Wall clock time and date at job start Tue Mar 31 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46536 * 2 1 4 4 C 1.52994 * 109.47179 * 120.00042 * 2 1 3 5 5 C 1.53004 * 109.47179 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47058 * 300.00435 * 5 4 2 7 7 C 1.52995 * 109.47187 * 59.99506 * 6 5 4 8 8 C 1.52995 * 109.47610 * 300.00060 * 7 6 5 9 9 H 1.09004 * 109.47097 * 300.00505 * 8 7 6 10 10 C 1.52994 * 109.47404 * 180.02562 * 8 7 6 11 11 N 1.46899 * 109.47682 * 64.39258 * 10 8 7 12 12 C 1.46901 * 110.99796 * 76.19750 * 11 10 8 13 13 C 1.50696 * 109.46886 * 190.00195 * 12 11 10 14 14 H 1.08005 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99947 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99618 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99793 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47123 * 89.99905 * 17 15 13 19 19 H 1.48501 * 109.46914 * 209.99501 * 17 15 13 20 20 H 1.48496 * 109.47397 * 329.99967 * 17 15 13 21 21 C 1.46892 * 110.99955 * 200.15597 * 11 10 8 22 22 C 1.53004 * 109.47527 * 84.26043 * 21 11 10 23 23 C 1.52999 * 109.46915 * 57.60780 * 22 21 11 24 24 C 1.53000 * 109.47379 * 177.60765 * 22 21 11 25 25 C 1.53000 * 109.46653 * 297.60946 * 22 21 11 26 26 H 1.09003 * 109.46536 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47382 * 299.99773 * 1 2 3 28 28 H 1.09003 * 109.47063 * 59.99962 * 1 2 3 29 29 H 1.09005 * 109.47018 * 299.99910 * 4 2 1 30 30 H 1.09004 * 109.47354 * 59.99950 * 4 2 1 31 31 H 1.09003 * 109.46536 * 59.99958 * 5 4 2 32 32 H 1.08993 * 109.47306 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.46944 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46641 * 299.99540 * 6 5 4 35 35 H 1.08999 * 109.46821 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47302 * 60.00439 * 7 6 5 37 37 H 1.09004 * 109.46642 * 304.38942 * 10 8 7 38 38 H 1.09008 * 109.47345 * 184.39610 * 10 8 7 39 39 H 1.09000 * 109.47442 * 310.00437 * 12 11 10 40 40 H 1.08994 * 109.46659 * 70.00502 * 12 11 10 41 41 H 0.97007 * 119.99443 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.47132 * 204.25879 * 21 11 10 43 43 H 1.08999 * 109.47464 * 324.25507 * 21 11 10 44 44 H 1.09003 * 109.47562 * 60.00012 * 23 22 21 45 45 H 1.09004 * 109.47067 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47142 * 300.00399 * 23 22 21 47 47 H 1.09004 * 109.46792 * 59.99820 * 24 22 21 48 48 H 1.08990 * 109.47238 * 180.02562 * 24 22 21 49 49 H 1.09000 * 109.46749 * 300.00325 * 24 22 21 50 50 H 1.08995 * 109.47465 * 70.42535 * 25 22 21 51 51 H 1.09004 * 109.46406 * 190.42439 * 25 22 21 52 52 H 1.09003 * 109.47228 * 310.41994 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0806 -1.4414 0.0002 7 6 3.5705 -0.7202 -1.2489 8 6 2.0406 -0.7208 -1.2493 9 1 1.6776 -1.7486 -1.2495 10 6 1.5305 -0.0001 -2.4988 11 7 1.9321 -0.7511 -3.6957 12 6 1.0913 -1.9421 -3.8766 13 6 1.6789 -2.8123 -4.9575 14 1 2.5865 -2.5110 -5.4595 15 6 1.0579 -3.9931 -5.3055 16 7 -0.0469 -4.3601 -4.6937 17 14 1.7867 -5.0722 -6.6449 18 1 2.7368 -6.0394 -6.0390 19 1 0.6976 -5.8122 -7.3316 20 1 2.5050 -4.2229 -7.6287 21 6 1.8980 0.1038 -4.8897 22 6 3.2106 0.8826 -4.9971 23 6 4.3833 -0.0987 -5.0461 24 6 3.1992 1.7279 -6.2723 25 6 3.3617 1.7975 -3.7801 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6767 -0.2074 2.1392 30 1 1.6767 -1.7489 1.2492 31 1 3.9329 0.3072 1.2497 32 1 3.9334 -1.2341 2.1396 33 1 5.1706 -1.4406 0.0002 34 1 3.7176 -2.4693 0.0000 35 1 3.9346 -1.2335 -2.1389 36 1 3.9335 0.3076 -1.2488 37 1 1.9563 1.0025 -2.5391 38 1 0.4433 0.0682 -2.4605 39 1 1.0486 -2.5020 -2.9424 40 1 0.0852 -1.6362 -4.1632 41 1 -0.4836 -5.1911 -4.9384 42 1 1.7699 -0.5163 -5.7770 43 1 1.0657 0.8033 -4.8121 44 1 4.2757 -0.7506 -5.9131 45 1 5.3185 0.4561 -5.1222 46 1 4.3914 -0.7010 -4.1376 47 1 2.3637 2.4271 -6.2373 48 1 4.1344 2.2824 -6.3490 49 1 3.0915 1.0761 -7.1393 50 1 3.5552 1.1938 -2.8934 51 1 4.1938 2.4827 -3.9418 52 1 2.4437 2.3678 -3.6380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191130948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:42 Heat of formation + Delta-G solvation = -38.658945 kcal Electronic energy + Delta-G solvation = -24763.415357 eV Core-core repulsion = 21761.163870 eV Total energy + Delta-G solvation = -3002.251487 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.25793 -37.55079 -34.58010 -32.68464 -32.19921 -30.77393 -27.63440 -26.73790 -26.59687 -26.39863 -25.19274 -23.51985 -21.79528 -20.77903 -19.93233 -19.13404 -18.20021 -16.30457 -15.02398 -14.96439 -14.61932 -14.37318 -14.25452 -14.02955 -13.70035 -13.52382 -13.39522 -12.91658 -12.60815 -12.31967 -12.20495 -11.97565 -11.86340 -11.56426 -11.43198 -11.32142 -11.23850 -11.18466 -11.03050 -10.85750 -10.81480 -10.59119 -10.53926 -10.44852 -10.25678 -10.14946 -9.96215 -9.83578 -9.57303 -9.47862 -9.19249 -9.03587 -8.36741 -7.04595 -5.97353 -3.97231 3.34035 3.40352 3.43492 4.46518 4.84453 4.97468 5.03604 5.16661 5.34333 5.37565 5.39215 5.43709 5.44642 5.58055 5.68473 5.74544 5.84801 5.87709 5.89381 5.92809 5.99733 6.04024 6.09322 6.10533 6.13122 6.16468 6.22116 6.30168 6.32033 6.35021 6.38099 6.40994 6.47579 6.53375 6.56589 6.57100 6.63128 6.72050 6.76230 6.78834 6.92695 6.97804 7.06095 7.19019 7.42582 7.47026 7.89999 8.21885 8.35243 8.67256 9.11843 9.66530 11.13421 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.006575 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.739871 B = 4257.838655 C = 5422.091320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 H 0.062 0.938 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.102 4.102 8 C -0.072 4.072 9 H 0.073 0.927 10 C 0.039 3.961 11 N -0.526 5.526 12 C 0.195 3.805 13 C -0.501 4.501 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.071 3.929 22 C -0.061 4.061 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.146 4.146 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.023 0.977 39 H 0.030 0.970 40 H -0.015 1.015 41 H 0.259 0.741 42 H 0.082 0.918 43 H 0.015 0.985 44 H 0.049 0.951 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.075 0.925 51 H 0.039 0.961 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.818 11.018 7.544 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.159 4.159 7 C -0.140 4.140 8 C -0.091 4.091 9 H 0.092 0.908 10 C -0.089 4.089 11 N -0.250 5.250 12 C 0.070 3.930 13 C -0.540 4.540 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.721 3.279 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.057 4.057 22 C -0.062 4.062 23 C -0.183 4.183 24 C -0.198 4.198 25 C -0.202 4.202 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.002 0.998 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.034 0.966 44 H 0.068 0.932 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.058 0.942 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.155 10.704 7.606 14.502 hybrid contribution -0.691 -0.462 -0.838 1.180 sum 5.465 10.242 6.768 13.438 Atomic orbital electron populations 1.21893 0.95766 1.01972 1.00988 1.21129 0.95103 0.99122 0.95044 0.91958 1.21566 0.95446 1.00737 0.97190 1.21519 0.95782 1.00277 0.97835 1.21572 0.99476 0.99814 0.95006 1.21486 0.95212 0.99540 0.97740 1.21105 0.95412 1.00112 0.92498 0.90826 1.22598 0.97192 0.97779 0.91350 1.61955 1.55255 1.07143 1.00640 1.19715 0.89832 0.86327 0.97168 1.21206 1.09626 1.04422 1.18709 0.91782 1.24971 0.95017 0.97849 0.96781 1.69965 1.18395 1.23332 1.42219 0.86590 0.78615 0.80674 0.82066 1.20769 1.21497 1.19925 1.22035 0.93438 0.94687 0.95557 1.20504 0.96977 0.94862 0.93846 1.21700 0.94986 0.98286 1.03314 1.21860 1.00573 0.99398 0.97929 1.22187 0.99803 0.98818 0.99441 0.92621 0.93570 0.92428 0.92802 0.92060 0.92547 0.92866 0.92796 0.92103 0.90049 0.93181 0.90662 0.95903 0.95161 0.99769 0.93127 0.89960 0.96629 0.93216 0.94952 0.90759 0.93470 0.93352 0.92791 0.90642 0.94160 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.85 37.16 0.33 -1.68 16 2 C -0.08 -1.14 2.25 -90.62 -0.20 -1.35 16 3 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -1.38 5.20 -26.73 -0.14 -1.52 16 5 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 6 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 7 C -0.10 -1.53 4.43 -26.74 -0.12 -1.65 16 8 C -0.07 -1.16 1.77 -90.63 -0.16 -1.32 16 9 H 0.07 1.41 6.70 -51.93 -0.35 1.07 16 10 C 0.04 0.67 3.39 -3.83 -0.01 0.66 16 11 N -0.53 -10.56 2.81 -236.08 -0.66 -11.22 16 12 C 0.19 4.91 4.52 -4.98 -0.02 4.88 16 13 C -0.50 -13.66 8.15 -34.44 -0.28 -13.94 16 14 H 0.06 1.73 7.45 -52.48 -0.39 1.34 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 17 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.07 1.35 3.95 -3.83 -0.02 1.34 16 22 C -0.06 -0.96 0.85 -154.51 -0.13 -1.09 16 23 C -0.13 -2.05 8.27 37.16 0.31 -1.75 16 24 C -0.14 -1.94 8.45 37.16 0.31 -1.63 16 25 C -0.15 -2.04 6.83 37.16 0.25 -1.78 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.41 6.67 -51.93 -0.35 1.06 16 36 H 0.05 0.70 6.74 -51.93 -0.35 0.35 16 37 H 0.08 1.18 3.91 -51.93 -0.20 0.98 16 38 H 0.02 0.43 6.06 -51.92 -0.31 0.11 16 39 H 0.03 0.83 6.60 -51.93 -0.34 0.48 16 40 H -0.02 -0.43 8.12 -51.93 -0.42 -0.85 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.08 1.78 6.61 -51.93 -0.34 1.43 16 43 H 0.02 0.29 7.87 -51.93 -0.41 -0.12 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 1.32 6.48 -51.93 -0.34 0.99 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.07 1.09 4.08 -51.93 -0.21 0.88 16 51 H 0.04 0.51 8.11 -51.93 -0.42 0.09 16 52 H 0.04 0.61 7.38 -51.93 -0.38 0.22 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -27.64 372.59 -9.83 -37.48 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -10.20 Total: 0.06 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -0.29 Total: -22.69 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.07 Total: -37.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.64 -9.83 -37.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191130948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.183 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds