Wall clock time and date at job start Tue Mar 31 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46880 * 2 1 4 4 C 1.52995 * 109.47008 * 239.99449 * 2 1 3 5 5 C 1.53004 * 109.47008 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46888 * 60.00467 * 5 4 2 7 7 C 1.53006 * 109.47261 * 299.99969 * 6 5 4 8 8 C 1.52997 * 109.46797 * 59.99679 * 7 6 5 9 9 H 1.09005 * 109.47124 * 60.00629 * 8 7 6 10 10 C 1.53006 * 109.46797 * 180.02562 * 8 7 6 11 11 N 1.46895 * 109.47388 * 300.34173 * 10 8 7 12 12 C 1.46897 * 111.00044 * 181.65067 * 11 10 8 13 13 C 1.50703 * 109.47145 * 188.68952 * 12 11 10 14 14 H 1.07999 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37886 * 119.99894 * 180.27753 * 13 12 11 16 16 N 1.31508 * 119.99976 * 359.71827 * 15 13 12 17 17 Si 1.86799 * 119.99660 * 179.72326 * 15 13 12 18 18 H 1.48504 * 109.46987 * 89.99861 * 17 15 13 19 19 H 1.48505 * 109.46724 * 209.99779 * 17 15 13 20 20 H 1.48493 * 109.47331 * 329.99583 * 17 15 13 21 21 C 1.46897 * 111.00100 * 305.60402 * 11 10 8 22 22 C 1.53001 * 109.47190 * 284.46271 * 21 11 10 23 23 C 1.52999 * 109.46898 * 38.25330 * 22 21 11 24 24 C 1.53005 * 109.47016 * 158.24962 * 22 21 11 25 25 C 1.52994 * 109.46952 * 278.25039 * 22 21 11 26 26 H 1.08995 * 109.47293 * 300.00689 * 1 2 3 27 27 H 1.09003 * 109.46683 * 60.00359 * 1 2 3 28 28 H 1.08995 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47241 * 60.00535 * 4 2 1 30 30 H 1.08996 * 109.47751 * 300.00018 * 4 2 1 31 31 H 1.08995 * 109.47343 * 300.00293 * 5 4 2 32 32 H 1.09000 * 109.46938 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47555 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.47271 * 59.99781 * 6 5 4 35 35 H 1.09005 * 109.46769 * 300.00092 * 7 6 5 36 36 H 1.08990 * 109.47201 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.46907 * 180.33724 * 10 8 7 38 38 H 1.09000 * 109.46914 * 60.34746 * 10 8 7 39 39 H 1.08997 * 109.47401 * 68.68788 * 12 11 10 40 40 H 1.09003 * 109.46959 * 308.68683 * 12 11 10 41 41 H 0.96998 * 120.00502 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.47175 * 44.46524 * 21 11 10 43 43 H 1.09004 * 109.47028 * 164.45908 * 21 11 10 44 44 H 1.08996 * 109.47128 * 60.02894 * 23 22 21 45 45 H 1.09006 * 109.46621 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.46772 * 300.02842 * 23 22 21 47 47 H 1.09000 * 109.46808 * 59.99924 * 24 22 21 48 48 H 1.09000 * 109.46741 * 179.97438 * 24 22 21 49 49 H 1.08997 * 109.47152 * 300.00302 * 24 22 21 50 50 H 1.09002 * 109.47367 * 99.48904 * 25 22 21 51 51 H 1.08997 * 109.47222 * 219.48546 * 25 22 21 52 52 H 1.08995 * 109.47507 * 339.48571 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0794 -1.4435 0.0004 7 6 3.5694 -0.7222 1.2497 8 6 2.0394 -0.7216 1.2493 9 1 1.6757 -1.7492 1.2491 10 6 1.5294 0.0002 2.4982 11 7 2.0252 -0.6873 3.6979 12 6 1.5224 -0.0438 4.9190 13 6 2.2145 -0.6353 6.1200 14 1 2.9535 -1.4119 5.9893 15 6 1.8995 -0.1894 7.3862 16 7 0.9993 0.7560 7.5454 17 14 2.7518 -0.9280 8.8753 18 1 3.9815 -0.1521 9.1773 19 1 1.8366 -0.8799 10.0438 20 1 3.1148 -2.3391 8.5886 21 6 1.6728 -2.1131 3.6710 22 6 0.1882 -2.2780 4.0020 23 6 -0.6079 -1.1439 3.3533 24 6 -0.3080 -3.6218 3.4644 25 6 -0.0040 -2.2332 5.5192 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7490 -1.2491 31 1 3.9338 0.3056 -1.2486 32 1 3.9333 -1.2354 -2.1390 33 1 5.1694 -1.4436 0.0010 34 1 3.7157 -2.4710 0.0003 35 1 3.9332 0.3053 1.2499 36 1 3.9327 -1.2360 2.1396 37 1 0.4394 -0.0045 2.5009 38 1 1.8881 1.0295 2.4949 39 1 0.4481 -0.2089 5.0008 40 1 1.7232 1.0267 4.8746 41 1 0.7780 1.0700 8.4361 42 1 1.8709 -2.5177 2.6784 43 1 2.2711 -2.6492 4.4078 44 1 -0.4713 -1.1761 2.2724 45 1 -1.6656 -1.2611 3.5895 46 1 -0.2540 -0.1865 3.7358 47 1 0.2592 -4.4297 3.9266 48 1 -1.3656 -3.7394 3.7007 49 1 -0.1710 -3.6537 2.3836 50 1 -0.3382 -1.2384 5.8139 51 1 -0.7523 -2.9695 5.8125 52 1 0.9413 -2.4598 6.0121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191130945.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:33 Heat of formation + Delta-G solvation = 0.370955 kcal Electronic energy + Delta-G solvation = -25192.833221 eV Core-core repulsion = 22192.274198 eV Total energy + Delta-G solvation = -3000.559024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43936 -39.19064 -35.17173 -34.71605 -33.53366 -31.95828 -29.41792 -29.21566 -27.49839 -27.48112 -26.46262 -25.23916 -23.01840 -21.90009 -21.16625 -20.60769 -19.54406 -18.36725 -16.96132 -16.51487 -16.17906 -16.03112 -15.52772 -15.18942 -14.99828 -14.85574 -14.59390 -14.27734 -14.13013 -13.63483 -13.31323 -13.19638 -13.04748 -12.96206 -12.77544 -12.60136 -12.53008 -12.39694 -12.38364 -12.31075 -12.17325 -11.95962 -11.86825 -11.71910 -11.65065 -11.43478 -11.25417 -11.20479 -11.05787 -10.78049 -10.70016 -10.52235 -10.43374 -8.39078 -8.06103 -6.08161 1.40010 1.41715 1.50536 2.45465 3.25493 3.53572 3.82175 3.94809 4.02273 4.07511 4.10122 4.23843 4.29950 4.38026 4.54049 4.60267 4.67456 4.71545 4.73537 4.77048 4.80240 4.82013 4.84955 4.95386 4.97061 5.00767 5.06944 5.09541 5.13853 5.17350 5.20447 5.23430 5.29206 5.30212 5.30826 5.39437 5.44559 5.46805 5.49628 5.52530 5.56166 5.61989 5.69727 5.70816 5.78330 5.83529 5.96667 6.26702 6.61667 6.92102 7.03804 7.54580 9.02590 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.005382 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.992984 B = 5201.116455 C = 5656.802300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.058 0.942 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.067 4.067 9 H 0.072 0.928 10 C 0.013 3.987 11 N -0.539 5.539 12 C 0.179 3.821 13 C -0.486 4.486 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.931 5.931 17 Si 0.943 3.057 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.267 1.267 21 C 0.079 3.921 22 C -0.092 4.092 23 C -0.160 4.160 24 C -0.127 4.127 25 C -0.130 4.130 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.033 0.967 40 H -0.024 1.024 41 H 0.258 0.742 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.040 0.960 51 H 0.034 0.966 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -6.171 -17.525 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.076 0.924 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.141 4.141 8 C -0.085 4.085 9 H 0.090 0.910 10 C -0.114 4.114 11 N -0.262 5.262 12 C 0.053 3.947 13 C -0.525 4.525 14 H 0.068 0.932 15 C -0.186 4.186 16 N -0.572 5.572 17 Si 0.769 3.231 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.049 4.049 22 C -0.093 4.093 23 C -0.216 4.216 24 C -0.185 4.185 25 C -0.187 4.187 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.050 0.950 40 H -0.006 1.006 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.053 0.947 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.567 -6.026 -17.384 18.407 hybrid contribution -0.296 0.256 1.668 1.713 sum -0.862 -5.769 -15.716 16.764 Atomic orbital electron populations 1.21912 0.95028 1.02006 1.01617 1.21102 0.95668 0.99048 0.94400 0.92386 1.21541 0.95337 1.00685 0.96846 1.21521 0.95827 1.00437 0.97576 1.21532 1.00003 0.99317 0.94431 1.21396 0.95262 0.99721 0.97702 1.21156 0.95438 0.99105 0.92817 0.91014 1.23206 1.01221 0.96627 0.90299 1.62158 1.59559 1.02401 1.02048 1.20077 0.95874 0.91740 0.86959 1.21224 1.20785 1.19398 0.91109 0.93152 1.25535 0.96083 0.95856 1.01171 1.70047 1.34131 1.30275 1.22783 0.85784 0.78315 0.79186 0.79781 1.20792 1.21238 1.19144 1.22220 0.92602 0.89738 1.00370 1.21102 0.96849 0.96112 0.95271 1.22773 0.99153 0.98830 1.00834 1.21809 1.00606 0.95271 1.00833 1.22182 1.01089 0.99925 0.95510 0.93553 0.91678 0.92218 0.91061 0.91689 0.92628 0.90964 0.92245 0.91965 0.93998 0.93016 0.90074 0.94816 0.95020 1.00573 0.93302 0.90242 0.93476 0.90321 0.93609 0.92212 0.92714 0.92683 0.91661 0.94109 0.94723 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 7.98 71.98 0.57 -2.47 16 2 C -0.08 -1.85 2.25 -10.79 -0.02 -1.87 16 3 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.11 -1.92 5.20 30.59 0.16 -1.76 16 5 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 6 C -0.12 -2.51 5.92 30.60 0.18 -2.33 16 7 C -0.10 -2.90 5.04 30.60 0.15 -2.75 16 8 C -0.07 -1.81 1.08 -10.79 -0.01 -1.82 16 9 H 0.07 1.91 6.03 -2.38 -0.01 1.90 16 10 C 0.01 0.47 3.36 86.31 0.29 0.76 16 11 N -0.54 -22.37 4.03 -900.79 -3.63 -26.00 16 12 C 0.18 9.12 3.69 85.56 0.32 9.44 16 13 C -0.49 -26.63 5.60 25.60 0.14 -26.49 16 14 H 0.05 2.79 7.04 -2.91 -0.02 2.77 16 15 C 0.01 0.61 5.46 84.66 0.46 1.07 16 16 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 17 Si 0.94 44.63 29.54 68.60 2.03 46.66 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 C 0.08 2.89 4.47 86.30 0.39 3.28 16 22 C -0.09 -3.16 0.77 -52.18 -0.04 -3.20 16 23 C -0.16 -5.32 6.12 71.98 0.44 -4.87 16 24 C -0.13 -3.43 8.13 71.98 0.58 -2.84 16 25 C -0.13 -5.42 7.45 71.98 0.54 -4.89 16 26 H 0.05 1.08 6.18 -2.39 -0.01 1.07 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.14 7.94 -2.39 -0.02 1.12 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 1.26 8.14 -2.38 -0.02 1.25 16 36 H 0.05 1.71 7.48 -2.39 -0.02 1.69 16 37 H 0.08 2.73 1.59 -6.50 -0.01 2.72 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.03 1.67 2.40 -2.39 -0.01 1.67 16 40 H -0.02 -1.40 8.09 -2.39 -0.02 -1.42 16 41 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.08 2.51 5.23 -2.39 -0.01 2.50 16 43 H 0.05 1.94 6.55 -2.39 -0.02 1.92 16 44 H 0.08 2.23 5.02 -2.39 -0.01 2.21 16 45 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.06 2.38 3.40 -2.39 -0.01 2.37 16 47 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 49 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 50 H 0.04 1.98 5.67 -2.39 -0.01 1.97 16 51 H 0.03 1.28 7.71 -2.39 -0.02 1.26 16 52 H 0.06 2.60 5.34 -2.39 -0.01 2.59 16 Total: -1.00 -59.67 354.56 3.88 -55.79 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.86 Total: 21.02 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 4.33 Total: -42.69 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -3.35 Total: -80.77 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -59.67 3.88 -55.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191130945.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.165 kcal (2) G-P(sol) polarization free energy of solvation -59.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds