Wall clock time and date at job start Tue Mar 31 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52992 * 109.47403 * 2 1 4 4 C 1.53003 * 109.47334 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46894 * 175.01343 * 4 3 2 6 6 H 1.09001 * 109.47224 * 302.05837 * 5 4 3 7 7 C 1.52997 * 109.46803 * 182.06170 * 5 4 3 8 8 C 1.53003 * 109.47132 * 175.51514 * 7 5 4 9 9 C 1.52997 * 109.47304 * 179.19068 * 8 7 5 10 10 C 1.52999 * 109.47188 * 299.19514 * 8 7 5 11 11 N 1.46897 * 109.47158 * 62.05973 * 5 4 3 12 12 C 1.46846 * 110.99901 * 211.18615 * 11 5 4 13 13 C 1.53044 * 109.52429 * 174.16387 * 12 11 5 14 14 C 1.53117 * 109.31028 * 59.15861 * 13 12 11 15 15 C 1.53122 * 109.16146 * 302.40658 * 14 13 12 16 16 H 1.08998 * 109.50254 * 297.63895 * 15 14 13 17 17 C 1.50701 * 109.50609 * 177.55426 * 15 14 13 18 18 H 1.07998 * 119.99932 * 240.07534 * 17 15 14 19 19 C 1.37881 * 119.99576 * 60.07964 * 17 15 14 20 20 N 1.31508 * 119.99971 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99542 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47431 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46745 * 119.99934 * 21 19 17 24 24 H 1.48500 * 109.46972 * 240.00021 * 21 19 17 25 25 C 1.46847 * 111.00086 * 86.98069 * 11 5 4 26 26 H 1.09000 * 109.47352 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47341 * 299.99683 * 1 2 3 28 28 H 1.08999 * 109.47304 * 60.00077 * 1 2 3 29 29 H 1.09006 * 109.46981 * 239.99994 * 2 1 3 30 30 H 1.08997 * 109.47188 * 120.00692 * 2 1 3 31 31 H 1.09006 * 109.47057 * 60.00040 * 3 2 1 32 32 H 1.08997 * 109.47514 * 300.00493 * 3 2 1 33 33 H 1.08995 * 109.46872 * 55.01238 * 4 3 2 34 34 H 1.08997 * 109.46944 * 295.01084 * 4 3 2 35 35 H 1.09003 * 109.47348 * 295.51553 * 7 5 4 36 36 H 1.08999 * 109.47482 * 55.51394 * 7 5 4 37 37 H 1.09003 * 109.46690 * 59.19329 * 8 7 5 38 38 H 1.09007 * 109.46867 * 59.99990 * 9 8 7 39 39 H 1.08992 * 109.47297 * 179.97438 * 9 8 7 40 40 H 1.09002 * 109.47514 * 300.00499 * 9 8 7 41 41 H 1.09001 * 109.47089 * 59.99690 * 10 8 7 42 42 H 1.08993 * 109.46890 * 179.97438 * 10 8 7 43 43 H 1.09007 * 109.46845 * 299.99926 * 10 8 7 44 44 H 1.08996 * 109.46313 * 294.18127 * 12 11 5 45 45 H 1.08999 * 109.46442 * 54.15029 * 12 11 5 46 46 H 1.08991 * 109.50225 * 179.12120 * 13 12 11 47 47 H 1.08996 * 109.49763 * 299.19929 * 13 12 11 48 48 H 1.08994 * 109.55842 * 182.48100 * 14 13 12 49 49 H 1.09005 * 109.49523 * 62.28814 * 14 13 12 50 50 H 0.97009 * 119.99852 * 179.97438 * 20 19 17 51 51 H 1.09002 * 109.46496 * 65.81843 * 25 11 5 52 52 H 1.09009 * 109.45187 * 305.84867 * 25 11 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0799 2.8795 -0.1260 6 1 3.6864 3.3263 -1.0390 7 6 5.6090 2.8753 -0.1784 8 6 6.1151 4.2995 -0.4159 9 6 7.6448 4.2985 -0.4481 10 6 5.5771 4.8158 -1.7519 11 7 3.6318 3.6611 1.0342 12 6 3.4209 5.0682 0.6711 13 6 2.8181 5.8187 1.8610 14 6 3.7684 5.7177 3.0573 15 6 4.0103 4.2414 3.3839 16 1 3.0685 3.7727 3.6690 17 6 4.9918 4.1321 4.5222 18 1 5.9270 3.6109 4.3807 19 6 4.6956 4.6975 5.7444 20 7 3.5570 5.3325 5.9165 21 14 5.9119 4.5614 7.1557 22 1 7.1080 3.8041 6.7071 23 1 6.3216 5.9215 7.5889 24 1 5.2733 3.8510 8.2927 25 6 4.5785 3.5368 2.1499 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9329 0.8533 -0.8428 34 1 3.9337 1.0078 0.9304 35 1 6.0039 2.5022 0.7666 36 1 5.9430 2.2307 -0.9915 37 1 5.7692 4.9471 0.3898 38 1 7.9907 3.6508 -1.2538 39 1 8.0053 5.3130 -0.6178 40 1 8.0281 3.9306 0.5036 41 1 4.4874 4.8166 -1.7288 42 1 5.9373 5.8306 -1.9208 43 1 5.9231 4.1682 -2.5576 44 1 4.3753 5.5208 0.4021 45 1 2.7396 5.1261 -0.1777 46 1 2.6762 6.8664 1.5963 47 1 1.8569 5.3757 2.1213 48 1 3.3230 6.2133 3.9199 49 1 4.7162 6.1962 2.8105 50 1 3.3484 5.7300 6.7765 51 1 5.5275 3.9966 1.8739 52 1 4.7379 2.4822 2.3750 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173256521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:07 Heat of formation + Delta-G solvation = -48.397249 kcal Electronic energy + Delta-G solvation = -24457.602184 eV Core-core repulsion = 21454.928413 eV Total energy + Delta-G solvation = -3002.673772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.99010 -37.42513 -36.39133 -34.99199 -33.71913 -31.70320 -31.11491 -28.68734 -28.12427 -26.84313 -25.58403 -24.22448 -23.06131 -22.00392 -21.37255 -20.41292 -20.06206 -18.38283 -17.23487 -16.45773 -16.22737 -15.90157 -15.64996 -15.21986 -14.96995 -14.77274 -14.40591 -14.24449 -14.16791 -13.94197 -13.73349 -13.41783 -13.18616 -13.11642 -12.86360 -12.85298 -12.67769 -12.51353 -12.41073 -12.25332 -12.06918 -11.92804 -11.80757 -11.71739 -11.63565 -11.42335 -11.38668 -11.26447 -11.16409 -10.92004 -10.73287 -10.51832 -10.34945 -8.77581 -8.06657 -6.20188 1.38351 1.40177 1.51218 2.42761 3.20239 3.23227 3.72257 3.99033 4.06894 4.19578 4.20721 4.29121 4.30743 4.37227 4.44647 4.50245 4.62342 4.64323 4.69551 4.71015 4.78764 4.83162 4.87198 4.90055 4.96849 4.98995 5.02446 5.04613 5.07244 5.09998 5.13603 5.15677 5.19798 5.25211 5.26544 5.34297 5.38046 5.43630 5.45918 5.52422 5.54740 5.59411 5.65163 5.66685 5.72275 6.04278 6.20638 6.29974 6.55554 6.59253 6.94267 7.47588 8.97989 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.005886 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.298387 B = 4755.625979 C = 5913.225718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.101 4.101 5 C 0.083 3.917 6 H 0.088 0.912 7 C -0.137 4.137 8 C -0.113 4.113 9 C -0.141 4.141 10 C -0.141 4.141 11 N -0.533 5.533 12 C 0.057 3.943 13 C -0.112 4.112 14 C -0.100 4.100 15 C 0.053 3.947 16 H -0.011 1.011 17 C -0.530 4.530 18 H 0.048 0.952 19 C 0.014 3.986 20 N -0.916 5.916 21 Si 0.950 3.050 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.087 3.913 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.020 0.980 50 H 0.259 0.741 51 H 0.029 0.971 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -4.984 -17.236 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.141 4.141 4 C -0.139 4.139 5 C -0.025 4.025 6 H 0.106 0.894 7 C -0.176 4.176 8 C -0.131 4.131 9 C -0.199 4.199 10 C -0.198 4.198 11 N -0.257 5.257 12 C -0.070 4.070 13 C -0.149 4.149 14 C -0.138 4.138 15 C 0.034 3.966 16 H 0.008 0.992 17 C -0.569 4.569 18 H 0.066 0.934 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.776 3.224 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.040 4.040 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.039 0.961 50 H 0.068 0.932 51 H 0.047 0.953 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.053 -5.085 -16.960 17.706 hybrid contribution 1.245 0.439 1.354 1.891 sum 1.298 -4.647 -15.605 16.334 Atomic orbital electron populations 1.21751 0.95740 1.01703 1.01555 1.21534 0.96073 0.96845 1.01585 1.21380 0.94988 0.96205 1.01498 1.21541 0.96069 0.95253 1.01026 1.21897 0.92856 0.94644 0.93143 0.89357 1.22244 0.96625 0.96952 1.01790 1.21434 0.96148 0.96757 0.98751 1.21777 0.94966 1.01812 1.01321 1.21869 1.01046 1.00933 0.95976 1.62060 1.46925 1.10048 1.06643 1.22322 0.99621 0.88247 0.96808 1.21593 0.98681 0.98971 0.95705 1.21405 0.96445 0.99123 0.96810 1.18594 0.94210 0.92336 0.91468 0.99238 1.21549 1.03931 1.34451 0.96985 0.93398 1.25687 0.96820 0.95025 1.00873 1.70052 1.24043 1.37173 1.24322 0.85635 0.79492 0.77789 0.79523 1.19230 1.20605 1.20697 1.21949 0.93025 0.98206 0.90850 0.92126 0.93948 0.92219 0.91142 0.93360 0.93549 0.92012 0.90427 0.94172 0.93234 0.90359 0.92220 0.91540 0.92565 0.94218 0.92396 0.92687 0.91589 0.93603 0.90195 0.91781 0.93668 0.92881 0.96125 0.93202 0.95271 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.12 -2.71 5.93 30.59 0.18 -2.52 16 3 C -0.10 -2.62 5.01 30.59 0.15 -2.47 16 4 C -0.10 -2.58 4.83 30.60 0.15 -2.44 16 5 C 0.08 2.23 1.80 44.92 0.08 2.31 16 6 H 0.09 2.11 5.72 -2.39 -0.01 2.10 16 7 C -0.14 -3.57 3.67 30.59 0.11 -3.46 16 8 C -0.11 -2.87 1.93 -10.79 -0.02 -2.89 16 9 C -0.14 -3.32 9.19 71.98 0.66 -2.66 16 10 C -0.14 -2.87 8.28 71.98 0.60 -2.28 16 11 N -0.53 -18.41 3.89 -871.09 -3.39 -21.80 16 12 C 0.06 1.88 4.15 86.33 0.36 2.24 16 13 C -0.11 -4.36 6.09 30.65 0.19 -4.17 16 14 C -0.10 -4.87 5.03 30.67 0.15 -4.71 16 15 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 16 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 17 C -0.53 -30.06 8.56 25.60 0.22 -29.84 16 18 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 19 C 0.01 0.82 5.30 84.66 0.45 1.27 16 20 N -0.92 -54.42 11.35 21.45 0.24 -54.18 16 21 Si 0.95 44.68 29.54 68.60 2.03 46.70 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 C 0.09 3.68 3.19 86.33 0.27 3.95 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.48 7.82 -2.38 -0.02 1.46 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.20 7.48 -2.39 -0.02 1.19 16 35 H 0.05 1.53 6.09 -2.39 -0.01 1.51 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.90 3.75 -2.39 -0.01 1.89 16 38 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.18 5.36 -2.39 -0.01 1.17 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.05 1.47 4.30 -2.39 -0.01 1.46 16 45 H 0.08 2.22 7.85 -2.39 -0.02 2.20 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 2.96 6.15 -2.39 -0.01 2.94 16 49 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 50 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 51 H 0.03 1.24 4.97 -2.39 -0.01 1.23 16 52 H 0.04 1.88 7.04 -2.38 -0.02 1.86 16 Total: -1.00 -60.77 372.24 3.96 -56.80 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.84 Total: 19.78 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 4.24 Total: -47.31 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -3.15 Total: -75.98 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -60.77 3.96 -56.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173256521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.408 kcal (2) G-P(sol) polarization free energy of solvation -60.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds