Wall clock time and date at job start Tue Mar 31 2020 05:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47278 * 2 1 4 4 C 1.53001 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47034 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47169 * 54.99410 * 5 4 3 7 7 C 1.52993 * 109.47528 * 174.99647 * 5 4 3 8 8 C 1.52997 * 109.47522 * 186.50711 * 7 5 4 9 9 C 1.53007 * 109.46747 * 66.47590 * 8 7 5 10 10 C 1.53002 * 109.47124 * 186.47044 * 8 7 5 11 11 N 1.46900 * 109.47233 * 295.00029 * 5 4 3 12 12 C 1.46898 * 111.00389 * 138.69332 * 11 5 4 13 13 H 1.09005 * 109.35142 * 41.30296 * 12 11 5 14 14 C 1.52955 * 109.41238 * 161.11715 * 12 11 5 15 15 C 1.53227 * 109.41665 * 183.71600 * 14 12 11 16 16 C 1.51272 * 108.53591 * 305.36732 * 15 14 12 17 17 C 1.37880 * 120.85047 * 231.36780 * 16 15 14 18 18 N 1.31510 * 119.99927 * 0.02562 * 17 16 15 19 19 Si 1.86801 * 119.99882 * 180.02562 * 17 16 15 20 20 H 1.48497 * 109.47139 * 89.99782 * 19 17 16 21 21 H 1.48499 * 109.47049 * 210.00180 * 19 17 16 22 22 H 1.48497 * 109.46848 * 329.99901 * 19 17 16 23 23 C 1.51272 * 118.29908 * 51.34892 * 16 15 14 24 24 C 1.52978 * 109.43727 * 281.46792 * 12 11 5 25 25 H 1.09000 * 109.46963 * 300.00040 * 1 2 3 26 26 H 1.08992 * 109.47348 * 60.00191 * 1 2 3 27 27 H 1.09005 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47407 * 239.99360 * 2 1 3 29 29 H 1.09006 * 109.47464 * 119.99806 * 2 1 3 30 30 H 1.08999 * 109.47636 * 59.99854 * 3 2 1 31 31 H 1.09001 * 109.46930 * 299.99566 * 3 2 1 32 32 H 1.08997 * 109.47765 * 59.99841 * 4 3 2 33 33 H 1.08999 * 109.47215 * 299.98945 * 4 3 2 34 34 H 1.09005 * 109.47186 * 306.51586 * 7 5 4 35 35 H 1.09005 * 109.47185 * 66.50513 * 7 5 4 36 36 H 1.08993 * 109.47237 * 306.47632 * 8 7 5 37 37 H 1.08998 * 109.46698 * 300.00146 * 9 8 7 38 38 H 1.08993 * 109.47218 * 60.00031 * 9 8 7 39 39 H 1.08993 * 109.46608 * 180.02562 * 9 8 7 40 40 H 1.09004 * 109.46522 * 60.00337 * 10 8 7 41 41 H 1.09004 * 109.46680 * 179.97438 * 10 8 7 42 42 H 1.08993 * 109.47544 * 300.00400 * 10 8 7 43 43 H 1.00899 * 110.99898 * 262.65380 * 11 5 4 44 44 H 1.09002 * 109.48440 * 63.73032 * 14 12 11 45 45 H 1.09002 * 109.48643 * 303.69947 * 14 12 11 46 46 H 1.08997 * 109.63019 * 65.07959 * 15 14 12 47 47 H 1.09001 * 109.62870 * 185.46246 * 15 14 12 48 48 H 0.97002 * 119.99944 * 179.97438 * 18 17 16 49 49 H 1.08995 * 109.62474 * 68.36547 * 23 16 15 50 50 H 1.09000 * 109.62358 * 188.74822 * 23 16 15 51 51 H 1.09007 * 109.47601 * 56.31547 * 24 12 11 52 52 H 1.09001 * 109.48974 * 296.29142 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6457 3.4243 0.8405 7 6 5.6048 2.8869 0.1239 8 6 6.1015 4.3249 0.2863 9 6 5.6167 4.8835 1.6258 10 6 7.6309 4.3434 0.2496 11 7 3.6909 3.5414 -1.2565 12 6 3.2388 4.9177 -1.0129 13 1 3.8916 5.3873 -0.2770 14 6 3.2938 5.7098 -2.3202 15 6 2.9113 7.1685 -2.0484 16 6 1.5637 7.1923 -1.3616 17 6 0.5412 7.9851 -1.8380 18 7 0.7308 8.7331 -2.9030 19 14 -1.1133 7.9968 -0.9709 20 1 -1.1167 9.0511 0.0748 21 1 -2.1875 8.2748 -1.9578 22 1 -1.3509 6.6735 -0.3403 23 6 1.3665 6.3237 -0.1389 24 6 1.8050 4.8957 -0.4800 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 5.8987 2.3004 0.9944 35 1 6.0436 2.4502 -0.7733 36 1 5.7110 4.9381 -0.5257 37 1 4.5271 4.8702 1.6519 38 1 6.0072 4.2703 2.4379 39 1 5.9701 5.9081 1.7413 40 1 7.9762 3.9454 -0.7046 41 1 7.9847 5.3680 0.3649 42 1 8.0214 3.7303 1.0617 43 1 4.4471 3.5220 -1.9242 44 1 2.5947 5.2781 -3.0365 45 1 4.3038 5.6688 -2.7279 46 1 3.6593 7.6290 -1.4030 47 1 2.8549 7.7138 -2.9904 48 1 0.0113 9.2906 -3.2384 49 1 1.9715 6.7060 0.6832 50 1 0.3148 6.3282 0.1476 51 1 1.7599 4.2775 0.4167 52 1 1.1410 4.4832 -1.2397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173249986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:52 Heat of formation + Delta-G solvation = -58.788324 kcal Electronic energy + Delta-G solvation = -24176.333620 eV Core-core repulsion = 21173.209258 eV Total energy + Delta-G solvation = -3003.124363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.94156 -36.26356 -35.43262 -33.56877 -32.00137 -30.19444 -29.37062 -27.99756 -27.15811 -25.95520 -24.07064 -21.84426 -21.39954 -20.98233 -20.12597 -19.65008 -18.93832 -16.04729 -15.91527 -15.40018 -14.55903 -14.45957 -14.35355 -14.11248 -13.71826 -13.31833 -13.15236 -12.94260 -12.69690 -12.47357 -12.34863 -12.20254 -12.12073 -11.81831 -11.77579 -11.55118 -11.14600 -11.12043 -11.00294 -10.92729 -10.77774 -10.69219 -10.57249 -10.38660 -10.22535 -10.21531 -10.07256 -9.92220 -9.79129 -9.38631 -8.81729 -8.52453 -8.39711 -7.74249 -6.04024 -3.93664 3.30704 3.39071 3.40208 4.43373 4.65255 4.69200 4.95881 5.00940 5.12738 5.13882 5.24500 5.29306 5.48119 5.53428 5.55748 5.62030 5.69926 5.78218 5.85599 5.88817 5.91116 5.92304 5.93145 5.98093 6.03323 6.05923 6.12527 6.18539 6.22861 6.29129 6.31796 6.41208 6.45278 6.48872 6.56277 6.65297 6.75555 6.81510 6.89513 7.01651 7.05232 7.15159 7.20131 7.53444 7.69071 7.77526 7.82687 7.93408 8.01493 8.46365 9.03712 9.61226 11.05811 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.006139 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.884042 B = 4559.645323 C = 6265.276130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.101 4.101 5 C 0.083 3.917 6 H 0.074 0.926 7 C -0.136 4.136 8 C -0.104 4.104 9 C -0.148 4.148 10 C -0.144 4.144 11 N -0.681 5.681 12 C 0.097 3.903 13 H 0.038 0.962 14 C -0.106 4.106 15 C 0.012 3.988 16 C -0.481 4.481 17 C 0.074 3.926 18 N -0.893 5.893 19 Si 0.885 3.115 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.264 1.264 23 C -0.023 4.023 24 C -0.089 4.089 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.331 0.669 44 H 0.055 0.945 45 H 0.023 0.977 46 H -0.001 1.001 47 H 0.055 0.945 48 H 0.263 0.737 49 H 0.011 0.989 50 H 0.032 0.968 51 H 0.028 0.972 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 -13.687 6.530 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.151 4.151 4 C -0.139 4.139 5 C -0.028 4.028 6 H 0.093 0.907 7 C -0.174 4.174 8 C -0.123 4.123 9 C -0.205 4.205 10 C -0.201 4.201 11 N -0.312 5.312 12 C -0.011 4.011 13 H 0.056 0.944 14 C -0.144 4.144 15 C -0.026 4.026 16 C -0.500 4.500 17 C -0.128 4.128 18 N -0.531 5.531 19 Si 0.713 3.287 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.061 4.061 24 C -0.127 4.127 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.149 0.851 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.018 0.982 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.030 0.970 50 H 0.051 0.949 51 H 0.046 0.954 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.991 -13.813 6.403 16.753 hybrid contribution -0.048 0.498 0.576 0.763 sum 6.943 -13.315 6.979 16.559 Atomic orbital electron populations 1.21768 0.96281 1.00871 1.02041 1.21541 0.95593 0.97862 1.01062 1.21545 0.95153 0.95394 1.02987 1.21542 0.96004 0.95863 1.00520 1.21677 0.92213 0.95276 0.93587 0.90746 1.22302 0.97126 0.96323 1.01696 1.21215 0.95399 0.96762 0.98888 1.21894 1.01739 1.00497 0.96399 1.21820 0.95652 1.01444 1.01228 1.60676 1.40942 1.19360 1.10220 1.21556 0.96341 0.85664 0.97563 0.94429 1.21749 0.97701 0.99431 0.95520 1.19341 0.94442 0.90591 0.98187 1.20037 0.97242 1.22751 1.09962 1.24841 0.98230 0.95016 0.94702 1.69840 1.33070 1.27295 1.22893 0.86710 0.84018 0.78567 0.79359 1.20583 1.21729 1.18926 1.19844 0.96753 0.92807 0.96682 1.21541 0.95185 0.97941 0.98063 0.92943 0.92551 0.93420 0.92499 0.92948 0.92877 0.90153 0.92372 0.93117 0.92092 0.92048 0.90505 0.92043 0.93215 0.92836 0.92990 0.92856 0.93125 0.85089 0.92604 0.95784 0.98231 0.92622 0.92741 0.97046 0.94938 0.95380 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.38 5.93 -26.73 -0.16 -1.54 16 3 C -0.11 -1.48 5.01 -26.73 -0.13 -1.61 16 4 C -0.10 -1.22 4.89 -26.73 -0.13 -1.35 16 5 C 0.08 1.09 1.79 -67.71 -0.12 0.97 16 6 H 0.07 1.10 4.98 -51.93 -0.26 0.84 16 7 C -0.14 -1.57 3.99 -26.74 -0.11 -1.67 16 8 C -0.10 -1.28 2.40 -90.62 -0.22 -1.50 16 9 C -0.15 -1.86 8.51 37.16 0.32 -1.55 16 10 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 11 N -0.68 -10.45 5.32 -99.77 -0.53 -10.98 16 12 C 0.10 1.80 1.50 -67.75 -0.10 1.70 16 13 H 0.04 0.71 4.78 -51.93 -0.25 0.47 16 14 C -0.11 -2.23 5.30 -26.64 -0.14 -2.37 16 15 C 0.01 0.31 5.96 -27.49 -0.16 0.14 16 16 C -0.48 -12.73 5.51 -98.92 -0.55 -13.28 16 17 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 18 N -0.89 -26.00 12.73 55.43 0.71 -25.30 16 19 Si 0.88 21.40 27.53 -169.99 -4.68 16.72 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.19 6.11 56.52 0.35 -5.84 16 23 C -0.02 -0.54 5.60 -27.48 -0.15 -0.69 16 24 C -0.09 -1.82 5.37 -26.62 -0.14 -1.96 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.73 8.03 -51.93 -0.42 0.31 16 31 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.69 8.00 -51.93 -0.42 0.27 16 36 H 0.08 1.11 5.91 -51.93 -0.31 0.80 16 37 H 0.06 0.86 5.67 -51.93 -0.29 0.57 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.33 4.87 7.72 -39.29 -0.30 4.56 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.02 0.45 8.06 -51.93 -0.42 0.04 16 46 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 47 H 0.06 1.53 7.08 -51.93 -0.37 1.16 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.03 0.77 4.59 -51.93 -0.24 0.53 16 51 H 0.03 0.52 6.98 -51.92 -0.36 0.16 16 52 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -26.93 378.50 -10.40 -37.33 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -10.41 Total: 1.79 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -1.19 Total: -25.27 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.17 Total: -36.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.68 Total: 16.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -26.93 -10.40 -37.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173249986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.457 kcal (2) G-P(sol) polarization free energy of solvation -26.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds