Wall clock time and date at job start Tue Mar 31 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 C 1.52994 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46674 * 174.97968 * 4 3 2 6 6 C 1.53037 * 109.46317 * 54.99480 * 4 3 2 7 7 C 1.53126 * 109.27880 * 180.81121 * 6 4 3 8 8 C 1.53114 * 109.16239 * 57.65311 * 7 6 4 9 9 C 1.53037 * 109.31211 * 302.32855 * 8 7 6 10 10 N 1.46850 * 109.46012 * 294.94644 * 4 3 2 11 11 C 1.46900 * 110.99740 * 305.85077 * 10 4 3 12 12 C 1.53002 * 109.47188 * 300.00202 * 11 10 4 13 13 C 1.53010 * 109.46864 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46895 * 60.00327 * 13 12 11 15 15 C 1.50698 * 109.47484 * 59.99580 * 14 13 12 16 16 H 1.07997 * 120.00464 * 239.99795 * 15 14 13 17 17 C 1.37881 * 119.99624 * 59.99829 * 15 14 13 18 18 N 1.31516 * 120.00191 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99749 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46970 * 60.00029 * 19 17 15 21 21 H 1.48496 * 109.46986 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46858 * 300.00169 * 19 17 15 23 23 C 1.53002 * 109.47097 * 299.99530 * 14 13 12 24 24 C 1.52997 * 109.47143 * 180.02562 * 11 10 4 25 25 H 1.08998 * 109.47032 * 60.00251 * 1 2 3 26 26 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47213 * 299.99879 * 1 2 3 28 28 H 1.09001 * 109.47217 * 59.99618 * 3 2 1 29 29 H 1.09000 * 109.47130 * 299.99905 * 3 2 1 30 30 H 1.08997 * 109.50150 * 60.86892 * 6 4 3 31 31 H 1.08997 * 109.53578 * 300.76515 * 6 4 3 32 32 H 1.09006 * 109.51941 * 297.74603 * 7 6 4 33 33 H 1.09002 * 109.52329 * 177.56472 * 7 6 4 34 34 H 1.09002 * 109.50377 * 62.28979 * 8 7 6 35 35 H 1.09003 * 109.50316 * 182.36975 * 8 7 6 36 36 H 1.08994 * 109.46612 * 179.21753 * 9 8 7 37 37 H 1.09007 * 109.46083 * 299.18512 * 9 8 7 38 38 H 1.09001 * 109.47132 * 60.00369 * 11 10 4 39 39 H 1.09001 * 109.47267 * 299.99557 * 12 11 10 40 40 H 1.09000 * 109.46731 * 60.00385 * 12 11 10 41 41 H 1.09001 * 109.46974 * 299.99929 * 13 12 11 42 42 H 1.08994 * 109.46615 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.46665 * 179.97438 * 14 13 12 44 44 H 0.96992 * 120.00071 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.47267 * 300.00702 * 23 14 13 46 46 H 1.08998 * 109.47275 * 180.02562 * 23 14 13 47 47 H 1.09004 * 109.47318 * 300.00139 * 24 11 10 48 48 H 1.09001 * 109.47341 * 60.00425 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9783 2.1766 -0.0906 6 6 3.9779 0.3195 -1.1829 7 6 5.5032 0.1848 -1.1678 8 6 5.9411 -0.4195 0.1691 9 6 5.4425 0.4667 1.3128 10 7 3.9776 0.5637 1.2545 11 6 3.4520 1.2930 2.4163 12 6 3.9531 2.7382 2.3808 13 6 3.4051 3.4979 3.5906 14 6 3.8856 2.8230 4.8769 15 6 5.3920 2.8334 4.9174 16 1 5.9374 1.9024 4.9638 17 6 6.0739 4.0316 4.8951 18 7 5.4097 5.1653 4.8390 19 14 7.9412 4.0445 4.9459 20 1 8.4734 3.3068 3.7721 21 1 8.4276 5.4471 4.9119 22 1 8.4069 3.3897 6.1948 23 6 3.3844 1.3778 4.9125 24 6 3.9333 0.6183 3.7024 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.6632 0.7887 -2.1150 31 1 3.5246 -0.6684 -1.1014 32 1 5.9569 1.1685 -1.2890 33 1 5.8195 -0.4661 -1.9829 34 1 5.5187 -1.4190 0.2725 35 1 7.0290 -0.4790 0.2027 36 1 5.7410 0.0314 2.2664 37 1 5.8763 1.4622 1.2165 38 1 2.3624 1.2855 2.3876 39 1 5.0427 2.7457 2.4096 40 1 3.6105 3.2190 1.4645 41 1 2.3156 3.4903 3.5613 42 1 3.7626 4.5273 3.5655 43 1 3.4955 3.3645 5.7388 44 1 5.8895 6.0081 4.8230 45 1 2.2948 1.3703 4.8832 46 1 3.7263 0.8972 5.8291 47 1 3.5766 -0.4114 3.7280 48 1 5.0229 0.6263 3.7310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:02 Heat of formation + Delta-G solvation = -76.625541 kcal Electronic energy + Delta-G solvation = -24671.398364 eV Core-core repulsion = 21531.667427 eV Total energy + Delta-G solvation = -3139.730937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20289 -38.79511 -37.88179 -35.00039 -33.51272 -32.71886 -31.21867 -29.69822 -28.07918 -26.78014 -26.34584 -24.99638 -23.47022 -22.46052 -21.75868 -20.70160 -19.73059 -17.75997 -17.46515 -16.99310 -16.90353 -16.55722 -15.91572 -15.54854 -15.45711 -15.10626 -14.86342 -14.59367 -14.54750 -14.28364 -13.93536 -13.50246 -13.12709 -13.01003 -12.85380 -12.80245 -12.73961 -12.54390 -12.47697 -12.29986 -12.10182 -11.94678 -11.79876 -11.56975 -11.50880 -11.20947 -10.99155 -10.83032 -10.70662 -10.51328 -10.40788 -10.30018 -8.96666 -8.03091 -6.12721 1.39499 1.40257 1.46722 2.44387 2.90683 3.07887 3.24927 3.86486 3.88623 3.98757 4.11098 4.23279 4.30587 4.39487 4.42159 4.45252 4.50260 4.59223 4.63322 4.69038 4.69852 4.72778 4.78377 4.86063 4.87745 4.91693 4.96849 5.00373 5.03010 5.06656 5.13839 5.17142 5.23143 5.32421 5.36845 5.42907 5.53432 5.58874 5.64715 5.69781 5.73249 5.94308 6.22011 6.27987 6.32240 6.45678 6.47229 6.96557 7.52675 9.01366 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.006157 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.555794 B = 4546.627655 C = 5335.401535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.069 3.931 4 C 0.081 3.919 5 H 0.043 0.957 6 C -0.097 4.097 7 C -0.118 4.118 8 C -0.110 4.110 9 C 0.049 3.951 10 N -0.515 5.515 11 C 0.101 3.899 12 C -0.115 4.115 13 C -0.098 4.098 14 C 0.039 3.961 15 C -0.501 4.501 16 H 0.051 0.949 17 C 0.015 3.985 18 N -0.919 5.919 19 Si 0.937 3.063 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.273 1.273 23 C -0.100 4.100 24 C -0.090 4.090 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.038 0.962 41 H 0.024 0.976 42 H 0.055 0.945 43 H -0.012 1.012 44 H 0.256 0.744 45 H 0.048 0.952 46 H 0.046 0.954 47 H 0.060 0.940 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 -9.959 -13.024 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.308 6.308 3 C -0.008 4.008 4 C -0.028 4.028 5 H 0.060 0.940 6 C -0.135 4.135 7 C -0.156 4.156 8 C -0.148 4.148 9 C -0.079 4.079 10 N -0.239 5.239 11 C -0.007 4.007 12 C -0.154 4.154 13 C -0.137 4.137 14 C 0.021 3.979 15 C -0.539 4.539 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.560 5.560 19 Si 0.763 3.237 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.199 1.199 23 C -0.138 4.138 24 C -0.128 4.128 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.033 0.967 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.006 0.994 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.572 -10.433 -13.028 17.596 hybrid contribution 1.143 1.840 0.553 2.236 sum -4.429 -8.593 -12.475 15.782 Atomic orbital electron populations 1.22875 0.80567 1.03473 1.00201 1.87946 1.20209 1.27252 1.95346 1.22602 0.92824 0.85190 1.00221 1.21754 0.93402 0.96395 0.91201 0.93966 1.21455 0.95608 1.00625 0.95826 1.21588 0.95732 1.00800 0.97478 1.21559 1.00238 0.99229 0.93760 1.22165 0.87837 0.98020 0.99845 1.62288 1.09512 1.50993 1.01096 1.21564 0.98468 0.90584 0.90130 1.21826 1.00438 0.96590 0.96589 1.21303 0.95598 1.00853 0.95937 1.18681 0.94656 0.91685 0.92919 1.21329 0.92344 0.91744 1.48492 0.93053 1.25588 1.01431 0.95645 0.95609 1.70004 1.36176 0.97525 1.52301 0.85937 0.82233 0.76730 0.78762 1.19783 1.21483 1.19861 1.21460 0.98342 0.96765 0.97273 1.21402 1.00542 0.97710 0.93155 0.93142 0.88605 0.94509 0.93959 0.91735 0.90677 0.90943 0.92957 0.90079 0.91122 0.91060 0.91255 0.96680 0.90866 0.93611 0.94321 0.95775 0.92660 0.99417 0.93476 0.93373 0.93492 0.92102 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.39 -10.26 9.76 -148.98 -1.45 -11.72 16 3 C 0.07 1.79 5.19 71.98 0.37 2.16 16 4 C 0.08 2.29 1.66 44.94 0.07 2.36 16 5 H 0.04 1.30 6.63 -2.39 -0.02 1.29 16 6 C -0.10 -2.29 5.19 30.65 0.16 -2.13 16 7 C -0.12 -2.65 6.00 30.67 0.18 -2.47 16 8 C -0.11 -2.78 6.09 30.64 0.19 -2.60 16 9 C 0.05 1.59 4.68 86.31 0.40 1.99 16 10 N -0.52 -16.57 4.47 -845.81 -3.78 -20.34 16 11 C 0.10 3.64 1.77 44.91 0.08 3.72 16 12 C -0.12 -4.81 4.28 30.60 0.13 -4.68 16 13 C -0.10 -4.66 5.24 30.60 0.16 -4.50 16 14 C 0.04 1.95 2.59 -11.54 -0.03 1.92 16 15 C -0.50 -26.88 6.61 25.60 0.17 -26.71 16 16 H 0.05 2.73 6.71 -2.91 -0.02 2.71 16 17 C 0.01 0.82 5.30 84.66 0.45 1.27 16 18 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 19 Si 0.94 43.80 29.54 68.60 2.03 45.83 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.10 -4.16 5.42 30.61 0.17 -3.99 16 24 C -0.09 -3.44 4.62 30.61 0.14 -3.30 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.04 1.22 6.02 -2.39 -0.01 1.20 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.83 7.54 -2.39 -0.02 1.81 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.38 5.91 -2.39 -0.01 2.37 16 37 H 0.01 0.55 6.71 -2.38 -0.02 0.53 16 38 H 0.07 2.64 6.10 -2.39 -0.01 2.62 16 39 H 0.05 2.16 5.71 -2.39 -0.01 2.15 16 40 H 0.04 1.50 6.54 -2.39 -0.02 1.49 16 41 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 3.00 6.07 -2.39 -0.01 2.99 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 48 H 0.06 2.30 4.69 -2.39 -0.01 2.29 16 Total: -1.00 -59.53 342.95 1.84 -57.68 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.91 Total: 16.82 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 3.90 Total: -35.19 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -3.53 Total: -73.42 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.45 Total: -11.72 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -59.53 1.84 -57.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.943 kcal (2) G-P(sol) polarization free energy of solvation -59.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds