Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47181 * 2 1 4 4 C 1.53001 * 109.47642 * 119.99880 * 2 1 3 5 5 C 1.53004 * 109.47055 * 296.82770 * 4 2 1 6 6 C 1.50693 * 109.46816 * 184.39024 * 5 4 2 7 7 H 1.08004 * 120.00523 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99997 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00105 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46791 * 90.00346 * 10 8 6 12 12 H 1.48504 * 109.46942 * 210.00214 * 10 8 6 13 13 H 1.48495 * 109.47397 * 330.00486 * 10 8 6 14 14 N 1.46904 * 109.47248 * 240.00124 * 2 1 3 15 15 C 1.46954 * 111.00032 * 186.28338 * 14 2 1 16 16 C 1.53048 * 109.38225 * 176.79720 * 15 14 2 17 17 N 1.46962 * 109.35009 * 58.43608 * 16 15 14 18 18 C 1.46904 * 110.87683 * 300.74720 * 17 16 15 19 19 C 1.53066 * 109.49567 * 299.14087 * 18 17 16 20 20 C 1.53048 * 109.26659 * 297.68501 * 19 18 17 21 21 N 1.46845 * 109.51570 * 300.89624 * 20 19 18 22 22 C 1.46839 * 111.24200 * 61.73167 * 21 20 19 23 23 C 1.53056 * 109.50417 * 179.36242 * 18 17 16 24 24 C 1.46973 * 110.99596 * 62.49003 * 14 2 1 25 25 H 1.09003 * 109.46639 * 299.99668 * 1 2 3 26 26 H 1.09001 * 109.47111 * 59.99949 * 1 2 3 27 27 H 1.08996 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46716 * 56.82010 * 4 2 1 29 29 H 1.08996 * 109.47623 * 176.82075 * 4 2 1 30 30 H 1.09000 * 109.46739 * 304.38534 * 5 4 2 31 31 H 1.08992 * 109.47490 * 64.38827 * 5 4 2 32 32 H 0.97000 * 120.00062 * 179.97438 * 9 8 6 33 33 H 1.08994 * 109.48849 * 296.77259 * 15 14 2 34 34 H 1.09002 * 109.48204 * 56.81147 * 15 14 2 35 35 H 1.09001 * 109.49077 * 178.39412 * 16 15 14 36 36 H 1.09002 * 109.49664 * 298.44351 * 16 15 14 37 37 H 1.00907 * 111.00161 * 176.88614 * 17 16 15 38 38 H 1.08997 * 109.50497 * 177.74525 * 19 18 17 39 39 H 1.09006 * 109.50443 * 57.62226 * 19 18 17 40 40 H 1.08999 * 109.46970 * 180.87556 * 20 19 18 41 41 H 1.09008 * 109.45495 * 60.89898 * 20 19 18 42 42 H 1.00895 * 111.00109 * 185.85957 * 21 20 19 43 43 H 1.08997 * 109.46180 * 58.27854 * 22 21 20 44 44 H 1.08995 * 109.46511 * 178.25485 * 22 21 20 45 45 H 1.09002 * 109.50196 * 182.24537 * 23 18 17 46 46 H 1.08995 * 109.50548 * 302.33739 * 23 18 17 47 47 H 1.08992 * 109.49292 * 63.12597 * 24 14 2 48 48 H 1.09000 * 109.50438 * 303.06558 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0402 -0.7212 1.2492 5 6 1.5964 0.0447 2.4972 6 6 2.1885 -0.6042 3.7217 7 1 2.8179 -1.4759 3.6201 8 6 1.9266 -0.0849 4.9719 9 7 1.1597 0.9763 5.0957 10 14 2.6599 -0.8897 6.4898 11 1 3.9804 -0.2778 6.7853 12 1 1.7504 -0.6866 7.6460 13 1 2.8320 -2.3441 6.2448 14 7 2.0197 -0.6925 -1.1995 15 6 3.4810 -0.8435 -1.1607 16 6 3.9422 -1.6376 -2.3851 17 7 3.5209 -0.9374 -3.6066 18 6 2.0603 -0.7846 -3.6451 19 6 1.4018 -2.1663 -3.6391 20 6 1.8218 -2.9313 -4.8964 21 7 1.4131 -2.1777 -6.0886 22 6 2.0705 -0.8657 -6.1400 23 6 1.6580 -0.0389 -4.9197 24 6 1.5977 0.0076 -2.4209 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6310 -1.7311 1.2782 29 1 3.1286 -0.7708 1.2212 30 1 1.9398 1.0771 2.4311 31 1 0.5088 0.0273 2.5667 32 1 0.9752 1.3414 5.9753 33 1 3.9486 0.1410 -1.1686 34 1 3.7676 -1.3750 -0.2532 35 1 5.0285 -1.7261 -2.3730 36 1 3.4960 -2.6318 -2.3631 37 1 3.8564 -1.4137 -4.4304 38 1 0.3178 -2.0528 -3.6273 39 1 1.7203 -2.7175 -2.7543 40 1 1.3423 -3.9101 -4.9033 41 1 2.9046 -3.0573 -4.9000 42 1 1.5933 -2.7056 -6.9294 43 1 3.1520 -1.0011 -6.1381 44 1 1.7713 -0.3449 -7.0495 45 1 0.5782 0.1095 -4.9290 46 1 2.1588 0.9287 -4.9488 47 1 2.0427 1.0024 -2.4421 48 1 0.5113 0.0948 -2.4335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246597299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = 0.545487 kcal Electronic energy + Delta-G solvation = -23619.688295 eV Core-core repulsion = 20515.596496 eV Total energy + Delta-G solvation = -3104.091799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50564 -37.75170 -35.26587 -33.20922 -32.23784 -31.37925 -30.91414 -28.85361 -27.35537 -25.77737 -24.64424 -23.31099 -22.55045 -21.68402 -20.56420 -19.06409 -18.34650 -17.19686 -16.53977 -16.17733 -15.08664 -14.96078 -14.78724 -14.58594 -14.33554 -14.22697 -14.12450 -13.85279 -13.27443 -12.77793 -12.42147 -12.40864 -12.11888 -11.99935 -11.80798 -11.73713 -11.44276 -11.26051 -11.10014 -11.00060 -10.74554 -10.74255 -10.58863 -10.53912 -10.20854 -10.00259 -9.56332 -9.26062 -8.97698 -8.73460 -8.46693 -8.30815 -7.93440 -5.97212 -3.98949 3.33332 3.39531 3.43089 3.93623 4.08878 4.12300 4.48749 4.58663 4.73382 4.80615 5.02380 5.11913 5.19052 5.21762 5.28718 5.38560 5.40550 5.47718 5.56930 5.61740 5.63481 5.67328 5.77080 5.84127 5.88413 5.92319 6.00262 6.07152 6.12773 6.21747 6.29136 6.37664 6.46028 6.67466 6.75694 6.77462 6.81710 6.98227 7.06928 7.15796 7.25197 7.44915 7.53724 7.72052 7.88249 8.03589 8.47164 9.08264 9.64712 11.14144 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.037134 B = 0.003381 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.843226 B = 8279.490729 C = 8530.775050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.034 0.966 4 C -0.104 4.104 5 C 0.023 3.977 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.532 5.532 15 C 0.052 3.948 16 C 0.057 3.943 17 N -0.680 5.680 18 C 0.119 3.881 19 C -0.136 4.136 20 C 0.056 3.944 21 N -0.690 5.690 22 C 0.058 3.942 23 C -0.105 4.105 24 C 0.067 3.933 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.012 0.988 31 H 0.020 0.980 32 H 0.260 0.740 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.333 0.667 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.340 0.660 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.035 0.965 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -4.797 -22.818 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 H 0.052 0.948 4 C -0.141 4.141 5 C -0.014 4.014 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.257 5.257 15 C -0.076 4.076 16 C -0.072 4.072 17 N -0.313 5.313 18 C 0.028 3.972 19 C -0.175 4.175 20 C -0.073 4.073 21 N -0.321 5.321 22 C -0.072 4.072 23 C -0.143 4.143 24 C -0.062 4.062 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.152 0.848 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.157 0.843 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.409 -4.269 -22.118 22.570 hybrid contribution 1.420 -0.719 0.469 1.660 sum 2.829 -4.989 -21.649 22.396 Atomic orbital electron populations 1.21860 0.94699 1.02040 1.01152 1.21773 0.95530 0.95518 0.89695 0.94754 1.21769 0.99372 0.99458 0.93534 1.19120 0.96799 0.95053 0.90470 1.21264 1.30056 1.12917 0.91425 0.92801 1.25020 0.95308 0.95070 0.99077 1.69965 1.37562 1.22559 1.23464 0.86620 0.78963 0.79820 0.82753 1.20738 1.21256 1.19888 1.62234 1.10847 1.50724 1.01863 1.22210 0.88213 0.99411 0.97749 1.22035 0.99368 0.95957 0.89828 1.60792 1.10990 1.54911 1.04589 1.20919 0.87045 0.94564 0.94686 1.22146 1.01960 0.96708 0.96731 1.21978 0.97209 0.97139 0.91003 1.60263 1.62138 1.04739 1.04989 1.21918 0.95907 0.90413 0.98914 1.21607 1.01843 0.98334 0.92536 1.22133 1.00251 0.94989 0.88785 0.91190 0.93975 0.92331 0.92751 0.93244 0.96964 0.96185 0.93071 0.94486 0.89345 0.90866 0.94059 0.84771 0.90864 0.89846 0.90856 0.95898 0.84308 0.95055 0.90789 0.90661 0.90884 0.94638 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.75 37.16 0.33 -2.02 16 2 C 0.08 1.46 2.16 -67.71 -0.15 1.31 16 3 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.10 -2.16 4.32 -26.73 -0.12 -2.27 16 5 C 0.02 0.60 4.57 -27.88 -0.13 0.47 16 6 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 7 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.53 -8.05 3.95 -226.52 -0.89 -8.95 16 15 C 0.05 0.76 5.17 -3.77 -0.02 0.74 16 16 C 0.06 0.68 6.34 -3.77 -0.02 0.66 16 17 N -0.68 -7.57 6.26 -99.84 -0.62 -8.19 16 18 C 0.12 1.33 0.66 -131.55 -0.09 1.25 16 19 C -0.14 -1.51 4.43 -26.67 -0.12 -1.63 16 20 C 0.06 0.51 6.32 -3.83 -0.02 0.49 16 21 N -0.69 -5.82 6.84 -113.81 -0.78 -6.60 16 22 C 0.06 0.48 6.32 -3.83 -0.02 0.45 16 23 C -0.10 -1.02 5.08 -26.67 -0.14 -1.16 16 24 C 0.07 0.90 4.08 -3.80 -0.02 0.88 16 25 H 0.07 1.29 6.61 -51.93 -0.34 0.95 16 26 H 0.04 0.61 6.39 -51.93 -0.33 0.28 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.02 6.07 -51.93 -0.32 0.71 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.54 6.74 -51.93 -0.35 0.19 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.36 5.95 -51.93 -0.31 1.05 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.50 6.30 -51.93 -0.33 0.17 16 37 H 0.33 3.30 5.42 -39.29 -0.21 3.08 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.06 5.91 -51.93 -0.31 0.75 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.02 0.20 6.81 -51.92 -0.35 -0.15 16 42 H 0.34 2.25 8.90 -39.29 -0.35 1.90 16 43 H 0.03 0.25 6.66 -51.93 -0.35 -0.09 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.08 1.05 6.22 -51.93 -0.32 0.73 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -29.68 345.70 -10.78 -40.46 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.48 Total: 2.03 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.92 Total: -14.42 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -1.56 Total: -50.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.68 -10.78 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246597299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.007 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds