Wall clock time and date at job start Tue Mar 31 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31590 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48508 * 109.46754 * 180.27158 * 3 2 1 5 5 H 1.48500 * 109.46950 * 300.26759 * 3 2 1 6 6 H 1.48493 * 109.47725 * 60.27093 * 3 2 1 7 7 C 1.38635 * 120.00030 * 180.26793 * 2 1 3 8 8 H 1.07999 * 119.99955 * 179.72962 * 7 2 1 9 9 O 1.34924 * 119.99732 * 359.72697 * 7 2 1 10 10 C 1.42903 * 116.99856 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.72591 * 29.30375 * 10 9 7 12 12 C 1.54343 * 110.82214 * 152.70633 * 10 9 7 13 13 C 1.51368 * 105.17401 * 144.57480 * 12 10 9 14 14 C 1.38513 * 130.38734 * 162.85627 * 13 12 10 15 15 C 1.38084 * 120.23215 * 180.02562 * 14 13 12 16 16 C 1.38337 * 119.92663 * 359.90967 * 15 14 13 17 17 Br 1.89102 * 120.04486 * 180.02562 * 16 15 14 18 18 C 1.38200 * 119.91268 * 0.03078 * 16 15 14 19 19 C 1.38231 * 109.75279 * 342.81907 * 13 12 10 20 20 C 1.51677 * 109.83977 * 0.15205 * 19 13 12 21 21 H 0.97000 * 119.99711 * 359.73325 * 1 2 3 22 22 H 1.09002 * 110.30211 * 263.49517 * 12 10 9 23 23 H 1.09000 * 110.30642 * 25.54893 * 12 10 9 24 24 H 1.08002 * 119.87868 * 359.94374 * 14 13 12 25 25 H 1.08000 * 120.03364 * 179.97438 * 15 14 13 26 26 H 1.07998 * 119.89744 * 179.97438 * 18 16 15 27 27 H 1.08994 * 110.25224 * 258.11446 * 20 19 13 28 28 H 1.08995 * 110.49584 * 135.86207 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7099 1.3464 -0.0066 5 1 1.8861 2.3993 -1.2092 6 1 1.8961 2.3937 1.2157 7 6 2.0091 -1.2006 -0.0056 8 1 3.0891 -1.2006 -0.0100 9 8 1.3344 -2.3691 -0.0055 10 6 2.1127 -3.5675 -0.0120 11 1 3.0706 -3.4081 0.4830 12 6 1.3393 -4.7276 0.6501 13 6 1.7322 -5.9628 -0.1316 14 6 1.6087 -7.3047 0.1889 15 6 2.0442 -8.2732 -0.6937 16 6 2.6044 -7.9031 -1.9032 17 35 3.2014 -9.2267 -3.1146 18 6 2.7273 -6.5647 -2.2250 19 6 2.2924 -5.5925 -1.3399 20 6 2.3185 -4.0802 -1.4532 21 1 -0.4850 0.8401 0.0039 22 1 1.6340 -4.8312 1.6943 23 1 0.2653 -4.5571 0.5760 24 1 1.1713 -7.5943 1.1329 25 1 1.9467 -9.3186 -0.4404 26 1 3.1651 -6.2760 -3.1691 27 1 1.5086 -3.7360 -2.0963 28 1 3.2798 -3.7432 -1.8409 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378932.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:22 Heat of formation + Delta-G solvation = -12.667666 kcal Electronic energy + Delta-G solvation = -13948.134264 eV Core-core repulsion = 11396.407187 eV Total energy + Delta-G solvation = -2551.727077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.000 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93670 -36.80640 -34.30465 -31.87881 -31.51502 -30.43547 -27.58710 -26.78725 -24.49334 -22.20251 -20.61525 -20.24009 -17.75956 -16.16606 -15.66121 -15.39095 -14.80343 -14.29821 -13.48521 -13.37920 -13.21102 -12.64016 -12.44642 -12.28988 -12.06302 -11.35774 -11.09179 -10.97083 -10.83182 -10.77590 -10.33972 -10.32791 -10.13382 -9.64606 -9.22112 -8.76365 -8.27519 -8.05360 -6.01143 -3.65570 1.18092 1.38335 1.60114 3.27567 3.31206 3.35426 3.68278 4.24161 4.61449 4.85634 4.96458 5.26719 5.30200 5.39995 5.46044 5.52423 5.77044 5.91856 5.98037 6.21522 6.23541 6.27469 6.38065 6.53460 6.67171 6.76538 6.79580 6.93367 7.42864 8.36951 9.42378 10.07516 11.19471 Molecular weight = 282.00amu Principal moments of inertia in cm(-1) A = 0.049278 B = 0.003618 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.066597 B = 7737.678529 C = 8117.471725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.024 3.976 3 Si 0.925 3.075 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.364 4.364 8 H 0.065 0.935 9 O -0.277 6.277 10 C 0.102 3.898 11 H 0.055 0.945 12 C -0.084 4.084 13 C -0.069 4.069 14 C -0.105 4.105 15 C -0.098 4.098 16 C -0.095 4.095 17 Br -0.063 7.063 18 C -0.083 4.083 19 C -0.079 4.079 20 C -0.107 4.107 21 H 0.258 0.742 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 -18.433 -3.764 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.443 4.443 8 H 0.083 0.917 9 O -0.192 6.192 10 C 0.042 3.958 11 H 0.073 0.927 12 C -0.121 4.121 13 C -0.070 4.070 14 C -0.124 4.124 15 C -0.118 4.118 16 C -0.174 4.174 17 Br 0.022 6.978 18 C -0.103 4.103 19 C -0.080 4.080 20 C -0.144 4.144 21 H 0.068 0.932 22 H 0.095 0.905 23 H 0.114 0.886 24 H 0.146 0.854 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.111 0.889 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.845 -18.813 -4.221 20.147 hybrid contribution 0.561 0.999 0.152 1.156 sum 6.406 -17.814 -4.069 19.363 Atomic orbital electron populations 1.70030 1.05406 1.25939 1.51623 1.24962 0.95671 0.97780 0.99051 0.85901 0.78852 0.82303 0.77767 1.19875 1.20854 1.20844 1.20920 0.90248 0.82518 1.50571 0.91703 1.85703 1.31140 1.10136 1.92195 1.22326 0.94046 0.87523 0.91915 0.92734 1.21175 1.02571 0.89975 0.98418 1.20860 0.96024 0.94316 0.95793 1.20612 1.00761 0.91269 0.99779 1.20881 0.98680 0.99757 0.92464 1.21505 1.07059 0.92764 0.96056 1.96649 1.88700 1.52316 1.60154 1.20552 0.99857 0.90152 0.99749 1.20841 0.96760 0.96439 0.93935 1.21865 1.02878 0.88183 1.01483 0.93175 0.90525 0.88616 0.85374 0.85236 0.85431 0.88883 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.68 55.48 0.76 -26.47 15 2 C 0.02 0.69 5.49 -17.51 -0.10 0.59 15 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.36 -10.28 9.82 30.88 0.30 -9.98 15 8 H 0.07 1.73 7.66 -52.49 -0.40 1.33 15 9 O -0.28 -7.57 9.51 -16.49 -0.16 -7.73 15 10 C 0.10 2.13 3.58 -25.32 -0.09 2.04 15 11 H 0.05 1.12 7.86 -51.93 -0.41 0.71 15 12 C -0.08 -1.49 6.52 -26.85 -0.18 -1.66 15 13 C -0.07 -1.09 6.14 -104.20 -0.64 -1.73 15 14 C -0.11 -1.39 10.04 -39.54 -0.40 -1.79 15 15 C -0.10 -1.22 9.79 -39.60 -0.39 -1.61 15 16 C -0.09 -1.26 6.22 -39.56 -0.25 -1.51 15 17 Br -0.06 -0.72 33.70 -68.01 -2.29 -3.02 15 18 C -0.08 -1.20 9.78 -39.51 -0.39 -1.59 15 19 C -0.08 -1.28 6.14 -104.05 -0.64 -1.92 15 20 C -0.11 -1.97 6.55 -26.70 -0.17 -2.15 15 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.10 1.79 8.10 -51.93 -0.42 1.37 15 24 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.13 1.31 8.06 -52.49 -0.42 0.88 15 26 H 0.13 1.67 8.06 -52.49 -0.42 1.24 15 27 H 0.09 1.85 8.10 -51.93 -0.42 1.43 15 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 268.32 15.07 4.04 4.04 Total: -1.00 -30.78 268.32 -8.50 -39.28 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -2.90 Total: -1.39 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.93 Total: -21.29 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.76 Total: -26.47 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.16 Total: -7.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.78 -8.50 -39.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378932.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.612 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds