Wall clock time and date at job start Tue Mar 31 2020 05:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00136 * 2 1 4 4 C 1.53002 * 109.47225 * 180.02562 * 3 2 1 5 5 C 1.53119 * 109.52301 * 174.99822 * 4 3 2 6 6 C 1.53035 * 109.27828 * 177.62147 * 5 4 3 7 7 N 1.46842 * 109.51643 * 300.82868 * 6 5 4 8 8 C 1.46898 * 111.00039 * 185.83453 * 7 6 5 9 9 C 1.53000 * 109.47024 * 294.99815 * 8 7 6 10 10 C 1.53003 * 109.47217 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47145 * 59.99715 * 10 9 8 12 12 C 1.50704 * 109.47161 * 60.00505 * 11 10 9 13 13 H 1.07992 * 119.99854 * 245.42853 * 12 11 10 14 14 C 1.37882 * 119.99905 * 65.42125 * 12 11 10 15 15 N 1.31509 * 119.99994 * 9.55202 * 14 12 11 16 16 Si 1.86800 * 119.99595 * 189.55020 * 14 12 11 17 17 H 1.48499 * 109.47119 * 94.99717 * 16 14 12 18 18 H 1.48499 * 109.46515 * 214.99230 * 16 14 12 19 19 H 1.48497 * 109.47446 * 334.98741 * 16 14 12 20 20 C 1.53000 * 109.47296 * 300.00237 * 11 10 9 21 21 C 1.52993 * 109.46997 * 60.00089 * 20 11 10 22 22 C 1.46826 * 111.21241 * 61.74801 * 7 6 5 23 23 C 1.53040 * 109.51598 * 298.25139 * 22 7 6 24 24 H 1.09002 * 109.47142 * 59.99820 * 1 2 3 25 25 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47200 * 300.00064 * 1 2 3 27 27 H 1.09001 * 109.46890 * 59.99695 * 3 2 1 28 28 H 1.09003 * 109.46813 * 299.99881 * 3 2 1 29 29 H 1.09000 * 109.52146 * 54.87279 * 4 3 2 30 30 H 1.09003 * 109.49855 * 57.68429 * 5 4 3 31 31 H 1.09005 * 109.53649 * 297.58554 * 5 4 3 32 32 H 1.09004 * 109.45902 * 60.83789 * 6 5 4 33 33 H 1.08997 * 109.46064 * 180.81602 * 6 5 4 34 34 H 1.09001 * 109.47301 * 54.99831 * 8 7 6 35 35 H 1.09001 * 109.47094 * 300.00142 * 9 8 7 36 36 H 1.08997 * 109.47142 * 60.00082 * 9 8 7 37 37 H 1.09001 * 109.46965 * 299.99928 * 10 9 8 38 38 H 1.08999 * 109.47227 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.46844 * 180.02562 * 11 10 9 40 40 H 0.97003 * 119.99708 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.47094 * 299.99959 * 20 11 10 42 42 H 1.09003 * 109.46512 * 180.02562 * 20 11 10 43 43 H 1.08999 * 109.47350 * 179.97438 * 21 20 11 44 44 H 1.09001 * 109.47305 * 59.99999 * 21 20 11 45 45 H 1.08994 * 109.47014 * 178.23696 * 22 7 6 46 46 H 1.08998 * 109.45593 * 58.25610 * 22 7 6 47 47 H 1.09001 * 109.50600 * 299.23842 * 23 22 7 48 48 H 1.09000 * 109.50258 * 179.11744 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1591 2.5774 -0.1265 6 6 5.6834 2.4558 -0.0669 7 7 6.0768 1.8366 1.2052 8 6 7.5378 1.8296 1.3577 9 6 8.1583 0.9337 0.2838 10 6 9.6800 0.9259 0.4430 11 6 10.0451 0.3890 1.8284 12 6 9.5172 -1.0145 1.9784 13 1 8.7453 -1.2264 2.7034 14 6 10.0195 -2.0280 1.1900 15 7 11.0818 -1.8159 0.4444 16 14 9.1911 -3.7022 1.1811 17 1 8.2344 -3.7751 0.0477 18 1 10.2197 -4.7625 1.0295 19 1 8.4610 -3.9001 2.4589 20 6 9.4246 1.2849 2.9023 21 6 7.9030 1.2927 2.7431 22 6 5.5288 0.4800 1.3275 23 6 3.9998 0.5426 1.3096 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8516 0.5668 -0.8411 30 1 3.8119 3.2069 0.6929 31 1 3.8664 3.0233 -1.0771 32 1 6.0310 1.8375 -0.8946 33 1 6.1300 3.4473 -0.1416 34 1 7.9194 2.8448 1.2489 35 1 7.7767 -0.0815 0.3926 36 1 7.8979 1.3160 -0.7032 37 1 10.0619 1.9410 0.3345 38 1 10.1221 0.2880 -0.3224 39 1 11.1292 0.3839 1.9419 40 1 11.4354 -2.5291 -0.1100 41 1 9.8065 2.3000 2.7938 42 1 9.6851 0.9026 3.8893 43 1 7.4608 1.9305 3.5084 44 1 7.5211 0.2775 2.8516 45 1 5.8631 0.0363 2.2653 46 1 5.8771 -0.1289 0.4932 47 1 3.6501 1.1401 2.1515 48 1 3.5934 -0.4660 1.3846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:18 Heat of formation + Delta-G solvation = -70.866210 kcal Electronic energy + Delta-G solvation = -23803.469409 eV Core-core repulsion = 20663.988216 eV Total energy + Delta-G solvation = -3139.481194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.63757 -38.13991 -36.63999 -33.71848 -31.89933 -30.70621 -29.55795 -28.93705 -27.13401 -25.60926 -24.46124 -23.10856 -22.32254 -21.41504 -20.33290 -19.35197 -18.32559 -16.44569 -15.99750 -15.92156 -15.62460 -15.08017 -14.74153 -14.42051 -13.97176 -13.82221 -13.77104 -13.35195 -12.88212 -12.69793 -12.57848 -12.32254 -11.99686 -11.66024 -11.56777 -11.42001 -11.12965 -11.05945 -10.93754 -10.83184 -10.60762 -10.50495 -10.40375 -10.26199 -10.05123 -9.86488 -9.75545 -9.64467 -9.09975 -8.86985 -8.62561 -8.23123 -7.65714 -5.96167 -3.95026 3.32393 3.40485 3.43091 3.62300 4.33263 4.48710 4.78465 4.83797 4.97203 5.11453 5.14474 5.29473 5.35454 5.37588 5.43499 5.44731 5.60719 5.62745 5.68220 5.76667 5.80530 5.96572 6.01261 6.05415 6.14666 6.17285 6.32660 6.33716 6.37826 6.46764 6.53614 6.56424 6.61193 6.75044 6.79088 6.92215 7.03050 7.13943 7.17762 7.37637 7.49682 7.62286 7.67144 7.80291 7.98473 8.09119 8.53766 9.07807 9.66811 11.13396 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.004919 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.001634 B = 5690.582399 C = 6656.769786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.068 3.932 4 C -0.088 4.088 5 C -0.106 4.106 6 C 0.055 3.945 7 N -0.534 5.534 8 C 0.092 3.908 9 C -0.133 4.133 10 C -0.097 4.097 11 C 0.042 3.958 12 C -0.501 4.501 13 H 0.055 0.945 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.876 3.124 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.106 4.106 21 C -0.098 4.098 22 C 0.049 3.951 23 C -0.105 4.105 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.017 0.983 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.258 0.742 41 H 0.032 0.968 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.039 0.961 47 H 0.064 0.936 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.691 8.184 -1.348 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.009 4.009 4 C -0.107 4.107 5 C -0.144 4.144 6 C -0.073 4.073 7 N -0.257 5.257 8 C -0.016 4.016 9 C -0.172 4.172 10 C -0.136 4.136 11 C 0.024 3.976 12 C -0.539 4.539 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.705 3.295 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.079 4.079 23 C -0.143 4.143 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.669 8.216 -1.087 18.616 hybrid contribution -0.313 -1.268 -0.903 1.588 sum -16.982 6.948 -1.990 18.456 Atomic orbital electron populations 1.22712 0.81473 1.02588 0.99703 1.87912 1.19265 1.28245 1.95341 1.22621 0.94106 0.84368 0.99760 1.21212 0.92129 0.97570 0.99743 1.21550 0.95512 0.95846 1.01510 1.21993 0.94527 0.99347 0.91447 1.62258 1.11408 1.19719 1.32335 1.21692 0.84776 0.98604 0.96501 1.22026 0.98599 1.00668 0.95867 1.21376 0.93097 0.97130 1.01962 1.18695 0.96134 0.93241 0.89568 1.21132 1.20570 0.92560 1.19668 0.92671 1.24921 0.94566 0.98101 0.96126 1.69963 1.21327 1.32995 1.28595 0.86820 0.79526 0.84788 0.78402 1.20844 1.21423 1.19861 1.21541 0.94465 0.98226 1.00172 1.21480 0.96795 1.00945 0.94374 1.22145 0.93689 0.89919 1.02109 1.21586 0.95477 1.00834 0.96411 0.94358 0.89786 0.94223 0.93317 0.93679 0.90708 0.91201 0.91971 0.94600 0.91140 0.91521 0.90767 0.95051 0.96443 0.91238 0.95187 0.93249 0.94888 0.93378 0.93805 0.91080 0.89996 0.94275 0.91695 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.73 10.30 -35.23 -0.36 -5.09 16 3 C 0.07 0.73 5.33 37.16 0.20 0.93 16 4 C -0.09 -1.08 2.49 -90.50 -0.23 -1.31 16 5 C -0.11 -1.22 5.38 -26.65 -0.14 -1.36 16 6 C 0.06 0.77 5.02 -3.84 -0.02 0.75 16 7 N -0.53 -8.51 4.64 -226.72 -1.05 -9.56 16 8 C 0.09 1.66 2.23 -67.71 -0.15 1.50 16 9 C -0.13 -2.72 4.29 -26.73 -0.11 -2.83 16 10 C -0.10 -2.24 5.29 -26.73 -0.14 -2.38 16 11 C 0.04 1.03 2.45 -91.77 -0.22 0.80 16 12 C -0.50 -13.29 6.63 -34.44 -0.23 -13.52 16 13 H 0.06 1.46 6.53 -52.49 -0.34 1.12 16 14 C 0.06 1.75 5.20 -17.82 -0.09 1.66 16 15 N -0.89 -25.57 12.16 55.43 0.67 -24.90 16 16 Si 0.88 21.34 29.55 -169.99 -5.02 16.32 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.11 -2.19 5.42 -26.73 -0.14 -2.34 16 21 C -0.10 -1.86 4.78 -26.73 -0.13 -1.99 16 22 C 0.05 0.80 4.63 -3.84 -0.02 0.78 16 23 C -0.11 -1.44 5.25 -26.65 -0.14 -1.58 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.54 6.73 -51.93 -0.35 0.19 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 35 H 0.07 1.69 5.59 -51.93 -0.29 1.40 16 36 H 0.03 0.60 6.65 -51.93 -0.35 0.26 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 1.81 6.91 -51.93 -0.36 1.45 16 39 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.46 4.67 -51.93 -0.24 1.21 16 45 H 0.08 1.42 6.03 -51.93 -0.31 1.10 16 46 H 0.04 0.70 6.62 -51.93 -0.34 0.36 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -28.15 349.43 -9.85 -38.00 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.89 Total: -0.52 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.46 Total: -19.51 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: -0.38 Total: -34.46 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.36 Total: -5.09 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.15 -9.85 -38.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.870 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds