Wall clock time and date at job start Tue Mar 31 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46536 * 2 1 4 4 C 1.52994 * 109.47179 * 120.00042 * 2 1 3 5 5 C 1.53004 * 109.47179 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47058 * 300.00435 * 5 4 2 7 7 C 1.52995 * 109.47187 * 59.99506 * 6 5 4 8 8 C 1.52995 * 109.47610 * 300.00060 * 7 6 5 9 9 H 1.09004 * 109.47097 * 300.00505 * 8 7 6 10 10 C 1.52994 * 109.47404 * 180.02562 * 8 7 6 11 11 N 1.46899 * 109.47682 * 64.39258 * 10 8 7 12 12 C 1.46901 * 110.99796 * 76.19750 * 11 10 8 13 13 C 1.50696 * 109.46886 * 190.00195 * 12 11 10 14 14 H 1.08005 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99947 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99618 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99793 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47123 * 89.99905 * 17 15 13 19 19 H 1.48501 * 109.46914 * 209.99501 * 17 15 13 20 20 H 1.48496 * 109.47397 * 329.99967 * 17 15 13 21 21 C 1.46892 * 110.99955 * 200.15597 * 11 10 8 22 22 C 1.53004 * 109.47527 * 84.26043 * 21 11 10 23 23 C 1.52999 * 109.46915 * 57.60780 * 22 21 11 24 24 C 1.53000 * 109.47379 * 177.60765 * 22 21 11 25 25 C 1.53000 * 109.46653 * 297.60946 * 22 21 11 26 26 H 1.09003 * 109.46536 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47382 * 299.99773 * 1 2 3 28 28 H 1.09003 * 109.47063 * 59.99962 * 1 2 3 29 29 H 1.09005 * 109.47018 * 299.99910 * 4 2 1 30 30 H 1.09004 * 109.47354 * 59.99950 * 4 2 1 31 31 H 1.09003 * 109.46536 * 59.99958 * 5 4 2 32 32 H 1.08993 * 109.47306 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.46944 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46641 * 299.99540 * 6 5 4 35 35 H 1.08999 * 109.46821 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47302 * 60.00439 * 7 6 5 37 37 H 1.09004 * 109.46642 * 304.38942 * 10 8 7 38 38 H 1.09008 * 109.47345 * 184.39610 * 10 8 7 39 39 H 1.09000 * 109.47442 * 310.00437 * 12 11 10 40 40 H 1.08994 * 109.46659 * 70.00502 * 12 11 10 41 41 H 0.97007 * 119.99443 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.47132 * 204.25879 * 21 11 10 43 43 H 1.08999 * 109.47464 * 324.25507 * 21 11 10 44 44 H 1.09003 * 109.47562 * 60.00012 * 23 22 21 45 45 H 1.09004 * 109.47067 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47142 * 300.00399 * 23 22 21 47 47 H 1.09004 * 109.46792 * 59.99820 * 24 22 21 48 48 H 1.08990 * 109.47238 * 180.02562 * 24 22 21 49 49 H 1.09000 * 109.46749 * 300.00325 * 24 22 21 50 50 H 1.08995 * 109.47465 * 70.42535 * 25 22 21 51 51 H 1.09004 * 109.46406 * 190.42439 * 25 22 21 52 52 H 1.09003 * 109.47228 * 310.41994 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0806 -1.4414 0.0002 7 6 3.5705 -0.7202 -1.2489 8 6 2.0406 -0.7208 -1.2493 9 1 1.6776 -1.7486 -1.2495 10 6 1.5305 -0.0001 -2.4988 11 7 1.9321 -0.7511 -3.6957 12 6 1.0913 -1.9421 -3.8766 13 6 1.6789 -2.8123 -4.9575 14 1 2.5865 -2.5110 -5.4595 15 6 1.0579 -3.9931 -5.3055 16 7 -0.0469 -4.3601 -4.6937 17 14 1.7867 -5.0722 -6.6449 18 1 2.7368 -6.0394 -6.0390 19 1 0.6976 -5.8122 -7.3316 20 1 2.5050 -4.2229 -7.6287 21 6 1.8980 0.1038 -4.8897 22 6 3.2106 0.8826 -4.9971 23 6 4.3833 -0.0987 -5.0461 24 6 3.1992 1.7279 -6.2723 25 6 3.3617 1.7975 -3.7801 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6767 -0.2074 2.1392 30 1 1.6767 -1.7489 1.2492 31 1 3.9329 0.3072 1.2497 32 1 3.9334 -1.2341 2.1396 33 1 5.1706 -1.4406 0.0002 34 1 3.7176 -2.4693 0.0000 35 1 3.9346 -1.2335 -2.1389 36 1 3.9335 0.3076 -1.2488 37 1 1.9563 1.0025 -2.5391 38 1 0.4433 0.0682 -2.4605 39 1 1.0486 -2.5020 -2.9424 40 1 0.0852 -1.6362 -4.1632 41 1 -0.4836 -5.1911 -4.9384 42 1 1.7699 -0.5163 -5.7770 43 1 1.0657 0.8033 -4.8121 44 1 4.2757 -0.7506 -5.9131 45 1 5.3185 0.4561 -5.1222 46 1 4.3914 -0.7010 -4.1376 47 1 2.3637 2.4271 -6.2373 48 1 4.1344 2.2824 -6.3490 49 1 3.0915 1.0761 -7.1393 50 1 3.5552 1.1938 -2.8934 51 1 4.1938 2.4827 -3.9418 52 1 2.4437 2.3678 -3.6380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191130948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:42 Heat of formation + Delta-G solvation = -51.097013 kcal Electronic energy + Delta-G solvation = -24763.954712 eV Core-core repulsion = 21761.163870 eV Total energy + Delta-G solvation = -3002.790842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.59382 -38.85632 -36.14757 -34.56261 -33.47876 -32.13515 -29.31417 -28.12860 -27.94187 -27.62271 -26.54027 -25.26448 -23.30556 -21.99204 -21.22304 -20.50755 -19.53661 -18.42757 -16.79930 -16.30563 -16.12254 -15.92447 -15.40594 -15.37931 -14.91233 -14.75892 -14.66493 -14.34073 -14.14881 -13.99023 -13.58992 -13.34624 -13.26574 -12.92006 -12.79020 -12.66589 -12.64005 -12.57604 -12.45963 -12.35116 -12.22927 -12.15257 -11.98128 -11.74532 -11.63024 -11.43650 -11.38431 -11.32620 -11.10909 -10.76063 -10.73673 -10.59938 -10.47875 -8.79287 -8.17246 -6.25247 1.38460 1.39541 1.50278 2.40289 3.14971 3.36176 3.82590 3.93800 3.97578 4.06148 4.14521 4.21425 4.29630 4.36998 4.54613 4.59876 4.62212 4.67560 4.71941 4.76530 4.79288 4.83338 4.88398 4.91622 4.96952 4.98273 5.02960 5.04362 5.09560 5.14462 5.18245 5.23066 5.25195 5.26430 5.29631 5.33292 5.38253 5.41715 5.42001 5.47195 5.51743 5.55871 5.67079 5.69665 5.73271 5.79066 5.87286 6.15136 6.49967 6.80197 6.93653 7.43782 8.93675 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.006575 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.739871 B = 4257.838655 C = 5422.091320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.095 4.095 8 C -0.068 4.068 9 H 0.028 0.972 10 C 0.041 3.959 11 N -0.520 5.520 12 C 0.216 3.784 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.961 3.039 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.071 3.929 22 C -0.057 4.057 23 C -0.121 4.121 24 C -0.136 4.136 25 C -0.142 4.142 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.006 0.994 39 H 0.001 0.999 40 H -0.054 1.054 41 H 0.261 0.739 42 H 0.048 0.952 43 H 0.016 0.984 44 H 0.028 0.972 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.043 0.957 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.947 13.305 8.187 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.133 4.133 8 C -0.087 4.087 9 H 0.047 0.953 10 C -0.087 4.087 11 N -0.243 5.243 12 C 0.089 3.911 13 C -0.548 4.548 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.578 5.578 17 Si 0.786 3.214 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.057 4.057 22 C -0.057 4.057 23 C -0.179 4.179 24 C -0.194 4.194 25 C -0.199 4.199 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.024 0.976 39 H 0.019 0.981 40 H -0.036 1.036 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.298 13.009 8.250 17.497 hybrid contribution -1.389 -1.155 -1.037 2.083 sum 6.909 11.854 7.213 15.501 Atomic orbital electron populations 1.21879 0.96067 1.00791 1.01750 1.21107 0.94850 0.99831 0.94055 0.89881 1.21565 0.96171 0.99791 0.97297 1.21493 0.94957 1.01152 0.97199 1.21559 1.00349 0.98632 0.95274 1.21389 0.93953 1.00508 0.97425 1.21034 0.96473 0.97756 0.93401 0.95308 1.22724 0.96434 0.98844 0.90693 1.61944 1.53500 1.06549 1.02284 1.19291 0.88601 0.88129 0.95067 1.21485 1.09503 1.04832 1.18958 0.91771 1.25861 0.95356 0.99362 0.99167 1.70105 1.19842 1.23929 1.43891 0.85504 0.77926 0.78748 0.79196 1.20062 1.21038 1.18841 1.22080 0.95961 0.94158 0.93497 1.20469 0.94211 0.94912 0.96153 1.21644 0.96627 0.98222 1.01368 1.21824 1.02220 0.99134 0.96179 1.22120 1.01180 0.98669 0.97905 0.94827 0.90973 0.93424 0.90477 0.93906 0.90765 0.91348 0.91297 0.94353 0.93017 0.91104 0.87932 0.97568 0.98114 1.03613 0.93029 0.93307 0.96557 0.95271 0.92197 0.92661 0.92621 0.90982 0.93826 0.91238 0.91598 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 8.85 71.98 0.64 -3.33 16 2 C -0.08 -2.05 2.25 -10.79 -0.02 -2.08 16 3 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.11 -2.55 5.20 30.59 0.16 -2.39 16 5 C -0.11 -2.31 5.92 30.60 0.18 -2.13 16 6 C -0.12 -3.12 5.92 30.59 0.18 -2.94 16 7 C -0.10 -2.81 4.43 30.59 0.14 -2.68 16 8 C -0.07 -2.23 1.77 -10.80 -0.02 -2.25 16 9 H 0.03 1.20 6.70 -2.38 -0.02 1.18 16 10 C 0.04 1.44 3.39 86.30 0.29 1.73 16 11 N -0.52 -21.88 2.81 -900.81 -2.53 -24.42 16 12 C 0.22 11.69 4.52 85.56 0.39 12.08 16 13 C -0.51 -29.17 8.15 25.60 0.21 -28.96 16 14 H 0.06 3.60 7.45 -2.91 -0.02 3.58 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.94 -57.89 13.29 21.45 0.28 -57.60 16 17 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 21 C 0.07 2.78 3.95 86.31 0.34 3.12 16 22 C -0.06 -1.70 0.85 -52.18 -0.04 -1.75 16 23 C -0.12 -3.85 8.27 71.98 0.60 -3.26 16 24 C -0.14 -3.46 8.45 71.98 0.61 -2.85 16 25 C -0.14 -3.53 6.83 71.98 0.49 -3.04 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.35 6.34 -2.39 -0.02 1.34 16 29 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.05 1.83 6.67 -2.39 -0.02 1.82 16 36 H 0.07 1.80 6.74 -2.38 -0.02 1.78 16 37 H 0.10 3.09 3.91 -2.39 -0.01 3.08 16 38 H 0.01 0.24 6.06 -2.38 -0.01 0.23 16 39 H 0.00 0.05 6.60 -2.39 -0.02 0.03 16 40 H -0.05 -3.26 8.12 -2.39 -0.02 -3.28 16 41 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 42 H 0.05 2.21 6.61 -2.38 -0.02 2.19 16 43 H 0.02 0.62 7.87 -2.39 -0.02 0.60 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.05 1.96 6.48 -2.38 -0.02 1.95 16 47 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.81 4.08 -2.39 -0.01 1.80 16 51 H 0.07 1.35 8.11 -2.38 -0.02 1.33 16 52 H 0.05 1.21 7.38 -2.39 -0.02 1.19 16 Total: -1.00 -63.75 372.59 5.21 -58.54 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.84 Total: 16.24 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 4.59 Total: -40.26 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -2.25 Total: -82.02 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -63.75 5.21 -58.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191130948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.447 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds