179.97438 * 23 21 19 45 45 H 1.09001 * 109.47112 * 300.00547 * 23 21 19 46 46 H 1.08995 * 109.46751 * 59.99617 * 24 21 19 47 47 H 1.08994 * 109.47006 * 180.02562 * 24 21 19 48 48 H 1.09005 * 109.46689 * 299.99902 * 24 21 19 49 49 H 1.09001 * 109.46899 * 60.00351 * 25 19 18 50 50 H 1.09004 * 109.46796 * 180.02562 * 25 19 18 51 51 H 1.09001 * 109.47112 * 300.00618 * 26 15 14 52 52 H 1.09005 * 109.46961 * 60.00024 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5647 -0.6133 1.3138 6 6 4.0670 -1.3231 2.5446 7 1 3.3685 -1.8037 3.2137 8 6 5.4182 -1.3592 2.8165 9 7 6.2687 -0.7736 2.0020 10 14 6.0408 -2.2397 4.3418 11 1 6.3215 -3.6605 4.0132 12 1 7.2867 -1.5860 4.8168 13 1 5.0092 -2.1728 5.4077 14 7 2.0197 -0.6926 -1.1994 15 6 2.7097 0.2399 -2.1008 16 1 3.2541 0.9783 -1.5123 17 6 3.6919 -0.5351 -2.9815 18 6 4.4101 0.4359 -3.9209 19 6 3.3821 1.1448 -4.8049 20 1 2.8377 0.4060 -5.3931 21 6 4.1003 2.1163 -5.7437 22 6 5.0828 1.3418 -6.6245 23 6 3.0724 2.8247 -6.6281 24 6 4.8640 3.1532 -4.9177 25 6 2.4000 1.9197 -3.9241 26 6 1.6821 0.9492 -2.9849 27 1 -0.3634 -1.0230 0.0973 28 1 -0.3634 0.5959 0.8372 29 1 -0.3633 0.4271 -0.9347 30 1 1.6053 -0.2616 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9994 -1.0728 0.4261 33 1 3.8531 0.4370 1.3574 34 1 7.2194 -0.7993 2.1931 35 1 2.6187 -1.4657 -0.9513 36 1 4.4239 -1.0405 -2.3518 37 1 3.1474 -1.2736 -3.5701 38 1 4.9545 1.1747 -3.3326 39 1 5.1094 -0.1162 -4.5486 40 1 4.5387 0.6030 -7.2131 41 1 5.5941 2.0338 -7.2936 42 1 5.8151 0.8368 -5.9947 43 1 2.3721 3.3764 -6.0009 44 1 3.5839 3.5172 -7.2967 45 1 2.5285 2.0857 -7.2166 46 1 5.5963 2.6481 -4.2879 47 1 5.3753 3.8455 -5.5865 48 1 4.1640 3.7049 -4.2901 49 1 2.9444 2.6585 -3.3359 50 1 1.6673 2.4243 -4.5539 51 1 1.1376 0.2107 -3.5733 52 1 0.9824 1.5013 -2.3574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490094.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = -56.950718 kcal Electronic energy + Delta-G solvation = -23645.750870 eV Core-core repulsion = 20642.706192 eV Total energy + Delta-G solvation = -3003.044678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.79236 -37.42814 -35.00404 -32.93943 -30.95460 -30.75798 -29.21878 -27.42438 -27.32065 -27.00679 -24.94878 -22.33416 -22.25348 -21.23479 -19.86621 -19.36223 -18.31043 -16.32917 -15.87071 -14.98332 -14.76425 -14.67535 -14.47462 -14.09630 -13.95482 -13.78540 -13.55645 -12.74696 -12.69088 -12.51989 -12.40728 -12.25773 -12.05201 -11.87974 -11.78390 -11.61345 -11.47986 -11.28241 -11.16037 -11.08053 -10.96703 -10.87807 -10.70100 -10.55612 -10.45957 -10.19338 -10.16088 -9.81447 -9.72805 -9.59333 -9.28063 -9.04886 -8.36381 -7.84865 -6.01111 -4.03323 3.30958 3.37297 3.40848 4.45165 4.49249 4.66648 4.72733 4.76443 5.03672 5.10492 5.32383 5.34561 5.43183 5.47878 5.54455 5.55156 5.58347 5.63277 5.66914 5.72687 5.74509 5.77951 5.85175 5.88863 5.90996 5.92330 5.97183 6.04616 6.09203 6.11544 6.17973 6.25070 6.31303 6.33474 6.40070 6.42566 6.44085 6.49763 6.58019 6.58781 6.66225 6.72790 6.92178 7.11390 7.63727 7.64066 7.83174 7.96397 8.03343 8.42058 9.03459 9.60920 11.09884 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.003914 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.980607 B = 7151.473294 C = 8244.295230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.081 3.919 3 H 0.051 0.949 4 C -0.126 4.126 5 C 0.023 3.977 6 C -0.520 4.520 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.684 5.684 15 C 0.092 3.908 16 H 0.044 0.956 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.073 4.073 20 H 0.067 0.933 21 C -0.065 4.065 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.146 4.146 25 C -0.117 4.117 26 C -0.104 4.104 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.260 0.740 35 H 0.348 0.652 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.060 0.940 51 H 0.062 0.938 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 6.118 -16.711 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.029 4.029 3 H 0.069 0.931 4 C -0.165 4.165 5 C -0.014 4.014 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.316 5.316 15 C -0.018 4.018 16 H 0.062 0.938 17 C -0.158 4.158 18 C -0.151 4.151 19 C -0.091 4.091 20 H 0.085 0.915 21 C -0.065 4.065 22 C -0.201 4.201 23 C -0.199 4.199 24 C -0.204 4.204 25 C -0.154 4.154 26 C -0.142 4.142 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.168 0.832 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.705 6.191 -17.050 19.339 hybrid contribution 1.331 -0.330 1.382 1.947 sum -5.375 5.861 -15.668 17.570 Atomic orbital electron populations 1.21805 0.95984 1.01208 1.00128 1.21684 0.94420 0.96862 0.89888 0.93126 1.22079 0.99835 0.99167 0.95379 1.19099 0.88679 0.96822 0.96849 1.21256 0.91946 1.34259 1.08380 0.92760 1.25018 0.97083 0.95596 0.96673 1.69961 1.02323 1.44042 1.37091 0.86618 0.78314 0.79779 0.83446 1.20660 1.21251 1.19901 1.60655 1.43074 1.11443 1.16450 1.21529 0.92955 0.93951 0.93375 0.93817 1.21690 0.98091 0.98070 0.97993 1.21652 0.97553 0.98442 0.97473 1.21163 0.95928 0.96479 0.95570 0.91469 1.20545 0.95343 0.95463 0.95162 1.21929 0.99053 0.99814 0.99257 1.21921 0.98730 1.00075 0.99204 1.21991 1.00238 0.98390 0.99732 1.21698 0.97994 0.98134 0.97623 1.21525 0.97644 0.97784 0.97224 0.92954 0.93536 0.93332 0.92899 0.92827 0.96779 0.97058 0.93070 0.83175 0.91588 0.91770 0.91611 0.91934 0.92913 0.93125 0.92186 0.92373 0.93134 0.92916 0.92113 0.93259 0.92352 0.91901 0.92134 0.91902 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.52 37.15 0.35 -1.66 16 2 C 0.08 1.43 2.57 -67.71 -0.17 1.25 16 3 H 0.05 0.94 7.19 -51.93 -0.37 0.57 16 4 C -0.13 -2.62 4.49 -26.73 -0.12 -2.74 16 5 C 0.02 0.58 4.83 -27.89 -0.13 0.44 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 7 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 10 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.68 -11.50 6.10 -99.74 -0.61 -12.10 16 15 C 0.09 1.41 2.37 -67.71 -0.16 1.25 16 16 H 0.04 0.78 7.45 -51.93 -0.39 0.39 16 17 C -0.12 -1.73 5.20 -26.72 -0.14 -1.87 16 18 C -0.11 -1.40 4.50 -26.73 -0.12 -1.52 16 19 C -0.07 -0.79 1.55 -90.62 -0.14 -0.93 16 20 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 21 C -0.07 -0.62 0.57 -154.51 -0.09 -0.71 16 22 C -0.14 -1.30 8.12 37.16 0.30 -1.00 16 23 C -0.14 -1.22 8.12 37.15 0.30 -0.92 16 24 C -0.15 -1.45 7.77 37.16 0.29 -1.16 16 25 C -0.12 -1.32 4.50 -26.76 -0.12 -1.44 16 26 C -0.10 -1.36 5.41 -26.76 -0.14 -1.50 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.69 7.51 -51.93 -0.39 0.30 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.01 0.37 6.91 -51.93 -0.36 0.01 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.35 6.41 6.50 -39.29 -0.26 6.16 16 36 H 0.07 1.08 8.12 -51.93 -0.42 0.65 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 39 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 40 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 43 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 49 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 50 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 51 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.06 0.77 7.41 -51.93 -0.38 0.39 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -28.55 378.76 -9.97 -38.52 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -10.28 Total: 3.20 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -0.51 Total: -26.02 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.13 Total: -38.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.55 -9.97 -38.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490094.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.426 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds