Wall clock time and date at job start Tue Mar 31 2020 06:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46782 * 2 1 4 4 C 1.53005 * 109.46848 * 119.99258 * 2 1 3 5 5 C 1.50705 * 109.47275 * 295.00279 * 4 2 1 6 6 H 1.08002 * 119.99740 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99978 * 180.02562 * 5 4 2 8 8 N 1.31502 * 120.00051 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99909 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47089 * 89.99917 * 9 7 5 11 11 H 1.48501 * 109.46975 * 210.00070 * 9 7 5 12 12 H 1.48499 * 109.47228 * 330.00233 * 9 7 5 13 13 C 1.52996 * 109.47318 * 239.99235 * 2 1 3 14 14 N 1.46902 * 109.46630 * 65.00148 * 13 2 1 15 15 C 1.46909 * 111.00084 * 66.04912 * 14 13 2 16 16 C 1.46901 * 110.99651 * 189.99804 * 14 13 2 17 17 C 1.53007 * 109.47145 * 167.74888 * 16 14 13 18 18 H 1.08999 * 109.47211 * 52.82314 * 17 16 14 19 19 C 1.53001 * 109.47315 * 172.82631 * 17 16 14 20 20 C 1.52999 * 109.46640 * 292.82763 * 17 16 14 21 21 C 1.53007 * 109.46766 * 186.38901 * 20 17 16 22 22 C 1.53002 * 109.46869 * 179.97438 * 21 20 17 23 23 C 1.53003 * 109.47073 * 60.00658 * 22 21 20 24 24 C 1.53007 * 109.46736 * 299.99423 * 23 22 21 25 25 C 1.52995 * 109.47634 * 66.39317 * 20 17 16 26 26 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47496 * 300.01090 * 1 2 3 28 28 H 1.09001 * 109.46902 * 60.00371 * 1 2 3 29 29 H 1.08995 * 109.46777 * 55.00103 * 4 2 1 30 30 H 1.08994 * 109.46835 * 174.99815 * 4 2 1 31 31 H 0.97003 * 120.00446 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.46844 * 305.00666 * 13 2 1 33 33 H 1.08992 * 109.47026 * 184.99661 * 13 2 1 34 34 H 1.08997 * 109.46997 * 186.06852 * 15 14 13 35 35 H 1.08998 * 109.46506 * 306.06647 * 15 14 13 36 36 H 1.08998 * 109.47054 * 66.06834 * 15 14 13 37 37 H 1.08991 * 109.47172 * 47.75199 * 16 14 13 38 38 H 1.09000 * 109.47543 * 287.74474 * 16 14 13 39 39 H 1.08999 * 109.46589 * 305.97010 * 19 17 16 40 40 H 1.09000 * 109.46924 * 65.96956 * 19 17 16 41 41 H 1.08998 * 109.46664 * 185.97324 * 19 17 16 42 42 H 1.08998 * 109.47292 * 306.38653 * 20 17 16 43 43 H 1.08991 * 109.47339 * 300.00106 * 21 20 17 44 44 H 1.08996 * 109.46903 * 60.00324 * 21 20 17 45 45 H 1.08998 * 109.47541 * 299.99968 * 22 21 20 46 46 H 1.09002 * 109.46647 * 180.02562 * 22 21 20 47 47 H 1.08997 * 109.46693 * 180.02562 * 23 22 21 48 48 H 1.08991 * 109.47188 * 59.99493 * 23 22 21 49 49 H 1.08998 * 109.47013 * 300.00161 * 24 23 22 50 50 H 1.09001 * 109.46593 * 180.02562 * 24 23 22 51 51 H 1.09002 * 109.46849 * 299.99438 * 25 20 17 52 52 H 1.08998 * 109.47323 * 59.99355 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6412 0.0573 2.4767 6 1 1.0805 0.9748 2.3756 7 6 1.9930 -0.4013 3.7284 8 7 1.6455 0.2782 4.7993 9 14 2.9634 -1.9880 3.9031 10 1 4.4169 -1.6845 3.8783 11 1 2.6160 -2.6414 5.1905 12 1 2.6288 -2.8992 2.7793 13 6 2.0400 -0.7214 -1.2491 14 7 1.6514 0.0372 -2.4455 15 6 2.3342 1.3373 -2.4895 16 6 1.9125 -0.7360 -3.6670 17 6 1.2262 -0.0595 -4.8554 18 1 1.5220 0.9887 -4.8973 19 6 1.6426 -0.7592 -6.1508 20 6 -0.2918 -0.1548 -4.6895 21 6 -0.9769 0.3778 -5.9496 22 6 -2.4949 0.2819 -5.7839 23 6 -2.9298 1.1148 -4.5764 24 6 -2.2446 0.5822 -3.3162 25 6 -0.7262 0.6783 -3.4820 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7196 1.2954 30 1 3.1262 -0.7994 1.2057 31 1 1.8934 -0.0442 5.6800 32 1 1.6053 -1.7198 -1.2949 33 1 3.1263 -0.7995 -1.2054 34 1 1.9491 1.9218 -3.3249 35 1 2.1548 1.8734 -1.5576 36 1 3.4052 1.1810 -2.6185 37 1 1.5209 -1.7462 -3.5481 38 1 2.9869 -0.7815 -3.8456 39 1 2.7303 -0.7844 -6.2165 40 1 1.2546 -1.7778 -6.1545 41 1 1.2396 -0.2137 -7.0040 42 1 -0.5757 -1.1956 -4.5339 43 1 -0.6931 1.4185 -6.1053 44 1 -0.6675 -0.2158 -6.8098 45 1 -2.7785 -0.7590 -5.6286 46 1 -2.9830 0.6609 -6.6819 47 1 -4.0111 1.0461 -4.4581 48 1 -2.6462 2.1556 -4.7318 49 1 -2.5282 -0.4587 -3.1608 50 1 -2.5547 1.1753 -2.4559 51 1 -0.2381 0.2989 -2.5843 52 1 -0.4423 1.7191 -3.6376 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183268498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:07 Heat of formation + Delta-G solvation = -37.585663 kcal Electronic energy + Delta-G solvation = -23975.617647 eV Core-core repulsion = 20973.412701 eV Total energy + Delta-G solvation = -3002.204946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.56285 -37.49945 -35.19993 -33.44550 -31.87480 -30.60755 -29.22257 -27.66325 -27.12404 -26.28515 -23.92187 -22.57216 -22.21049 -21.21250 -19.70098 -19.63511 -18.85239 -16.73396 -16.07417 -15.57931 -14.80425 -14.67581 -14.30036 -14.09887 -13.98443 -13.63763 -13.51004 -13.25263 -13.00794 -12.80737 -12.58985 -12.26209 -11.99172 -11.79933 -11.66360 -11.59360 -11.40054 -11.30361 -11.15043 -11.02371 -10.99679 -10.86210 -10.64016 -10.53184 -10.37176 -10.17543 -9.96106 -9.79024 -9.64590 -9.54924 -9.33550 -9.00635 -8.49197 -7.81658 -5.99628 -3.96194 3.32540 3.40233 3.43998 4.12824 4.48873 4.60297 4.75810 4.84205 4.98179 5.09996 5.24926 5.33622 5.37148 5.38005 5.47287 5.51088 5.54785 5.60077 5.66551 5.68056 5.70024 5.72242 5.79016 5.82008 5.83922 5.92144 6.00026 6.03814 6.06797 6.11032 6.15444 6.20593 6.24605 6.32352 6.35737 6.38312 6.46057 6.51997 6.61463 6.71725 6.87502 6.98868 7.16365 7.24073 7.28291 7.34804 7.41396 7.55242 7.85924 8.60324 9.06508 9.63609 11.13889 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.023344 B = 0.003923 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.159942 B = 7136.193298 C = 7847.144814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 H 0.062 0.938 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.054 3.946 14 N -0.527 5.527 15 C 0.018 3.982 16 C 0.058 3.942 17 C -0.085 4.085 18 H 0.070 0.930 19 C -0.148 4.148 20 C -0.067 4.067 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.138 4.138 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.015 0.985 30 H 0.006 0.994 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.020 0.980 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.130 0.870 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -0.762 -23.142 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 H 0.081 0.919 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.074 4.074 14 N -0.250 5.250 15 C -0.130 4.130 16 C -0.070 4.070 17 C -0.104 4.104 18 H 0.088 0.912 19 C -0.205 4.205 20 C -0.086 4.086 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.175 4.175 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.147 0.853 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.960 -0.685 -22.917 23.267 hybrid contribution 1.423 -0.973 0.157 1.731 sum -2.537 -1.658 -22.760 22.961 Atomic orbital electron populations 1.21725 0.95344 1.00648 1.00993 1.21034 0.96298 0.99167 0.92612 0.91935 1.19617 0.95282 0.96234 0.93604 1.21134 1.35193 1.09461 0.89082 0.90836 1.25021 0.95731 0.96833 0.95983 1.69910 1.47298 1.39309 0.97998 0.86822 0.80586 0.84649 0.77454 1.20497 1.21507 1.19085 1.22399 0.97569 0.97319 0.90069 1.62172 1.56681 1.04140 1.01966 1.22495 0.95600 0.91999 1.02895 1.22215 0.97489 0.97398 0.89941 1.21211 0.95727 0.99914 0.93501 0.91193 1.21865 1.00666 1.00605 0.97396 1.21031 0.92962 0.99704 0.94874 1.21689 0.94917 1.00841 0.97990 1.21506 0.96133 1.00113 0.97717 1.21554 0.99284 0.99349 0.95531 1.21579 0.96927 1.00634 0.96662 1.22282 0.94268 0.99400 1.01511 0.94314 0.92334 0.92966 0.96700 0.97529 0.92872 0.91395 0.95457 0.91789 0.90516 0.96134 0.91109 0.95294 0.93183 0.92794 0.92453 0.91983 0.92535 0.92467 0.92387 0.92873 0.92914 0.92492 0.92640 0.92382 0.85253 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.84 37.16 0.33 -2.09 16 2 C -0.07 -1.39 2.26 -90.62 -0.21 -1.60 16 3 H 0.06 1.24 6.23 -51.93 -0.32 0.92 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.39 8.96 -34.44 -0.31 -14.70 16 6 H 0.07 2.23 7.30 -52.49 -0.38 1.84 16 7 C 0.06 1.89 5.47 -17.83 -0.10 1.80 16 8 N -0.91 -28.04 13.96 55.43 0.77 -27.26 16 9 Si 0.88 21.89 27.47 -169.99 -4.67 17.23 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.05 0.85 4.35 -3.82 -0.02 0.84 16 14 N -0.53 -6.95 1.07 -242.92 -0.26 -7.21 16 15 C 0.02 0.23 8.98 60.07 0.54 0.77 16 16 C 0.06 0.66 4.31 -3.82 -0.02 0.64 16 17 C -0.08 -0.84 2.10 -90.62 -0.19 -1.03 16 18 H 0.07 0.73 6.39 -51.93 -0.33 0.40 16 19 C -0.15 -1.26 8.45 37.16 0.31 -0.94 16 20 C -0.07 -0.70 1.78 -90.62 -0.16 -0.86 16 21 C -0.12 -1.09 4.68 -26.73 -0.13 -1.21 16 22 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 23 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 24 C -0.12 -1.38 5.93 -26.70 -0.16 -1.54 16 25 C -0.14 -1.63 4.40 -26.71 -0.12 -1.74 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 28 H 0.05 0.85 5.43 -51.93 -0.28 0.57 16 29 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 30 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.07 1.07 7.90 -51.93 -0.41 0.66 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.06 0.72 6.51 -51.93 -0.34 0.39 16 35 H 0.08 1.08 6.13 -51.93 -0.32 0.76 16 36 H 0.02 0.26 8.10 -51.93 -0.42 -0.17 16 37 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 38 H 0.03 0.33 8.05 -51.93 -0.42 -0.08 16 39 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.45 6.70 -51.93 -0.35 0.10 16 42 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.13 1.74 2.69 -51.93 -0.14 1.60 16 52 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -28.87 370.70 -9.45 -38.32 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -10.25 Total: -2.05 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -0.63 Total: -24.60 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.51 Total: -34.48 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.87 -9.45 -38.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183268498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.734 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds