Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46900 * 2 1 4 4 C 1.53003 * 109.46871 * 240.00558 * 2 1 3 5 5 C 1.53004 * 109.46796 * 173.95715 * 4 2 1 6 6 C 1.50696 * 109.47066 * 186.18792 * 5 4 2 7 7 H 1.08003 * 119.99948 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00308 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99567 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99970 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47185 * 90.00294 * 10 8 6 12 12 H 1.48503 * 109.46824 * 209.99801 * 10 8 6 13 13 H 1.48495 * 109.47462 * 330.00080 * 10 8 6 14 14 N 1.46897 * 109.47300 * 120.00154 * 2 1 3 15 15 C 1.46337 * 110.99868 * 80.90429 * 14 2 1 16 16 C 1.53488 * 107.54750 * 186.50620 * 15 14 2 17 17 N 1.46329 * 107.59627 * 296.88035 * 16 15 14 18 18 C 1.46971 * 113.38004 * 60.82952 * 17 16 15 19 19 H 1.09007 * 111.01301 * 71.24871 * 18 17 16 20 20 C 1.54225 * 105.46522 * 190.67733 * 18 17 16 21 21 C 1.53241 * 109.98077 * 177.43589 * 20 18 17 22 22 N 1.48196 * 107.40168 * 282.85722 * 21 20 18 23 23 C 1.47482 * 108.26510 * 107.53183 * 22 21 20 24 24 C 1.52503 * 109.69026 * 302.61348 * 23 22 21 25 25 C 1.46953 * 110.99833 * 207.96557 * 14 2 1 26 26 H 1.09004 * 111.00872 * 305.56065 * 25 14 2 27 27 H 1.08994 * 109.47129 * 304.87561 * 1 2 3 28 28 H 1.09001 * 109.47304 * 64.88189 * 1 2 3 29 29 H 1.09004 * 109.46861 * 184.88168 * 1 2 3 30 30 H 1.09002 * 109.46812 * 293.95030 * 4 2 1 31 31 H 1.08995 * 109.47451 * 53.95975 * 4 2 1 32 32 H 1.08999 * 109.46933 * 306.18515 * 5 4 2 33 33 H 1.09003 * 109.47405 * 66.18713 * 5 4 2 34 34 H 0.97005 * 119.99719 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.84142 * 306.01411 * 15 14 2 36 36 H 1.08994 * 109.84414 * 66.92896 * 15 14 2 37 37 H 1.09001 * 109.83697 * 56.41203 * 16 15 14 38 38 H 1.09002 * 109.83225 * 177.35693 * 16 15 14 39 39 H 1.00900 * 110.99938 * 295.08536 * 17 16 15 40 40 H 1.08998 * 109.38146 * 57.27990 * 20 18 17 41 41 H 1.08993 * 109.29653 * 297.54112 * 20 18 17 42 42 H 1.09002 * 109.87231 * 163.38597 * 21 20 18 43 43 H 1.09001 * 109.87403 * 42.33011 * 21 20 18 44 44 H 1.00909 * 111.00071 * 229.59243 * 22 21 20 45 45 H 1.08997 * 109.43041 * 62.66535 * 23 22 21 46 46 H 1.09000 * 109.42741 * 182.55925 * 23 22 21 47 47 H 1.09003 * 109.15325 * 90.11299 * 24 23 22 48 48 H 1.08997 * 109.15282 * 209.27902 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5624 -0.5910 -1.3276 6 6 4.0495 -1.1676 -2.6318 7 1 3.3437 -1.5848 -3.3349 8 6 5.3961 -1.1617 -2.9282 9 7 6.2553 -0.6522 -2.0728 10 14 5.9997 -1.8758 -4.5452 11 1 6.0209 -0.8106 -5.5797 12 1 7.3703 -2.4186 -4.3656 13 1 5.0881 -2.9660 -4.9760 14 7 2.0197 -0.6925 1.1994 15 6 1.9909 -2.1440 1.0153 16 6 2.3576 -2.7882 2.3594 17 7 3.7261 -2.3848 2.6845 18 6 3.8882 -0.9307 2.8229 19 1 3.4101 -0.5689 3.7333 20 6 5.4103 -0.6908 2.8873 21 6 5.7007 0.8116 2.9689 22 7 5.5238 1.3718 1.6084 23 6 4.2802 2.1646 1.5930 24 6 3.1054 1.2857 2.0090 25 6 3.3377 -0.1816 1.6012 26 1 4.0465 -0.2364 0.7750 27 1 -0.3633 0.5876 0.8430 28 1 -0.3634 0.4362 -0.9305 29 1 -0.3633 -1.0240 0.0875 30 1 1.7677 -1.7753 -1.1969 31 1 1.5910 -0.2735 -2.1360 32 1 3.8405 0.4613 -1.2692 33 1 4.0166 -1.1334 -0.4983 34 1 7.2027 -0.6484 -2.2811 35 1 0.9917 -2.4590 0.7145 36 1 2.7152 -2.4349 0.2546 37 1 1.6752 -2.4402 3.1348 38 1 2.3017 -3.8737 2.2766 39 1 4.3821 -2.7598 2.0159 40 1 5.8794 -1.1020 1.9934 41 1 5.8160 -1.1863 3.7693 42 1 6.7246 0.9733 3.3059 43 1 5.0033 1.2868 3.6588 44 1 6.3165 1.9376 1.3444 45 1 4.3733 2.9985 2.2887 46 1 4.1076 2.5487 0.5877 47 1 2.9824 1.3414 3.0906 48 1 2.1980 1.6503 1.5276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246617634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -1.039811 kcal Electronic energy + Delta-G solvation = -25133.527994 eV Core-core repulsion = 22029.367451 eV Total energy + Delta-G solvation = -3104.160543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37005 -38.29826 -36.85875 -35.09105 -33.07433 -32.78003 -31.56160 -30.78001 -27.70038 -26.92554 -25.37815 -25.19733 -23.16291 -22.53814 -21.36370 -20.92398 -20.12979 -18.29201 -17.85250 -16.81312 -16.53636 -16.42137 -15.97190 -15.88610 -15.59658 -15.12700 -14.83431 -14.38189 -14.27020 -13.84424 -13.68478 -13.46952 -13.28045 -13.11847 -13.04549 -12.85650 -12.67006 -12.62502 -12.38768 -12.25539 -12.06790 -11.91871 -11.87849 -11.68362 -11.55873 -11.24940 -11.14826 -11.06384 -10.95733 -10.46339 -9.33918 -9.16852 -8.73404 -8.09679 -6.22152 1.36135 1.36612 1.46792 2.40963 3.00408 3.18499 3.31487 3.52824 3.93680 4.01666 4.04906 4.24328 4.27592 4.31811 4.38161 4.44389 4.46599 4.50884 4.58955 4.67459 4.73455 4.76486 4.78970 4.81977 4.87923 4.91325 4.98917 5.03822 5.10434 5.15078 5.19886 5.24433 5.28950 5.32357 5.43183 5.44420 5.55945 5.65358 5.86216 5.93741 6.18089 6.26698 6.31465 6.32878 6.45563 6.51709 6.61070 6.92429 7.44395 8.96520 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.007337 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.047220 B = 3815.309237 C = 4467.687290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.079 3.921 3 H 0.065 0.935 4 C -0.133 4.133 5 C 0.050 3.950 6 C -0.554 4.554 7 H 0.043 0.957 8 C 0.014 3.986 9 N -0.903 5.903 10 Si 0.947 3.053 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.271 1.271 14 N -0.524 5.524 15 C 0.018 3.982 16 C 0.073 3.927 17 N -0.696 5.696 18 C 0.114 3.886 19 H 0.085 0.915 20 C -0.105 4.105 21 C 0.055 3.945 22 N -0.686 5.686 23 C 0.057 3.943 24 C -0.106 4.106 25 C 0.045 3.955 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.040 0.960 32 H -0.019 1.019 33 H 0.008 0.992 34 H 0.259 0.741 35 H 0.079 0.921 36 H 0.016 0.984 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.333 0.667 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.339 0.661 45 H 0.048 0.952 46 H 0.046 0.954 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 2.591 12.143 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.029 4.029 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.014 3.986 6 C -0.592 4.592 7 H 0.062 0.938 8 C -0.186 4.186 9 N -0.541 5.541 10 Si 0.773 3.227 11 H -0.202 1.202 12 H -0.206 1.206 13 H -0.196 1.196 14 N -0.249 5.249 15 C -0.112 4.112 16 C -0.056 4.056 17 N -0.325 5.325 18 C 0.004 3.996 19 H 0.103 0.897 20 C -0.144 4.144 21 C -0.075 4.075 22 N -0.316 5.316 23 C -0.073 4.073 24 C -0.145 4.145 25 C -0.065 4.065 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.059 0.941 32 H -0.001 1.001 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.156 0.844 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.600 2.042 12.946 14.675 hybrid contribution 1.429 0.596 -2.496 2.937 sum -5.171 2.637 10.451 11.955 Atomic orbital electron populations 1.21675 0.93108 1.01950 1.01552 1.21774 0.96080 0.97312 0.87740 0.91642 1.22238 0.97694 0.99594 0.97645 1.18922 0.90845 0.94086 0.94788 1.21653 0.92584 1.40175 1.04762 0.93835 1.25750 0.97249 0.95815 0.99814 1.70131 1.02131 1.45491 1.36362 0.85729 0.77623 0.78778 0.80551 1.20185 1.20645 1.19576 1.61820 1.25863 1.04104 1.33083 1.22838 1.00954 0.89226 0.98197 1.22038 0.89680 0.99462 0.94449 1.59996 1.06543 1.11638 1.54287 1.22005 0.95474 0.86117 0.95959 0.89681 1.21982 0.94628 0.96721 1.01096 1.22347 1.01020 0.94742 0.89396 1.61934 1.04813 1.38645 1.26200 1.22037 0.90882 0.94480 0.99855 1.21931 0.97330 0.94286 1.00918 1.22955 0.90026 0.94313 0.99187 0.90391 0.91550 0.92384 0.92736 0.93269 0.94079 1.00105 0.97398 0.93211 0.90252 0.96626 0.89830 0.89530 0.84922 0.94133 0.90477 0.90991 0.91603 0.84426 0.93345 0.93516 0.91274 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.41 71.98 0.68 -2.80 16 2 C 0.08 2.77 2.00 44.92 0.09 2.86 16 3 H 0.07 2.42 5.80 -2.38 -0.01 2.41 16 4 C -0.13 -5.69 4.10 30.60 0.13 -5.56 16 5 C 0.05 2.64 3.32 29.85 0.10 2.74 16 6 C -0.55 -32.25 9.11 25.60 0.23 -32.02 16 7 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16 8 C 0.01 0.79 5.46 84.66 0.46 1.25 16 9 N -0.90 -53.94 13.29 21.45 0.28 -53.66 16 10 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 14 N -0.52 -17.34 4.00 -843.19 -3.37 -20.71 16 15 C 0.02 0.58 4.17 86.57 0.36 0.94 16 16 C 0.07 2.06 6.82 86.58 0.59 2.65 16 17 N -0.70 -21.26 6.37 -488.82 -3.12 -24.37 16 18 C 0.11 3.47 2.80 45.49 0.13 3.60 16 19 H 0.09 2.42 7.45 -2.38 -0.02 2.41 16 20 C -0.11 -3.13 4.97 31.09 0.15 -2.98 16 21 C 0.05 1.43 6.15 86.13 0.53 1.96 16 22 N -0.69 -22.01 5.65 -509.81 -2.88 -24.88 16 23 C 0.06 1.70 6.28 86.03 0.54 2.24 16 24 C -0.11 -3.15 4.58 30.79 0.14 -3.00 16 25 C 0.04 1.52 1.34 45.43 0.06 1.58 16 26 H 0.08 3.43 3.35 -2.39 -0.01 3.43 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.46 7.02 -2.38 -0.02 1.44 16 30 H 0.05 2.10 6.07 -2.39 -0.01 2.08 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H -0.02 -1.14 8.08 -2.39 -0.02 -1.16 16 33 H 0.01 0.45 4.63 -2.39 -0.01 0.44 16 34 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 35 H 0.08 2.41 6.88 -2.39 -0.02 2.39 16 36 H 0.02 0.64 5.44 -2.39 -0.01 0.63 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.33 11.42 8.33 -89.69 -0.75 10.67 16 40 H 0.04 1.52 7.93 -2.39 -0.02 1.50 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 1.51 6.52 -2.39 -0.02 1.50 16 44 H 0.34 10.34 8.91 -89.69 -0.80 9.54 16 45 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 1.79 6.63 -2.39 -0.02 1.78 16 48 H 0.07 2.07 5.74 -2.39 -0.01 2.06 16 Total: -1.00 -62.76 338.74 -3.45 -66.21 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.59 Total: 36.75 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.19 Total: -26.53 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -9.08 Total: -123.62 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -62.76 -3.45 -66.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246617634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.170 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds