Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46907 * 2 1 4 4 C 1.53005 * 109.47179 * 239.99908 * 2 1 3 5 5 C 1.52995 * 109.47275 * 119.99680 * 2 1 3 6 6 C 1.53001 * 109.47036 * 79.40883 * 5 2 1 7 7 C 1.53004 * 109.46880 * 66.87222 * 6 5 2 8 8 C 1.52998 * 109.47125 * 306.87183 * 6 5 2 9 9 N 1.46893 * 109.47249 * 186.87178 * 6 5 2 10 10 C 1.46901 * 111.00334 * 173.40027 * 9 6 5 11 11 C 1.52993 * 109.47580 * 139.11062 * 10 9 6 12 12 C 1.52999 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47355 * 300.00160 * 12 11 10 14 14 C 1.50702 * 109.46939 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99892 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99953 * 359.72544 * 16 14 13 18 18 Si 1.86802 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47053 * 89.99787 * 18 16 14 20 20 H 1.48496 * 109.47257 * 210.00187 * 18 16 14 21 21 H 1.48506 * 109.46960 * 329.99943 * 18 16 14 22 22 C 1.52999 * 109.47038 * 60.00141 * 13 12 11 23 23 C 1.53002 * 109.46862 * 259.11196 * 10 9 6 24 24 H 1.08996 * 109.46951 * 298.21688 * 1 2 3 25 25 H 1.09004 * 109.47010 * 58.20969 * 1 2 3 26 26 H 1.09000 * 109.47138 * 178.21403 * 1 2 3 27 27 H 1.09011 * 109.46752 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46978 * 299.99226 * 3 2 1 29 29 H 1.08989 * 109.47314 * 60.00068 * 3 2 1 30 30 H 1.08992 * 109.46961 * 312.33765 * 4 2 1 31 31 H 1.09003 * 109.47052 * 72.33398 * 4 2 1 32 32 H 1.09000 * 109.46714 * 192.33298 * 4 2 1 33 33 H 1.09004 * 109.46955 * 319.41357 * 5 2 1 34 34 H 1.08998 * 109.47445 * 199.41331 * 5 2 1 35 35 H 1.08999 * 109.46748 * 147.96068 * 7 6 5 36 36 H 1.09001 * 109.46655 * 267.95487 * 7 6 5 37 37 H 1.08994 * 109.47193 * 27.95709 * 7 6 5 38 38 H 1.08998 * 109.47347 * 310.04047 * 8 6 5 39 39 H 1.09002 * 109.46988 * 70.03834 * 8 6 5 40 40 H 1.09003 * 109.46960 * 190.03887 * 8 6 5 41 41 H 1.00901 * 111.00319 * 297.34900 * 9 6 5 42 42 H 1.08999 * 109.46898 * 19.10748 * 10 9 6 43 43 H 1.09001 * 109.47116 * 60.00426 * 11 10 9 44 44 H 1.08998 * 109.47421 * 300.00389 * 11 10 9 45 45 H 1.09005 * 109.47179 * 179.97438 * 12 11 10 46 46 H 1.09001 * 109.47247 * 60.00333 * 12 11 10 47 47 H 1.08999 * 109.46998 * 299.99739 * 13 12 11 48 48 H 0.97002 * 119.99893 * 179.97438 * 17 16 14 49 49 H 1.08999 * 109.47554 * 59.99939 * 22 13 12 50 50 H 1.08998 * 109.46982 * 179.97438 * 22 13 12 51 51 H 1.09004 * 109.47579 * 299.99898 * 23 10 9 52 52 H 1.09005 * 109.47188 * 59.99499 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7211 1.2492 6 6 1.9600 -2.2337 1.0333 7 6 2.9520 -2.6465 -0.0561 8 6 0.5420 -2.6131 0.6020 9 7 2.2925 -2.9254 2.2858 10 6 2.0750 -4.3730 2.1616 11 6 3.2159 -5.1214 2.8538 12 6 2.9890 -6.6289 2.7249 13 6 1.6598 -7.0029 3.3840 14 6 1.4361 -8.4878 3.2565 15 1 2.1689 -9.1032 2.7558 16 6 0.2960 -9.0605 3.7789 17 7 -0.5938 -8.3118 4.3933 18 14 0.0190 -10.9012 3.6215 19 1 0.6059 -11.5924 4.7975 20 1 -1.4385 -11.1790 3.5604 21 1 0.6695 -11.3953 2.3813 22 6 0.5190 -6.2545 2.6917 23 6 0.7458 -4.7473 2.8203 24 1 -0.3633 0.4859 0.9055 25 1 -0.3633 0.5414 -0.8735 26 1 -0.3633 -1.0272 -0.0320 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.5086 -1.6657 -1.3659 31 1 1.8671 -0.0965 -2.1256 32 1 3.1077 -0.9153 -1.1463 33 1 1.4253 -0.4434 2.1055 34 1 3.0749 -0.4351 1.4369 35 1 3.3246 -3.6493 0.1529 36 1 2.4518 -2.6392 -1.0245 37 1 3.7861 -1.9451 -0.0726 38 1 -0.1782 -2.1648 1.2865 39 1 0.3593 -2.2471 -0.4083 40 1 0.4344 -3.6976 0.6206 41 1 3.2400 -2.7252 2.5690 42 1 2.0478 -4.6471 1.1070 43 1 3.2430 -4.8473 3.9084 44 1 4.1628 -4.8546 2.3846 45 1 3.8020 -7.1622 3.2177 46 1 2.9616 -6.9034 1.6704 47 1 1.6873 -6.7285 4.4385 48 1 -1.3961 -8.7147 4.7606 49 1 0.4915 -6.5289 1.6372 50 1 -0.4280 -6.5213 3.1609 51 1 0.7729 -4.4732 3.8750 52 1 -0.0670 -4.2141 2.3271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = 3.829512 kcal Electronic energy + Delta-G solvation = -24253.449231 eV Core-core repulsion = 21253.040181 eV Total energy + Delta-G solvation = -3000.409049 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28159 -37.77882 -35.08433 -32.62292 -30.66783 -29.89720 -28.97129 -28.56898 -27.06658 -26.41151 -25.58273 -24.09666 -21.51718 -20.68540 -19.11315 -19.02397 -18.45512 -16.28488 -15.97986 -15.44812 -14.79641 -14.54204 -14.31098 -14.06933 -13.90933 -13.51075 -13.35741 -13.00945 -12.80775 -12.68056 -12.18646 -12.14813 -11.91399 -11.65478 -11.60728 -11.54211 -11.29712 -11.00862 -10.96396 -10.77136 -10.75475 -10.61404 -10.52741 -10.38281 -10.28483 -10.18477 -10.08776 -9.77531 -9.68411 -9.25035 -8.84377 -8.57160 -8.22927 -7.95923 -5.91460 -3.97511 3.33441 3.40218 3.43306 4.29812 4.48886 4.70984 4.74948 4.80507 5.11834 5.13983 5.25542 5.37707 5.45977 5.49211 5.50644 5.51603 5.60477 5.64190 5.69186 5.71553 5.80547 5.82939 5.87079 5.94362 5.96879 6.05202 6.09022 6.14127 6.17082 6.23314 6.31911 6.34244 6.43969 6.46503 6.52411 6.55033 6.55669 6.78925 6.81174 6.82446 7.03281 7.23499 7.36201 7.54604 7.66477 7.77643 7.84006 8.11100 8.25802 8.54990 9.06792 9.66615 11.13891 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.003584 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.519849 B = 7810.840731 C = 8070.621388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.167 4.167 5 C -0.094 4.094 6 C 0.116 3.884 7 C -0.201 4.201 8 C -0.159 4.159 9 N -0.679 5.679 10 C 0.091 3.909 11 C -0.123 4.123 12 C -0.105 4.105 13 C 0.050 3.950 14 C -0.513 4.513 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.109 4.109 23 C -0.103 4.103 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.333 0.667 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.024 0.976 48 H 0.258 0.742 49 H 0.028 0.972 50 H 0.090 0.910 51 H 0.053 0.947 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 17.002 -9.307 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.223 4.223 5 C -0.132 4.132 6 C 0.025 3.975 7 C -0.260 4.260 8 C -0.215 4.215 9 N -0.309 5.309 10 C -0.018 4.018 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.031 3.969 14 C -0.551 4.551 15 H 0.070 0.930 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.148 4.148 23 C -0.141 4.141 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.151 0.849 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.068 0.932 49 H 0.047 0.953 50 H 0.109 0.891 51 H 0.072 0.928 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.848 17.111 -8.917 19.675 hybrid contribution 0.646 -1.195 -0.564 1.471 sum 4.494 15.915 -9.481 19.063 Atomic orbital electron populations 1.22601 0.94822 1.04325 1.01101 1.20436 0.95757 0.94808 0.95369 1.21884 1.00622 0.95779 1.01381 1.22958 1.02136 1.00647 0.96554 1.21709 1.00816 0.93475 0.97201 1.20844 0.94909 0.93325 0.88397 1.23540 1.00060 1.01006 1.01348 1.22636 0.95774 1.02512 1.00612 1.60786 1.30020 1.09649 1.30462 1.21612 0.96735 0.85061 0.98376 1.21868 0.95882 0.97864 1.00471 1.21582 1.00364 0.92170 1.00182 1.18638 0.88885 0.94412 0.94943 1.21250 1.04803 0.92888 1.36155 0.92977 1.24962 0.96206 0.97577 0.95259 1.69890 1.10353 1.34717 1.37877 0.86675 0.77201 0.86226 0.78362 1.20815 1.21308 1.20053 1.21605 1.03669 0.90650 0.98864 1.21730 0.94402 0.98085 0.99921 0.92957 0.93527 0.89447 0.92990 0.93021 0.92842 0.90529 0.93969 0.91401 0.91145 0.92567 0.93063 0.90271 0.92523 0.91712 0.91255 0.91564 0.84932 0.93233 0.92059 0.94203 0.93603 0.93706 0.95756 0.93161 0.95313 0.89140 0.92776 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 7.76 37.16 0.29 -1.33 16 2 C -0.06 -0.59 0.77 -154.51 -0.12 -0.70 16 3 C -0.14 -1.17 8.35 37.16 0.31 -0.86 16 4 C -0.17 -1.49 6.48 37.16 0.24 -1.25 16 5 C -0.09 -1.00 4.09 -26.73 -0.11 -1.11 16 6 C 0.12 1.39 0.69 -131.60 -0.09 1.30 16 7 C -0.20 -2.26 6.93 37.16 0.26 -2.00 16 8 C -0.16 -1.99 5.40 37.16 0.20 -1.79 16 9 N -0.68 -9.64 5.98 -93.05 -0.56 -10.19 16 10 C 0.09 1.52 1.35 -67.71 -0.09 1.43 16 11 C -0.12 -2.15 5.05 -26.74 -0.14 -2.28 16 12 C -0.10 -2.19 5.14 -26.73 -0.14 -2.33 16 13 C 0.05 1.24 2.10 -91.77 -0.19 1.04 16 14 C -0.51 -14.21 8.56 -34.44 -0.29 -14.51 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -25.62 11.33 55.43 0.63 -24.99 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.11 -2.58 4.98 -26.75 -0.13 -2.71 16 23 C -0.10 -2.03 5.09 -26.75 -0.14 -2.16 16 24 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.86 3.52 -51.93 -0.18 0.68 16 27 H 0.05 0.42 8.13 -51.92 -0.42 0.00 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.44 8.14 -51.94 -0.42 0.02 16 30 H 0.08 0.72 3.41 -51.93 -0.18 0.54 16 31 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.07 0.60 5.34 -51.93 -0.28 0.33 16 33 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16 34 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 35 H 0.05 0.66 6.35 -51.93 -0.33 0.33 16 36 H 0.08 0.82 4.62 -51.93 -0.24 0.58 16 37 H 0.06 0.58 6.28 -51.93 -0.33 0.25 16 38 H 0.06 0.84 7.15 -51.93 -0.37 0.47 16 39 H 0.07 0.75 3.76 -51.93 -0.20 0.55 16 40 H 0.07 0.97 4.99 -51.93 -0.26 0.71 16 41 H 0.33 4.43 8.16 -39.29 -0.32 4.11 16 42 H 0.05 0.86 5.40 -51.93 -0.28 0.58 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 2.42 6.08 -51.93 -0.32 2.10 16 51 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 52 H 0.05 0.86 5.97 -51.93 -0.31 0.55 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -27.56 354.80 -9.27 -36.83 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -9.44 Total: 4.22 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: -0.24 Total: -27.67 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.07 Total: -35.19 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.56 -9.27 -36.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.660 kcal (2) G-P(sol) polarization free energy of solvation -27.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds