Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47255 * 2 1 4 4 H 1.09002 * 109.47411 * 305.00077 * 3 2 1 5 5 C 1.52999 * 109.47316 * 64.99889 * 3 2 1 6 6 C 1.52994 * 109.47620 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46943 * 300.00091 * 6 5 3 8 8 C 1.53003 * 109.46885 * 59.99891 * 7 6 5 9 9 H 1.08992 * 109.47088 * 60.00324 * 8 7 6 10 10 C 1.52997 * 109.46716 * 180.02562 * 8 7 6 11 11 N 1.46901 * 109.47134 * 186.61805 * 10 8 7 12 12 C 1.46900 * 111.00129 * 214.23641 * 11 10 8 13 13 C 1.50700 * 109.47128 * 163.91137 * 12 11 10 14 14 H 1.08004 * 119.99771 * 4.84212 * 13 12 11 15 15 C 1.37877 * 120.00272 * 184.84567 * 13 12 11 16 16 N 1.31512 * 119.99803 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00162 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47282 * 59.99292 * 17 15 13 19 19 H 1.48505 * 109.46776 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46664 * 299.99533 * 17 15 13 21 21 C 1.46899 * 111.00049 * 90.28187 * 11 10 8 22 22 C 1.52991 * 109.47310 * 284.94492 * 21 11 10 23 23 C 1.53004 * 109.47429 * 180.98152 * 22 21 11 24 24 C 1.53002 * 109.47149 * 300.98190 * 22 21 11 25 25 C 1.52997 * 109.47345 * 184.99833 * 3 2 1 26 26 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47380 * 300.00311 * 1 2 3 28 28 H 1.09003 * 109.47014 * 59.99928 * 1 2 3 29 29 H 1.09001 * 109.47143 * 240.00166 * 2 1 3 30 30 H 1.09003 * 109.47014 * 120.00072 * 2 1 3 31 31 H 1.09006 * 109.47209 * 300.00336 * 5 3 2 32 32 H 1.09001 * 109.47136 * 59.99420 * 5 3 2 33 33 H 1.09002 * 109.47443 * 59.99982 * 6 5 3 34 34 H 1.08999 * 109.47308 * 180.02562 * 6 5 3 35 35 H 1.08997 * 109.47203 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47150 * 299.99666 * 7 6 5 37 37 H 1.09003 * 109.47746 * 306.62055 * 10 8 7 38 38 H 1.09006 * 109.47691 * 66.61865 * 10 8 7 39 39 H 1.08994 * 109.47680 * 283.90995 * 12 11 10 40 40 H 1.09002 * 109.47027 * 43.91786 * 12 11 10 41 41 H 0.97006 * 120.00266 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.46995 * 44.94622 * 21 11 10 43 43 H 1.08996 * 109.47007 * 164.93957 * 21 11 10 44 44 H 1.09004 * 109.47486 * 60.97973 * 22 21 11 45 45 H 1.08995 * 109.46940 * 59.99758 * 23 22 21 46 46 H 1.08998 * 109.47035 * 180.02562 * 23 22 21 47 47 H 1.09002 * 109.46596 * 300.00146 * 23 22 21 48 48 H 1.08996 * 109.47325 * 64.54403 * 24 22 21 49 49 H 1.09002 * 109.46839 * 184.54355 * 24 22 21 50 50 H 1.09000 * 109.46800 * 304.54397 * 24 22 21 51 51 H 1.08993 * 109.47285 * 299.99908 * 25 3 2 52 52 H 1.09006 * 109.47075 * 60.00292 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1447 3.5692 1.3071 7 6 3.6696 3.5715 1.1811 8 6 4.0743 2.8875 -0.1263 9 1 3.6394 3.4263 -0.9680 10 6 5.5991 2.8893 -0.2519 11 7 5.9820 2.3774 -1.5746 12 6 7.2376 1.6183 -1.5020 13 6 7.3967 0.7900 -2.7508 14 1 6.6817 0.8827 -3.5550 15 6 8.4549 -0.0862 -2.8668 16 7 9.3257 -0.1988 -1.8878 17 14 8.6525 -1.1124 -4.4152 18 1 8.7998 -0.2145 -5.5887 19 1 9.8605 -1.9672 -4.2916 20 1 7.4544 -1.9709 -4.5962 21 6 6.0826 3.4689 -2.5526 22 6 4.6785 3.9257 -2.9532 23 6 4.7830 5.0459 -3.9901 24 6 3.9100 2.7462 -3.5524 25 6 3.5648 1.4443 -0.1257 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5489 2.1252 1.3969 32 1 2.0698 1.5874 2.1492 33 1 1.7098 4.1080 0.4653 34 1 1.8567 4.0563 2.2387 35 1 4.0325 4.5993 1.1805 36 1 4.1045 3.0327 2.0229 37 1 5.9723 3.9066 -0.1341 38 1 6.0283 2.2530 0.5221 39 1 8.0757 2.3096 -1.4153 40 1 7.2158 0.9625 -0.6315 41 1 10.0704 -0.8150 -1.9695 42 1 6.6241 4.3048 -2.1097 43 1 6.6162 3.1174 -3.4356 44 1 4.1510 4.2934 -2.0730 45 1 5.3104 4.6782 -4.8702 46 1 3.7827 5.3716 -4.2752 47 1 5.3306 5.8862 -3.5632 48 1 3.7653 1.9815 -2.7893 49 1 2.9398 3.0895 -3.9114 50 1 4.4776 2.3274 -4.3834 51 1 3.9994 0.9053 0.7161 52 1 3.8532 0.9570 -1.0571 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205083563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = -46.765281 kcal Electronic energy + Delta-G solvation = -24273.485598 eV Core-core repulsion = 21270.882593 eV Total energy + Delta-G solvation = -3002.603004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.19894 -37.17603 -34.19071 -33.70970 -32.35507 -30.79970 -29.03140 -27.06019 -26.63795 -25.66177 -23.91797 -23.25430 -21.77996 -20.66319 -19.78780 -19.54494 -19.00303 -16.22985 -15.50046 -15.15311 -14.73044 -14.61427 -14.23185 -13.90719 -13.84774 -13.48367 -13.24709 -13.17650 -12.69959 -12.61376 -12.22011 -12.20648 -11.79125 -11.71982 -11.60657 -11.39646 -11.19913 -11.10177 -10.92530 -10.88478 -10.76005 -10.73028 -10.61329 -10.53050 -10.35704 -10.23880 -10.13133 -9.72031 -9.65191 -9.52516 -9.37651 -9.06708 -8.38126 -7.11508 -5.97403 -3.97834 3.35802 3.39879 3.42846 4.45898 4.80956 4.84058 4.91870 5.08630 5.24242 5.31707 5.34753 5.38535 5.42399 5.47880 5.50187 5.64972 5.72175 5.74843 5.81028 5.87074 5.87833 5.92233 6.00318 6.04160 6.07331 6.12215 6.14576 6.16532 6.21477 6.30092 6.33284 6.33549 6.36542 6.40486 6.49833 6.54442 6.57322 6.60800 6.65143 6.68708 6.87492 6.89529 7.07009 7.15682 7.37875 7.40621 7.88483 8.19363 8.33089 8.64052 9.10036 9.65891 11.13247 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.013962 B = 0.005221 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.927521 B = 5361.795235 C = 5972.437737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.086 4.086 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.116 4.116 8 C -0.087 4.087 9 H 0.081 0.919 10 C 0.058 3.942 11 N -0.528 5.528 12 C 0.195 3.805 13 C -0.500 4.500 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.894 3.106 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.068 3.932 22 C -0.097 4.097 23 C -0.146 4.146 24 C -0.134 4.134 25 C -0.099 4.099 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.024 0.976 38 H 0.059 0.941 39 H -0.016 1.016 40 H 0.031 0.969 41 H 0.260 0.740 42 H 0.015 0.985 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.032 0.968 50 H 0.049 0.951 51 H 0.051 0.949 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 6.950 4.072 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.105 4.105 4 H 0.083 0.917 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.106 4.106 9 H 0.099 0.901 10 C -0.071 4.071 11 N -0.251 5.251 12 C 0.069 3.931 13 C -0.538 4.538 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.723 3.277 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.202 1.202 21 C -0.060 4.060 22 C -0.116 4.116 23 C -0.204 4.204 24 C -0.191 4.191 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.002 0.998 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.092 0.908 49 H 0.051 0.949 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.361 6.510 3.966 17.149 hybrid contribution 0.970 -0.048 -0.464 1.076 sum -14.392 6.463 3.502 16.160 Atomic orbital electron populations 1.21817 0.96566 1.01019 1.01490 1.21566 0.95124 0.97006 1.02112 1.21201 0.96907 0.95105 0.97274 0.91670 1.21622 0.99741 0.95687 0.98000 1.21491 0.96187 0.96748 1.00866 1.21600 0.95214 1.00041 0.98558 1.21444 0.95815 0.96527 0.96786 0.90079 1.22186 0.94695 0.97389 0.92811 1.61969 1.36117 1.22341 1.04668 1.19752 0.83550 0.91755 0.97999 1.21132 1.09222 1.21509 1.01977 0.91961 1.24970 0.95973 0.97204 0.96468 1.69948 1.14481 1.37638 1.32001 0.86620 0.77356 0.80249 0.83519 1.20391 1.21481 1.20228 1.22114 0.94689 0.91857 0.97353 1.21326 0.97339 0.95265 0.97627 1.21833 1.00721 0.98350 0.99464 1.21708 0.97557 0.98417 1.01406 1.21531 0.92728 0.96420 1.02952 0.93296 0.92872 0.93003 0.91788 0.92307 0.92595 0.92373 0.92394 0.92816 0.92785 0.92401 0.95798 0.92241 0.99824 0.95115 0.93012 0.96695 0.90298 0.91333 0.92822 0.93380 0.93466 0.90819 0.94928 0.93175 0.92989 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 37.16 0.36 -1.15 16 2 C -0.12 -1.42 5.40 -26.73 -0.14 -1.56 16 3 C -0.09 -1.06 2.19 -90.62 -0.20 -1.26 16 4 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.11 -1.25 4.96 -26.73 -0.13 -1.38 16 6 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 7 C -0.12 -1.45 5.20 -26.73 -0.14 -1.59 16 8 C -0.09 -1.27 1.88 -90.60 -0.17 -1.44 16 9 H 0.08 1.20 4.25 -51.93 -0.22 0.98 16 10 C 0.06 1.03 4.40 -3.83 -0.02 1.01 16 11 N -0.53 -10.80 3.11 -236.08 -0.73 -11.53 16 12 C 0.19 4.98 4.68 -4.98 -0.02 4.96 16 13 C -0.50 -13.81 8.43 -34.44 -0.29 -14.10 16 14 H 0.06 1.71 7.54 -52.48 -0.40 1.31 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.07 1.30 4.22 -3.83 -0.02 1.28 16 22 C -0.10 -1.50 2.44 -90.62 -0.22 -1.72 16 23 C -0.15 -1.97 9.19 37.16 0.34 -1.63 16 24 C -0.13 -2.11 8.67 37.16 0.32 -1.79 16 25 C -0.10 -1.47 4.13 -26.71 -0.11 -1.58 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.02 0.42 7.47 -51.93 -0.39 0.03 16 38 H 0.06 1.12 7.40 -51.93 -0.38 0.74 16 39 H -0.02 -0.44 8.05 -51.93 -0.42 -0.86 16 40 H 0.03 0.85 7.61 -51.93 -0.39 0.46 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.01 0.28 7.64 -51.93 -0.40 -0.11 16 43 H 0.08 1.68 6.97 -51.93 -0.36 1.32 16 44 H 0.07 1.03 5.19 -51.93 -0.27 0.76 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 1.26 5.71 -51.93 -0.30 0.96 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 52 H 0.08 1.43 6.48 -51.93 -0.34 1.10 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -27.90 380.12 -10.43 -38.32 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -10.44 Total: -1.22 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -0.70 Total: -21.94 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.00 Total: -37.60 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.90 -10.43 -38.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205083563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.440 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds