Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46900 * 2 1 4 4 C 1.53003 * 109.46871 * 240.00558 * 2 1 3 5 5 C 1.53004 * 109.46796 * 173.95715 * 4 2 1 6 6 C 1.50696 * 109.47066 * 186.18792 * 5 4 2 7 7 H 1.08003 * 119.99948 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00308 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99567 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99970 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47185 * 90.00294 * 10 8 6 12 12 H 1.48503 * 109.46824 * 209.99801 * 10 8 6 13 13 H 1.48495 * 109.47462 * 330.00080 * 10 8 6 14 14 N 1.46897 * 109.47300 * 120.00154 * 2 1 3 15 15 C 1.46337 * 110.99868 * 80.90429 * 14 2 1 16 16 C 1.53488 * 107.54750 * 186.50620 * 15 14 2 17 17 N 1.46329 * 107.59627 * 296.88035 * 16 15 14 18 18 C 1.46971 * 113.38004 * 60.82952 * 17 16 15 19 19 H 1.09007 * 111.01301 * 71.24871 * 18 17 16 20 20 C 1.54225 * 105.46522 * 190.67733 * 18 17 16 21 21 C 1.53241 * 109.98077 * 177.43589 * 20 18 17 22 22 N 1.48196 * 107.40168 * 282.85722 * 21 20 18 23 23 C 1.47482 * 108.26510 * 107.53183 * 22 21 20 24 24 C 1.52503 * 109.69026 * 302.61348 * 23 22 21 25 25 C 1.46953 * 110.99833 * 207.96557 * 14 2 1 26 26 H 1.09004 * 111.00872 * 305.56065 * 25 14 2 27 27 H 1.08994 * 109.47129 * 304.87561 * 1 2 3 28 28 H 1.09001 * 109.47304 * 64.88189 * 1 2 3 29 29 H 1.09004 * 109.46861 * 184.88168 * 1 2 3 30 30 H 1.09002 * 109.46812 * 293.95030 * 4 2 1 31 31 H 1.08995 * 109.47451 * 53.95975 * 4 2 1 32 32 H 1.08999 * 109.46933 * 306.18515 * 5 4 2 33 33 H 1.09003 * 109.47405 * 66.18713 * 5 4 2 34 34 H 0.97005 * 119.99719 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.84142 * 306.01411 * 15 14 2 36 36 H 1.08994 * 109.84414 * 66.92896 * 15 14 2 37 37 H 1.09001 * 109.83697 * 56.41203 * 16 15 14 38 38 H 1.09002 * 109.83225 * 177.35693 * 16 15 14 39 39 H 1.00900 * 110.99938 * 295.08536 * 17 16 15 40 40 H 1.08998 * 109.38146 * 57.27990 * 20 18 17 41 41 H 1.08993 * 109.29653 * 297.54112 * 20 18 17 42 42 H 1.09002 * 109.87231 * 163.38597 * 21 20 18 43 43 H 1.09001 * 109.87403 * 42.33011 * 21 20 18 44 44 H 1.00909 * 111.00071 * 229.59243 * 22 21 20 45 45 H 1.08997 * 109.43041 * 62.66535 * 23 22 21 46 46 H 1.09000 * 109.42741 * 182.55925 * 23 22 21 47 47 H 1.09003 * 109.15325 * 90.11299 * 24 23 22 48 48 H 1.08997 * 109.15282 * 209.27902 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5624 -0.5910 -1.3276 6 6 4.0495 -1.1676 -2.6318 7 1 3.3437 -1.5848 -3.3349 8 6 5.3961 -1.1617 -2.9282 9 7 6.2553 -0.6522 -2.0728 10 14 5.9997 -1.8758 -4.5452 11 1 6.0209 -0.8106 -5.5797 12 1 7.3703 -2.4186 -4.3656 13 1 5.0881 -2.9660 -4.9760 14 7 2.0197 -0.6925 1.1994 15 6 1.9909 -2.1440 1.0153 16 6 2.3576 -2.7882 2.3594 17 7 3.7261 -2.3848 2.6845 18 6 3.8882 -0.9307 2.8229 19 1 3.4101 -0.5689 3.7333 20 6 5.4103 -0.6908 2.8873 21 6 5.7007 0.8116 2.9689 22 7 5.5238 1.3718 1.6084 23 6 4.2802 2.1646 1.5930 24 6 3.1054 1.2857 2.0090 25 6 3.3377 -0.1816 1.6012 26 1 4.0465 -0.2364 0.7750 27 1 -0.3633 0.5876 0.8430 28 1 -0.3634 0.4362 -0.9305 29 1 -0.3633 -1.0240 0.0875 30 1 1.7677 -1.7753 -1.1969 31 1 1.5910 -0.2735 -2.1360 32 1 3.8405 0.4613 -1.2692 33 1 4.0166 -1.1334 -0.4983 34 1 7.2027 -0.6484 -2.2811 35 1 0.9917 -2.4590 0.7145 36 1 2.7152 -2.4349 0.2546 37 1 1.6752 -2.4402 3.1348 38 1 2.3017 -3.8737 2.2766 39 1 4.3821 -2.7598 2.0159 40 1 5.8794 -1.1020 1.9934 41 1 5.8160 -1.1863 3.7693 42 1 6.7246 0.9733 3.3059 43 1 5.0033 1.2868 3.6588 44 1 6.3165 1.9376 1.3444 45 1 4.3733 2.9985 2.2887 46 1 4.1076 2.5487 0.5877 47 1 2.9824 1.3414 3.0906 48 1 2.1980 1.6503 1.5276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246617634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = 19.560918 kcal Electronic energy + Delta-G solvation = -25132.634679 eV Core-core repulsion = 22029.367451 eV Total energy + Delta-G solvation = -3103.267228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.02359 -36.97311 -35.51981 -33.04604 -31.64504 -31.50478 -29.94860 -29.30005 -26.43595 -24.99986 -24.13948 -23.82507 -21.40097 -21.24942 -20.11294 -19.47253 -18.66410 -16.59391 -16.15754 -15.46014 -15.08743 -14.74827 -14.64697 -14.41665 -14.17994 -13.81463 -13.44360 -12.89850 -12.60447 -12.40220 -12.28528 -12.18131 -11.83281 -11.55959 -11.45352 -11.41122 -11.12550 -10.98600 -10.86281 -10.73864 -10.55275 -10.47095 -10.46872 -10.39080 -10.08588 -9.86792 -9.54292 -9.14049 -9.04914 -8.27528 -8.09370 -7.90910 -7.27716 -5.91082 -3.94442 3.32899 3.39664 3.42912 4.34695 4.49897 4.52413 4.74357 5.18412 5.24069 5.36403 5.41738 5.48573 5.54931 5.57911 5.65596 5.72473 5.78934 5.84720 5.86489 5.90978 5.97853 6.01003 6.02487 6.13091 6.19358 6.24481 6.29145 6.38652 6.43251 6.49296 6.55174 6.59837 6.68177 6.71382 6.87301 7.08062 7.18770 7.32772 7.51314 7.68172 7.73771 7.78538 7.82064 7.89670 7.91808 8.05983 8.51148 9.10948 9.68299 11.16913 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.007337 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.047220 B = 3815.309237 C = 4467.687290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 H 0.075 0.925 4 C -0.143 4.143 5 C 0.028 3.972 6 C -0.525 4.525 7 H 0.049 0.951 8 C 0.062 3.938 9 N -0.879 5.879 10 Si 0.883 3.117 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.276 1.276 14 N -0.536 5.536 15 C 0.015 3.985 16 C 0.067 3.933 17 N -0.698 5.698 18 C 0.111 3.889 19 H 0.073 0.927 20 C -0.112 4.112 21 C 0.049 3.951 22 N -0.659 5.659 23 C 0.052 3.948 24 C -0.111 4.111 25 C 0.045 3.955 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.014 0.986 33 H 0.024 0.976 34 H 0.257 0.743 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.344 0.656 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.338 0.662 45 H 0.022 0.978 46 H 0.071 0.929 47 H 0.050 0.950 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 2.661 10.940 12.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 H 0.093 0.907 4 C -0.182 4.182 5 C -0.008 4.008 6 C -0.563 4.563 7 H 0.067 0.933 8 C -0.140 4.140 9 N -0.517 5.517 10 Si 0.711 3.289 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.261 5.261 15 C -0.115 4.115 16 C -0.063 4.063 17 N -0.328 5.328 18 C 0.001 3.999 19 H 0.091 0.909 20 C -0.151 4.151 21 C -0.081 4.081 22 N -0.288 5.288 23 C -0.078 4.078 24 C -0.150 4.150 25 C -0.064 4.064 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.162 0.838 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.154 0.846 45 H 0.040 0.960 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.603 2.108 11.737 13.176 hybrid contribution 1.086 0.586 -2.098 2.434 sum -4.517 2.694 9.639 10.980 Atomic orbital electron populations 1.21764 0.95887 1.01197 1.00390 1.21815 0.94021 0.98367 0.89160 0.90680 1.22368 1.00709 0.99214 0.95894 1.19216 0.88079 0.96964 0.96588 1.21245 0.92053 1.39533 1.03511 0.93309 1.24971 0.97091 0.95564 0.96403 1.70000 1.01943 1.45011 1.34761 0.86755 0.78066 0.79375 0.84715 1.20887 1.21322 1.20137 1.61656 1.26226 1.04074 1.34113 1.22850 1.01479 0.89196 0.97951 1.21994 0.90130 0.98578 0.95573 1.59930 1.06281 1.11647 1.54910 1.21995 0.95193 0.86292 0.96456 0.90912 1.22056 0.95172 0.95540 1.02360 1.22343 0.99526 0.96013 0.90230 1.61987 1.04435 1.37961 1.24418 1.22108 0.91216 0.93873 1.00558 1.21978 0.97415 0.95636 0.99977 1.23081 0.90847 0.92623 0.99842 0.86295 0.93208 0.93100 0.93248 0.93132 0.93421 0.96764 0.95775 0.93307 0.91418 0.92753 0.90965 0.91153 0.83785 0.90280 0.92081 0.92671 0.93271 0.84587 0.96014 0.91057 0.93119 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.41 37.16 0.35 -1.65 16 2 C 0.07 1.30 2.00 -67.71 -0.14 1.17 16 3 H 0.08 1.37 5.80 -51.92 -0.30 1.07 16 4 C -0.14 -2.98 4.10 -26.73 -0.11 -3.09 16 5 C 0.03 0.70 3.32 -27.88 -0.09 0.61 16 6 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 7 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.88 -25.48 13.29 55.43 0.74 -24.74 16 10 Si 0.88 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 N -0.54 -9.01 4.00 -217.86 -0.87 -9.88 16 15 C 0.01 0.25 4.17 -3.88 -0.02 0.23 16 16 C 0.07 0.99 6.82 -3.88 -0.03 0.97 16 17 N -0.70 -10.89 6.37 -105.86 -0.67 -11.56 16 18 C 0.11 1.73 2.80 -66.77 -0.19 1.54 16 19 H 0.07 1.14 7.45 -51.93 -0.39 0.75 16 20 C -0.11 -1.69 4.97 -25.97 -0.13 -1.82 16 21 C 0.05 0.67 6.15 -2.98 -0.02 0.65 16 22 N -0.66 -10.40 5.65 -112.49 -0.64 -11.04 16 23 C 0.05 0.78 6.28 -3.76 -0.02 0.76 16 24 C -0.11 -1.70 4.58 -26.44 -0.12 -1.83 16 25 C 0.04 0.77 1.34 -66.87 -0.09 0.68 16 26 H 0.12 2.50 3.35 -51.93 -0.17 2.33 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.72 7.02 -51.93 -0.36 0.36 16 30 H 0.05 1.06 6.07 -51.93 -0.32 0.74 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.01 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.02 0.64 4.63 -51.93 -0.24 0.40 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.07 1.07 6.88 -51.93 -0.36 0.71 16 36 H 0.05 1.08 5.44 -51.93 -0.28 0.80 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.34 5.75 8.33 -39.29 -0.33 5.42 16 40 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.63 6.52 -51.93 -0.34 0.29 16 44 H 0.34 5.02 8.91 -39.29 -0.35 4.67 16 45 H 0.02 0.28 8.13 -51.93 -0.42 -0.14 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.72 6.63 -51.93 -0.34 0.38 16 48 H 0.07 1.12 5.74 -51.93 -0.30 0.82 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -28.43 338.74 -10.63 -39.06 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -8.26 Total: 11.62 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.01 Total: -15.25 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -1.44 Total: -57.23 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.43 -10.63 -39.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246617634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.618 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds