Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47449 * 2 1 4 4 C 1.53004 * 109.47192 * 119.99971 * 2 1 3 5 5 C 1.52993 * 109.47326 * 185.00206 * 4 2 1 6 6 C 1.50698 * 109.47165 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00394 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00055 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99943 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99957 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46990 * 89.99610 * 10 8 6 12 12 H 1.48497 * 109.47256 * 209.99738 * 10 8 6 13 13 H 1.48498 * 109.47102 * 330.00214 * 10 8 6 14 14 N 1.46899 * 109.47431 * 239.99559 * 2 1 3 15 15 C 1.46904 * 110.99745 * 113.44882 * 14 2 1 16 16 H 1.08995 * 109.47094 * 35.88482 * 15 14 2 17 17 C 1.53004 * 109.46672 * 155.88065 * 15 14 2 18 18 C 1.53009 * 109.46904 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47108 * 300.00442 * 18 17 15 20 20 H 1.09008 * 109.46960 * 299.99664 * 19 18 17 21 21 C 1.52996 * 109.47027 * 179.97438 * 19 18 17 22 22 C 1.53004 * 109.47159 * 59.99594 * 21 19 18 23 23 C 1.52995 * 109.47302 * 179.97438 * 21 19 18 24 24 C 1.53002 * 109.47337 * 300.00025 * 21 19 18 25 25 C 1.52997 * 109.47214 * 59.99713 * 19 18 17 26 26 C 1.52995 * 109.47428 * 275.87967 * 15 14 2 27 27 H 1.09003 * 109.47470 * 185.43523 * 1 2 3 28 28 H 1.08993 * 109.47422 * 305.44219 * 1 2 3 29 29 H 1.09001 * 109.46969 * 65.44402 * 1 2 3 30 30 H 1.09003 * 109.46609 * 304.99745 * 4 2 1 31 31 H 1.08995 * 109.46905 * 64.99768 * 4 2 1 32 32 H 1.08994 * 109.47301 * 299.99768 * 5 4 2 33 33 H 1.09004 * 109.47552 * 59.99744 * 5 4 2 34 34 H 0.96998 * 120.00033 * 180.02562 * 9 8 6 35 35 H 1.00901 * 111.00290 * 237.40101 * 14 2 1 36 36 H 1.08992 * 109.47476 * 300.00026 * 17 15 14 37 37 H 1.09002 * 109.47319 * 60.00627 * 17 15 14 38 38 H 1.09002 * 109.46550 * 60.00242 * 18 17 15 39 39 H 1.08992 * 109.46727 * 180.02562 * 18 17 15 40 40 H 1.09008 * 109.46976 * 60.00060 * 22 21 19 41 41 H 1.08994 * 109.47156 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.47327 * 300.00627 * 22 21 19 43 43 H 1.09005 * 109.46961 * 59.99953 * 23 21 19 44 44 H 1.09004 * 109.47641 * 179.97438 * 23 21 19 45 45 H 1.09001 * 109.47112 * 300.00547 * 23 21 19 46 46 H 1.08995 * 109.46751 * 59.99617 * 24 21 19 47 47 H 1.08994 * 109.47006 * 180.02562 * 24 21 19 48 48 H 1.09005 * 109.46689 * 299.99902 * 24 21 19 49 49 H 1.09001 * 109.46899 * 60.00351 * 25 19 18 50 50 H 1.09004 * 109.46796 * 180.02562 * 25 19 18 51 51 H 1.09001 * 109.47112 * 300.00618 * 26 15 14 52 52 H 1.09005 * 109.46961 * 60.00024 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5647 -0.6133 1.3138 6 6 4.0670 -1.3231 2.5446 7 1 3.3685 -1.8037 3.2137 8 6 5.4182 -1.3592 2.8165 9 7 6.2687 -0.7736 2.0020 10 14 6.0408 -2.2397 4.3418 11 1 6.3215 -3.6605 4.0132 12 1 7.2867 -1.5860 4.8168 13 1 5.0092 -2.1728 5.4077 14 7 2.0197 -0.6926 -1.1994 15 6 2.7097 0.2399 -2.1008 16 1 3.2541 0.9783 -1.5123 17 6 3.6919 -0.5351 -2.9815 18 6 4.4101 0.4359 -3.9209 19 6 3.3821 1.1448 -4.8049 20 1 2.8377 0.4060 -5.3931 21 6 4.1003 2.1163 -5.7437 22 6 5.0828 1.3418 -6.6245 23 6 3.0724 2.8247 -6.6281 24 6 4.8640 3.1532 -4.9177 25 6 2.4000 1.9197 -3.9241 26 6 1.6821 0.9492 -2.9849 27 1 -0.3634 -1.0230 0.0973 28 1 -0.3634 0.5959 0.8372 29 1 -0.3633 0.4271 -0.9347 30 1 1.6053 -0.2616 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9994 -1.0728 0.4261 33 1 3.8531 0.4370 1.3574 34 1 7.2194 -0.7993 2.1931 35 1 2.6187 -1.4657 -0.9513 36 1 4.4239 -1.0405 -2.3518 37 1 3.1474 -1.2736 -3.5701 38 1 4.9545 1.1747 -3.3326 39 1 5.1094 -0.1162 -4.5486 40 1 4.5387 0.6030 -7.2131 41 1 5.5941 2.0338 -7.2936 42 1 5.8151 0.8368 -5.9947 43 1 2.3721 3.3764 -6.0009 44 1 3.5839 3.5172 -7.2967 45 1 2.5285 2.0857 -7.2166 46 1 5.5963 2.6481 -4.2879 47 1 5.3753 3.8455 -5.5865 48 1 4.1640 3.7049 -4.2901 49 1 2.9444 2.6585 -3.3359 50 1 1.6673 2.4243 -4.5539 51 1 1.1376 0.2107 -3.5733 52 1 0.9824 1.5013 -2.3574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490094.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = -70.852615 kcal Electronic energy + Delta-G solvation = -23646.353702 eV Core-core repulsion = 20642.706192 eV Total energy + Delta-G solvation = -3003.647510 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80523 -38.72604 -36.31942 -34.93079 -32.36926 -31.91409 -30.84835 -28.29374 -28.10979 -28.01678 -26.91443 -23.54751 -23.39704 -22.89687 -21.26518 -20.66884 -19.16914 -18.51836 -17.06352 -16.56247 -16.14122 -16.08092 -15.70004 -15.03330 -14.87979 -14.79758 -14.74865 -14.44756 -14.36238 -13.94722 -13.52185 -13.32207 -13.27519 -13.07591 -12.92337 -12.85921 -12.72448 -12.57072 -12.48274 -12.37340 -12.25181 -12.16572 -11.94804 -11.84010 -11.70292 -11.52638 -11.50556 -11.26661 -11.10154 -11.03349 -10.78211 -10.64357 -10.58010 -9.28577 -8.22749 -6.34178 1.37164 1.38247 1.49412 2.38119 3.09961 3.24061 3.74132 3.80415 3.84520 4.02378 4.09005 4.15736 4.35464 4.39477 4.45645 4.47799 4.49223 4.59671 4.61635 4.67263 4.69352 4.76446 4.84234 4.89011 4.89255 4.97872 4.98945 5.00307 5.06070 5.10355 5.13059 5.14915 5.17693 5.19946 5.23428 5.28713 5.31109 5.34324 5.39648 5.46695 5.48972 5.51911 5.56334 5.65684 5.66287 5.72004 5.80984 6.21863 6.30755 6.50018 6.82180 7.35271 8.88364 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.003914 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.980607 B = 7151.473294 C = 8244.295230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.086 3.914 3 H 0.037 0.963 4 C -0.114 4.114 5 C 0.032 3.968 6 C -0.545 4.545 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.677 5.677 15 C 0.092 3.908 16 H 0.011 0.989 17 C -0.116 4.116 18 C -0.109 4.109 19 C -0.066 4.066 20 H 0.074 0.926 21 C -0.062 4.062 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.112 4.112 26 C -0.094 4.094 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.056 0.944 32 H -0.005 1.005 33 H -0.022 1.022 34 H 0.263 0.737 35 H 0.335 0.665 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.081 0.919 51 H 0.069 0.931 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 5.966 -17.563 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.024 4.024 3 H 0.055 0.945 4 C -0.152 4.152 5 C -0.005 4.005 6 C -0.583 4.583 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.188 1.188 14 N -0.308 5.308 15 C -0.018 4.018 16 H 0.029 0.971 17 C -0.154 4.154 18 C -0.147 4.147 19 C -0.085 4.085 20 H 0.093 0.907 21 C -0.062 4.062 22 C -0.200 4.200 23 C -0.197 4.197 24 C -0.204 4.204 25 C -0.150 4.150 26 C -0.132 4.132 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.013 0.987 33 H -0.003 1.003 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.099 0.901 51 H 0.088 0.912 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.982 6.047 -17.908 20.518 hybrid contribution 1.770 -0.268 1.656 2.439 sum -6.212 5.779 -16.252 18.333 Atomic orbital electron populations 1.21709 0.93169 1.01843 1.01419 1.21638 0.96475 0.95540 0.88700 0.94512 1.21917 0.96240 0.99822 0.97219 1.18941 0.92066 0.94133 0.95355 1.21694 0.92591 1.34666 1.09328 0.92395 1.25958 0.97322 0.96270 1.00052 1.70099 1.02714 1.45209 1.39052 0.85479 0.77808 0.78644 0.79323 1.19674 1.20741 1.18830 1.60845 1.42673 1.11193 1.16077 1.21591 0.93713 0.93207 0.93286 0.97108 1.21642 0.97374 0.98511 0.97843 1.21618 0.98010 0.97793 0.97254 1.21115 0.95309 0.96725 0.95339 0.90748 1.20520 0.95643 0.95059 0.95008 1.21922 0.98835 1.00056 0.99187 1.21895 0.98398 1.00264 0.99105 1.21994 0.99991 0.98633 0.99785 1.21676 0.98310 0.97560 0.97434 1.21445 0.96846 0.97960 0.96983 0.92584 0.92384 0.91945 0.92717 0.92533 0.98651 1.00343 0.92853 0.84594 0.94568 0.90644 0.93227 0.91074 0.92247 0.92249 0.93095 0.92282 0.92335 0.92259 0.93601 0.92223 0.92694 0.92868 0.90089 0.91200 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.52 9.52 71.98 0.69 -2.83 16 2 C 0.09 3.07 2.57 44.91 0.12 3.18 16 3 H 0.04 1.41 7.19 -2.39 -0.02 1.39 16 4 C -0.11 -4.80 4.49 30.59 0.14 -4.66 16 5 C 0.03 1.72 4.83 29.84 0.14 1.87 16 6 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 8 C 0.00 0.11 5.46 84.66 0.46 0.57 16 9 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 10 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 14 N -0.68 -23.22 6.10 -469.48 -2.86 -26.08 16 15 C 0.09 2.93 2.37 44.91 0.11 3.03 16 16 H 0.01 0.42 7.45 -2.39 -0.02 0.40 16 17 C -0.12 -3.45 5.20 30.60 0.16 -3.29 16 18 C -0.11 -2.75 4.50 30.60 0.14 -2.61 16 19 C -0.07 -1.35 1.55 -10.80 -0.02 -1.37 16 20 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 21 C -0.06 -1.09 0.57 -52.18 -0.03 -1.12 16 22 C -0.14 -2.36 8.12 71.98 0.58 -1.77 16 23 C -0.14 -2.04 8.12 71.98 0.58 -1.45 16 24 C -0.15 -2.83 7.77 71.98 0.56 -2.27 16 25 C -0.11 -2.40 4.50 30.58 0.14 -2.26 16 26 C -0.09 -2.39 5.41 30.57 0.17 -2.22 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.62 7.51 -2.39 -0.02 1.60 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.00 -0.27 6.91 -2.39 -0.02 -0.29 16 33 H -0.02 -1.29 8.14 -2.38 -0.02 -1.31 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.34 12.89 6.50 -89.69 -0.58 12.31 16 36 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.41 6.43 -2.39 -0.02 1.39 16 39 H 0.07 1.66 6.43 -2.39 -0.02 1.65 16 40 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 0.92 6.43 -2.39 -0.02 0.91 16 43 H 0.06 0.85 6.43 -2.38 -0.02 0.84 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.04 1.01 6.43 -2.39 -0.02 0.99 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.05 1.08 6.43 -2.38 -0.02 1.06 16 49 H 0.05 1.26 6.43 -2.39 -0.02 1.24 16 50 H 0.08 1.45 6.43 -2.38 -0.02 1.43 16 51 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.05 1.42 7.41 -2.38 -0.02 1.40 16 Total: -1.00 -62.31 378.76 3.88 -58.44 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.26 Total: 26.28 kcal Atomic # 6 Polarization: -52.73 SS G_CDS: 4.17 Total: -48.56 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.58 Total: -83.05 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -62.31 3.88 -58.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490094.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.416 kcal (2) G-P(sol) polarization free energy of solvation -62.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds