Wall clock time and date at job start Tue Mar 31 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 C 1.52994 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46674 * 174.97968 * 4 3 2 6 6 C 1.53037 * 109.46317 * 54.99480 * 4 3 2 7 7 C 1.53126 * 109.27880 * 180.81121 * 6 4 3 8 8 C 1.53114 * 109.16239 * 57.65311 * 7 6 4 9 9 C 1.53037 * 109.31211 * 302.32855 * 8 7 6 10 10 N 1.46850 * 109.46012 * 294.94644 * 4 3 2 11 11 C 1.46900 * 110.99740 * 305.85077 * 10 4 3 12 12 C 1.53002 * 109.47188 * 300.00202 * 11 10 4 13 13 C 1.53010 * 109.46864 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46895 * 60.00327 * 13 12 11 15 15 C 1.50698 * 109.47484 * 59.99580 * 14 13 12 16 16 H 1.07997 * 120.00464 * 239.99795 * 15 14 13 17 17 C 1.37881 * 119.99624 * 59.99829 * 15 14 13 18 18 N 1.31516 * 120.00191 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99749 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46970 * 60.00029 * 19 17 15 21 21 H 1.48496 * 109.46986 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46858 * 300.00169 * 19 17 15 23 23 C 1.53002 * 109.47097 * 299.99530 * 14 13 12 24 24 C 1.52997 * 109.47143 * 180.02562 * 11 10 4 25 25 H 1.08998 * 109.47032 * 60.00251 * 1 2 3 26 26 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47213 * 299.99879 * 1 2 3 28 28 H 1.09001 * 109.47217 * 59.99618 * 3 2 1 29 29 H 1.09000 * 109.47130 * 299.99905 * 3 2 1 30 30 H 1.08997 * 109.50150 * 60.86892 * 6 4 3 31 31 H 1.08997 * 109.53578 * 300.76515 * 6 4 3 32 32 H 1.09006 * 109.51941 * 297.74603 * 7 6 4 33 33 H 1.09002 * 109.52329 * 177.56472 * 7 6 4 34 34 H 1.09002 * 109.50377 * 62.28979 * 8 7 6 35 35 H 1.09003 * 109.50316 * 182.36975 * 8 7 6 36 36 H 1.08994 * 109.46612 * 179.21753 * 9 8 7 37 37 H 1.09007 * 109.46083 * 299.18512 * 9 8 7 38 38 H 1.09001 * 109.47132 * 60.00369 * 11 10 4 39 39 H 1.09001 * 109.47267 * 299.99557 * 12 11 10 40 40 H 1.09000 * 109.46731 * 60.00385 * 12 11 10 41 41 H 1.09001 * 109.46974 * 299.99929 * 13 12 11 42 42 H 1.08994 * 109.46615 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.46665 * 179.97438 * 14 13 12 44 44 H 0.96992 * 120.00071 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.47267 * 300.00702 * 23 14 13 46 46 H 1.08998 * 109.47275 * 180.02562 * 23 14 13 47 47 H 1.09004 * 109.47318 * 300.00139 * 24 11 10 48 48 H 1.09001 * 109.47341 * 60.00425 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9783 2.1766 -0.0906 6 6 3.9779 0.3195 -1.1829 7 6 5.5032 0.1848 -1.1678 8 6 5.9411 -0.4195 0.1691 9 6 5.4425 0.4667 1.3128 10 7 3.9776 0.5637 1.2545 11 6 3.4520 1.2930 2.4163 12 6 3.9531 2.7382 2.3808 13 6 3.4051 3.4979 3.5906 14 6 3.8856 2.8230 4.8769 15 6 5.3920 2.8334 4.9174 16 1 5.9374 1.9024 4.9638 17 6 6.0739 4.0316 4.8951 18 7 5.4097 5.1653 4.8390 19 14 7.9412 4.0445 4.9459 20 1 8.4734 3.3068 3.7721 21 1 8.4276 5.4471 4.9119 22 1 8.4069 3.3897 6.1948 23 6 3.3844 1.3778 4.9125 24 6 3.9333 0.6183 3.7024 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.6632 0.7887 -2.1150 31 1 3.5246 -0.6684 -1.1014 32 1 5.9569 1.1685 -1.2890 33 1 5.8195 -0.4661 -1.9829 34 1 5.5187 -1.4190 0.2725 35 1 7.0290 -0.4790 0.2027 36 1 5.7410 0.0314 2.2664 37 1 5.8763 1.4622 1.2165 38 1 2.3624 1.2855 2.3876 39 1 5.0427 2.7457 2.4096 40 1 3.6105 3.2190 1.4645 41 1 2.3156 3.4903 3.5613 42 1 3.7626 4.5273 3.5655 43 1 3.4955 3.3645 5.7388 44 1 5.8895 6.0081 4.8230 45 1 2.2948 1.3703 4.8832 46 1 3.7263 0.8972 5.8291 47 1 3.5766 -0.4114 3.7280 48 1 5.0229 0.6263 3.7310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:02 Heat of formation + Delta-G solvation = -61.430795 kcal Electronic energy + Delta-G solvation = -24670.739471 eV Core-core repulsion = 21531.667427 eV Total energy + Delta-G solvation = -3139.072043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.84838 -37.46448 -36.58609 -33.38839 -31.91679 -31.38183 -29.49130 -28.08905 -27.04670 -25.45017 -24.71353 -23.66327 -21.88564 -21.08382 -20.35169 -19.15196 -18.19080 -16.33996 -15.99361 -15.79020 -15.47474 -14.82423 -14.62572 -14.28288 -13.98131 -13.79437 -13.50120 -13.17862 -13.02222 -12.82382 -12.53333 -11.97714 -11.88700 -11.65179 -11.40697 -11.19973 -11.12845 -10.97906 -10.84009 -10.80789 -10.64053 -10.49816 -10.40385 -10.18818 -9.87510 -9.72430 -9.64680 -9.36781 -9.10445 -8.87694 -8.60645 -8.26151 -7.54078 -5.94023 -3.98037 3.31541 3.36878 3.39471 3.94767 4.32452 4.46001 4.96805 4.98435 5.15551 5.30379 5.36191 5.36753 5.42430 5.51581 5.56464 5.64468 5.70105 5.70979 5.77976 5.89271 5.91412 6.02409 6.07416 6.14211 6.15579 6.22793 6.39228 6.40870 6.43305 6.51277 6.59755 6.60670 6.67890 6.81288 6.82411 6.92816 7.16053 7.22535 7.31443 7.45101 7.55798 7.67804 7.74513 7.80185 7.99407 8.19231 8.52713 9.04251 9.64739 11.11754 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.006157 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.555794 B = 4546.627655 C = 5335.401535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.066 3.934 4 C 0.087 3.913 5 H 0.054 0.946 6 C -0.105 4.105 7 C -0.121 4.121 8 C -0.116 4.116 9 C 0.050 3.950 10 N -0.519 5.519 11 C 0.089 3.911 12 C -0.131 4.131 13 C -0.103 4.103 14 C 0.044 3.956 15 C -0.498 4.498 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.882 3.118 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.106 4.106 24 C -0.098 4.098 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.028 0.972 41 H 0.011 0.989 42 H 0.089 0.911 43 H 0.023 0.977 44 H 0.258 0.742 45 H 0.032 0.968 46 H 0.046 0.954 47 H 0.043 0.957 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 -8.315 -11.257 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.011 4.011 4 C -0.022 4.022 5 H 0.072 0.928 6 C -0.143 4.143 7 C -0.158 4.158 8 C -0.153 4.153 9 C -0.078 4.078 10 N -0.243 5.243 11 C -0.018 4.018 12 C -0.169 4.169 13 C -0.142 4.142 14 C 0.025 3.975 15 C -0.536 4.536 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.710 3.290 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.144 4.144 24 C -0.135 4.135 25 H 0.052 0.948 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.107 0.893 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.391 -8.773 -11.257 15.256 hybrid contribution 1.148 1.320 -0.017 1.750 sum -4.243 -7.453 -11.274 14.165 Atomic orbital electron populations 1.22696 0.82262 1.02233 0.99481 1.87985 1.18326 1.27311 1.95205 1.22669 0.93566 0.84987 0.99915 1.21622 0.92523 0.96646 0.91397 0.92792 1.21500 0.95333 1.01346 0.96082 1.21583 0.96153 1.00556 0.97528 1.21590 0.99560 0.99863 0.94332 1.22157 0.87981 0.98651 0.99027 1.62242 1.09477 1.51568 1.00981 1.21757 0.98393 0.92211 0.89464 1.22014 1.02442 0.95028 0.97464 1.21445 0.94918 1.02530 0.95273 1.18684 0.95444 0.89598 0.93746 1.21103 0.91243 0.91934 1.49311 0.92836 1.24927 0.97595 0.95826 0.95584 1.69858 1.34861 0.97195 1.51233 0.86824 0.86749 0.76845 0.78588 1.20403 1.21476 1.20371 1.21555 0.97406 0.99108 0.96358 1.21494 1.01586 0.97011 0.93440 0.94783 0.90031 0.94334 0.92509 0.93785 0.92539 0.90357 0.92600 0.92378 0.91434 0.92198 0.89997 0.94480 0.91287 0.90845 0.95330 0.97046 0.89318 0.95933 0.93194 0.94952 0.93528 0.93806 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.33 9.76 -35.23 -0.34 -5.68 16 3 C 0.07 0.92 5.19 37.15 0.19 1.12 16 4 C 0.09 1.30 1.66 -67.72 -0.11 1.19 16 5 H 0.05 0.86 6.63 -51.93 -0.34 0.52 16 6 C -0.10 -1.37 5.19 -26.65 -0.14 -1.51 16 7 C -0.12 -1.51 6.00 -26.61 -0.16 -1.67 16 8 C -0.12 -1.57 6.09 -26.65 -0.16 -1.74 16 9 C 0.05 0.82 4.68 -3.79 -0.02 0.80 16 10 N -0.52 -8.64 4.47 -218.69 -0.98 -9.62 16 11 C 0.09 1.65 1.77 -67.71 -0.12 1.53 16 12 C -0.13 -2.70 4.28 -26.72 -0.11 -2.81 16 13 C -0.10 -2.39 5.24 -26.73 -0.14 -2.53 16 14 C 0.04 1.07 2.59 -91.77 -0.24 0.83 16 15 C -0.50 -13.08 6.61 -34.44 -0.23 -13.31 16 16 H 0.05 1.40 6.71 -52.49 -0.35 1.05 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 19 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 C -0.11 -2.22 5.42 -26.70 -0.14 -2.36 16 24 C -0.10 -1.89 4.62 -26.71 -0.12 -2.02 16 25 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.06 0.86 6.02 -51.93 -0.31 0.55 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.11 7.54 -51.93 -0.39 0.72 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.42 5.91 -51.93 -0.31 1.11 16 37 H 0.04 0.67 6.71 -51.92 -0.35 0.32 16 38 H 0.07 1.29 6.10 -51.93 -0.32 0.98 16 39 H 0.07 1.70 5.71 -51.93 -0.30 1.40 16 40 H 0.03 0.55 6.54 -51.93 -0.34 0.21 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.47 4.69 -51.93 -0.24 1.23 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -27.51 342.95 -9.65 -37.16 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.62 Total: 0.90 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -0.49 Total: -19.49 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: -0.35 Total: -34.12 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.34 Total: -5.68 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.51 -9.65 -37.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.267 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds