Wall clock time and date at job start Tue Mar 31 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00136 * 2 1 4 4 C 1.53002 * 109.47225 * 180.02562 * 3 2 1 5 5 C 1.53119 * 109.52301 * 174.99822 * 4 3 2 6 6 C 1.53035 * 109.27828 * 177.62147 * 5 4 3 7 7 N 1.46842 * 109.51643 * 300.82868 * 6 5 4 8 8 C 1.46898 * 111.00039 * 185.83453 * 7 6 5 9 9 C 1.53000 * 109.47024 * 294.99815 * 8 7 6 10 10 C 1.53003 * 109.47217 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47145 * 59.99715 * 10 9 8 12 12 C 1.50704 * 109.47161 * 60.00505 * 11 10 9 13 13 H 1.07992 * 119.99854 * 245.42853 * 12 11 10 14 14 C 1.37882 * 119.99905 * 65.42125 * 12 11 10 15 15 N 1.31509 * 119.99994 * 9.55202 * 14 12 11 16 16 Si 1.86800 * 119.99595 * 189.55020 * 14 12 11 17 17 H 1.48499 * 109.47119 * 94.99717 * 16 14 12 18 18 H 1.48499 * 109.46515 * 214.99230 * 16 14 12 19 19 H 1.48497 * 109.47446 * 334.98741 * 16 14 12 20 20 C 1.53000 * 109.47296 * 300.00237 * 11 10 9 21 21 C 1.52993 * 109.46997 * 60.00089 * 20 11 10 22 22 C 1.46826 * 111.21241 * 61.74801 * 7 6 5 23 23 C 1.53040 * 109.51598 * 298.25139 * 22 7 6 24 24 H 1.09002 * 109.47142 * 59.99820 * 1 2 3 25 25 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47200 * 300.00064 * 1 2 3 27 27 H 1.09001 * 109.46890 * 59.99695 * 3 2 1 28 28 H 1.09003 * 109.46813 * 299.99881 * 3 2 1 29 29 H 1.09000 * 109.52146 * 54.87279 * 4 3 2 30 30 H 1.09003 * 109.49855 * 57.68429 * 5 4 3 31 31 H 1.09005 * 109.53649 * 297.58554 * 5 4 3 32 32 H 1.09004 * 109.45902 * 60.83789 * 6 5 4 33 33 H 1.08997 * 109.46064 * 180.81602 * 6 5 4 34 34 H 1.09001 * 109.47301 * 54.99831 * 8 7 6 35 35 H 1.09001 * 109.47094 * 300.00142 * 9 8 7 36 36 H 1.08997 * 109.47142 * 60.00082 * 9 8 7 37 37 H 1.09001 * 109.46965 * 299.99928 * 10 9 8 38 38 H 1.08999 * 109.47227 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.46844 * 180.02562 * 11 10 9 40 40 H 0.97003 * 119.99708 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.47094 * 299.99959 * 20 11 10 42 42 H 1.09003 * 109.46512 * 180.02562 * 20 11 10 43 43 H 1.08999 * 109.47350 * 179.97438 * 21 20 11 44 44 H 1.09001 * 109.47305 * 59.99999 * 21 20 11 45 45 H 1.08994 * 109.47014 * 178.23696 * 22 7 6 46 46 H 1.08998 * 109.45593 * 58.25610 * 22 7 6 47 47 H 1.09001 * 109.50600 * 299.23842 * 23 22 7 48 48 H 1.09000 * 109.50258 * 179.11744 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1591 2.5774 -0.1265 6 6 5.6834 2.4558 -0.0669 7 7 6.0768 1.8366 1.2052 8 6 7.5378 1.8296 1.3577 9 6 8.1583 0.9337 0.2838 10 6 9.6800 0.9259 0.4430 11 6 10.0451 0.3890 1.8284 12 6 9.5172 -1.0145 1.9784 13 1 8.7453 -1.2264 2.7034 14 6 10.0195 -2.0280 1.1900 15 7 11.0818 -1.8159 0.4444 16 14 9.1911 -3.7022 1.1811 17 1 8.2344 -3.7751 0.0477 18 1 10.2197 -4.7625 1.0295 19 1 8.4610 -3.9001 2.4589 20 6 9.4246 1.2849 2.9023 21 6 7.9030 1.2927 2.7431 22 6 5.5288 0.4800 1.3275 23 6 3.9998 0.5426 1.3096 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8516 0.5668 -0.8411 30 1 3.8119 3.2069 0.6929 31 1 3.8664 3.0233 -1.0771 32 1 6.0310 1.8375 -0.8946 33 1 6.1300 3.4473 -0.1416 34 1 7.9194 2.8448 1.2489 35 1 7.7767 -0.0815 0.3926 36 1 7.8979 1.3160 -0.7032 37 1 10.0619 1.9410 0.3345 38 1 10.1221 0.2880 -0.3224 39 1 11.1292 0.3839 1.9419 40 1 11.4354 -2.5291 -0.1100 41 1 9.8065 2.3000 2.7938 42 1 9.6851 0.9026 3.8893 43 1 7.4608 1.9305 3.5084 44 1 7.5211 0.2775 2.8516 45 1 5.8631 0.0363 2.2653 46 1 5.8771 -0.1289 0.4932 47 1 3.6501 1.1401 2.1515 48 1 3.5934 -0.4660 1.3846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:17 Heat of formation + Delta-G solvation = -86.866671 kcal Electronic energy + Delta-G solvation = -23804.163241 eV Core-core repulsion = 20663.988216 eV Total energy + Delta-G solvation = -3140.175026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94348 -39.21429 -37.94498 -35.19134 -33.71804 -31.89472 -31.21364 -30.36954 -28.19617 -26.87401 -26.10252 -24.29697 -23.63633 -22.92079 -21.76217 -20.72565 -19.92970 -17.71339 -17.24692 -17.19088 -16.74194 -16.62212 -16.04273 -15.80044 -15.49421 -15.02829 -15.00463 -14.82562 -14.57549 -14.08125 -13.77117 -13.64270 -13.24990 -13.06703 -12.94734 -12.85688 -12.68752 -12.57874 -12.41316 -12.34488 -12.18753 -12.02517 -11.76076 -11.56278 -11.47800 -11.30150 -11.14544 -10.88093 -10.65752 -10.56262 -10.49116 -10.32074 -9.05370 -8.09771 -6.12967 1.34950 1.38392 1.46061 2.42734 2.87693 3.05110 3.22499 3.80809 3.86579 3.97323 4.09545 4.20016 4.35921 4.39014 4.42865 4.47349 4.49294 4.54558 4.59705 4.63285 4.72068 4.74131 4.76943 4.83352 4.86527 4.87496 4.94794 4.98048 4.99304 5.03628 5.05242 5.14021 5.21583 5.26756 5.33060 5.39041 5.50331 5.53894 5.63409 5.67156 5.71215 5.93728 6.11788 6.25885 6.31035 6.35112 6.46176 6.97799 7.51409 8.99693 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.004919 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.001634 B = 5690.582399 C = 6656.769786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.071 3.929 4 C -0.087 4.087 5 C -0.097 4.097 6 C 0.050 3.950 7 N -0.525 5.525 8 C 0.100 3.900 9 C -0.121 4.121 10 C -0.091 4.091 11 C 0.038 3.962 12 C -0.502 4.502 13 H 0.053 0.947 14 C 0.017 3.983 15 N -0.921 5.921 16 Si 0.930 3.070 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.100 4.100 21 C -0.091 4.091 22 C 0.052 3.948 23 C -0.097 4.097 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.021 0.979 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.032 0.968 39 H -0.008 1.008 40 H 0.256 0.744 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.013 0.987 47 H 0.074 0.926 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.212 9.877 -1.065 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.005 4.005 4 C -0.106 4.106 5 C -0.135 4.135 6 C -0.078 4.078 7 N -0.248 5.248 8 C -0.008 4.008 9 C -0.160 4.160 10 C -0.130 4.130 11 C 0.019 3.981 12 C -0.540 4.540 13 H 0.071 0.929 14 C -0.181 4.181 15 N -0.562 5.562 16 Si 0.757 3.243 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.138 4.138 21 C -0.129 4.129 22 C -0.076 4.076 23 C -0.135 4.135 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.039 0.961 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.010 0.990 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.031 0.969 47 H 0.092 0.908 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.211 9.912 -0.796 21.632 hybrid contribution 0.492 -1.796 -0.992 2.110 sum -18.718 8.117 -1.788 20.480 Atomic orbital electron populations 1.22888 0.79738 1.03493 1.00854 1.87869 1.21279 1.29179 1.95588 1.22598 0.92579 0.84211 1.01127 1.21183 0.93761 0.97704 0.97932 1.21503 0.93262 0.95418 1.03279 1.22149 0.96623 0.99370 0.89652 1.62304 1.09626 1.19229 1.33683 1.21570 0.86171 0.98336 0.94769 1.21878 0.96558 0.99886 0.97665 1.21238 0.94906 0.97024 0.99840 1.18686 0.94031 0.93528 0.91852 1.21399 1.19860 0.93747 1.18983 0.92910 1.25568 0.95081 1.01296 0.96175 1.70082 1.22651 1.33859 1.29605 0.85959 0.78587 0.81234 0.78514 1.20853 1.21269 1.19040 1.21444 0.95636 0.98280 0.98468 1.21386 0.95292 1.00454 0.95749 1.22090 0.95565 0.89726 1.00234 1.21495 0.93270 1.00860 0.97835 0.93090 0.89163 0.93116 0.92131 0.91997 0.92521 0.90067 0.89617 0.96112 0.89719 0.90078 0.93647 0.94002 0.94738 0.94952 0.98964 0.93458 0.92873 0.93593 0.91471 0.93020 0.91485 0.96850 0.90761 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.43 10.30 -148.98 -1.54 -10.96 16 3 C 0.07 1.33 5.33 71.98 0.38 1.71 16 4 C -0.09 -1.97 2.49 -10.71 -0.03 -1.99 16 5 C -0.10 -1.91 5.38 30.65 0.16 -1.74 16 6 C 0.05 1.27 5.02 86.33 0.43 1.70 16 7 N -0.53 -15.78 4.64 -871.19 -4.04 -19.82 16 8 C 0.10 3.43 2.23 44.92 0.10 3.53 16 9 C -0.12 -4.95 4.29 30.60 0.13 -4.82 16 10 C -0.09 -4.28 5.29 30.59 0.16 -4.12 16 11 C 0.04 1.87 2.45 -11.54 -0.03 1.84 16 12 C -0.50 -27.26 6.63 25.60 0.17 -27.09 16 13 H 0.05 2.85 6.53 -2.91 -0.02 2.83 16 14 C 0.02 0.94 5.20 84.66 0.44 1.38 16 15 N -0.92 -54.78 12.16 21.45 0.26 -54.52 16 16 Si 0.93 44.77 29.55 68.60 2.03 46.79 16 17 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 18 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 C -0.10 -4.07 5.42 30.59 0.17 -3.90 16 21 C -0.09 -3.33 4.78 30.59 0.15 -3.18 16 22 C 0.05 1.67 4.63 86.33 0.40 2.07 16 23 C -0.10 -2.54 5.25 30.65 0.16 -2.37 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.02 0.59 6.73 -2.38 -0.02 0.58 16 33 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 34 H 0.08 2.62 8.08 -2.39 -0.02 2.61 16 35 H 0.04 2.12 5.59 -2.39 -0.01 2.11 16 36 H 0.04 1.60 6.65 -2.39 -0.02 1.58 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.03 1.73 6.91 -2.39 -0.02 1.72 16 39 H -0.01 -0.45 8.09 -2.39 -0.02 -0.47 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 2.10 4.67 -2.39 -0.01 2.09 16 45 H 0.07 2.33 6.03 -2.39 -0.01 2.31 16 46 H 0.01 0.49 6.62 -2.39 -0.02 0.48 16 47 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.06 1.68 7.91 -2.39 -0.02 1.66 16 Total: -1.00 -62.00 349.43 1.66 -60.34 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.90 Total: 13.52 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.05 Total: -35.35 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -3.78 Total: -74.34 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.54 Total: -10.96 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -62.00 1.66 -60.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.529 kcal (2) G-P(sol) polarization free energy of solvation -61.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds