Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47071 * 2 1 4 4 H 1.08992 * 109.47267 * 319.43057 * 3 2 1 5 5 C 1.50702 * 109.46577 * 199.42736 * 3 2 1 6 6 H 1.08003 * 120.00248 * 273.33101 * 5 3 2 7 7 C 1.37881 * 119.99907 * 93.33569 * 5 3 2 8 8 N 1.31514 * 120.00013 * 185.55789 * 7 5 3 9 9 Si 1.86801 * 119.99754 * 5.56337 * 7 5 3 10 10 H 1.48494 * 109.47397 * 86.29626 * 9 7 5 11 11 H 1.48504 * 109.46718 * 206.29377 * 9 7 5 12 12 H 1.48495 * 109.47125 * 326.29100 * 9 7 5 13 13 N 1.45857 * 109.46809 * 79.43288 * 3 2 1 14 14 C 1.46368 * 113.93574 * 307.89061 * 13 3 2 15 15 C 1.50820 * 112.67123 * 190.47887 * 14 13 3 16 16 N 1.47021 * 108.55332 * 85.53620 * 15 14 13 17 17 C 1.39238 * 116.57557 * 274.71874 * 16 15 14 18 18 C 1.54164 * 113.37363 * 65.09341 * 17 16 15 19 19 C 1.53626 * 108.24998 * 173.10335 * 18 17 16 20 20 C 1.52747 * 110.31727 * 297.94212 * 19 18 17 21 21 C 1.53074 * 109.37439 * 303.01747 * 20 19 18 22 22 C 1.52950 * 109.14041 * 57.41086 * 21 20 19 23 23 N 1.46352 * 109.48732 * 54.00395 * 18 17 16 24 24 C 1.46216 * 114.30580 * 167.65727 * 13 3 2 25 25 H 1.08995 * 109.47514 * 167.51005 * 1 2 3 26 26 H 1.08999 * 109.46951 * 287.51110 * 1 2 3 27 27 H 1.08997 * 109.47290 * 47.50811 * 1 2 3 28 28 H 1.09000 * 109.46608 * 239.99945 * 2 1 3 29 29 H 1.08994 * 109.46840 * 120.00506 * 2 1 3 30 30 H 0.96998 * 119.99961 * 179.97438 * 8 7 5 31 31 H 1.09678 * 108.94816 * 70.58307 * 14 13 3 32 32 H 1.08950 * 110.38628 * 312.72400 * 14 13 3 33 33 H 1.09067 * 109.70850 * 325.13036 * 15 14 13 34 34 H 1.09242 * 109.37713 * 205.41752 * 15 14 13 35 35 H 1.00676 * 111.89324 * 45.59007 * 16 15 14 36 36 H 1.09256 * 108.86835 * 186.92764 * 17 16 15 37 37 H 1.09521 * 108.86553 * 304.06004 * 17 16 15 38 38 H 1.09082 * 109.03621 * 58.41639 * 19 18 17 39 39 H 1.09111 * 109.00625 * 177.57570 * 19 18 17 40 40 H 1.09317 * 109.36569 * 183.53858 * 20 19 18 41 41 H 1.08856 * 110.20165 * 63.80826 * 20 19 18 42 42 H 1.08996 * 109.55440 * 297.44699 * 21 20 19 43 43 H 1.09008 * 109.53349 * 177.34058 * 21 20 19 44 44 H 1.09211 * 109.26553 * 181.44806 * 22 21 20 45 45 H 1.08921 * 109.66001 * 61.98737 * 22 21 20 46 46 H 1.00649 * 112.11868 * 293.94294 * 23 18 17 47 47 H 1.09862 * 108.79198 * 329.16006 * 24 13 3 48 48 H 1.09740 * 109.02441 * 213.46445 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4252 2.0452 -0.6683 5 6 3.4707 1.4693 -0.4726 6 1 4.2753 1.3214 0.2326 7 6 3.7526 1.6828 -1.8053 8 7 4.9920 1.5979 -2.2370 9 14 2.3742 2.0928 -2.9975 10 1 2.1318 3.5578 -2.9891 11 1 2.7589 1.6626 -4.3658 12 1 1.1362 1.3838 -2.5854 13 7 1.9642 1.9849 1.3519 14 6 0.6493 1.8380 1.9778 15 6 0.5253 2.6218 3.2604 16 7 0.1255 3.9978 2.9309 17 6 1.1499 4.8836 2.6076 18 6 1.8931 4.5115 1.3092 19 6 2.8713 5.6472 0.9723 20 6 2.1090 6.9472 0.7231 21 6 1.0907 6.7316 -0.3993 22 6 0.1518 5.5882 -0.0118 23 7 0.9277 4.3645 0.2191 24 6 2.6811 3.2460 1.5354 25 1 -0.3634 -1.0033 -0.2222 26 1 -0.3633 0.3092 0.9800 27 1 -0.3634 0.6941 -0.7577 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.1903 1.7477 -3.1747 31 1 0.4812 0.7792 2.2090 32 1 -0.1354 2.1524 1.2905 33 1 1.4819 2.6238 3.7842 34 1 -0.2313 2.1576 3.8971 35 1 -0.6217 4.0203 2.2566 36 1 0.7306 5.8875 2.5078 37 1 1.8724 4.9051 3.4304 38 1 3.5619 5.7809 1.8060 39 1 3.4353 5.3769 0.0783 40 1 2.8126 7.7284 0.4237 41 1 1.5964 7.2623 1.6303 42 1 1.6129 6.4784 -1.3219 43 1 0.5127 7.6440 -0.5473 44 1 -0.5595 5.4155 -0.8224 45 1 -0.3963 5.8540 0.8911 46 1 0.3099 3.5830 0.3628 47 1 3.5436 3.2650 0.8552 48 1 3.0880 3.2812 2.5540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246621132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = 19.657167 kcal Electronic energy + Delta-G solvation = -25596.191588 eV Core-core repulsion = 22492.928534 eV Total energy + Delta-G solvation = -3103.263054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41911 -37.14348 -35.49962 -32.50841 -32.33534 -31.73552 -31.21928 -28.91424 -26.79004 -25.51312 -24.29118 -23.06758 -22.56629 -21.33234 -20.28899 -19.17915 -18.42361 -17.23634 -16.05504 -15.92199 -15.59802 -15.06913 -14.47643 -14.29653 -14.07973 -13.73448 -13.34676 -13.02156 -12.90108 -12.75279 -12.30536 -12.26511 -12.09681 -11.92429 -11.79459 -11.62246 -11.25039 -11.18360 -10.90359 -10.76077 -10.62040 -10.40173 -10.37290 -10.09946 -10.05232 -9.79387 -9.69123 -9.58427 -8.95778 -8.56151 -8.43780 -7.51316 -6.84453 -6.01079 -3.98001 3.40088 3.45743 3.51192 4.36891 4.44650 4.51759 4.66236 5.01021 5.04783 5.09358 5.30344 5.33311 5.37398 5.42777 5.53385 5.60543 5.66417 5.73996 5.78254 5.85152 5.92937 5.97735 6.00970 6.11590 6.12865 6.16457 6.20231 6.22083 6.25243 6.37700 6.42858 6.46586 6.63969 6.70401 6.81700 6.87902 7.02331 7.20163 7.38531 7.47994 7.53403 7.67787 7.76547 7.79285 8.26669 8.45415 8.81525 9.08475 9.65234 11.11342 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.009457 C = 0.007240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.765166 B = 2959.974576 C = 3866.301341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.117 4.117 3 C 0.215 3.785 4 H 0.016 0.984 5 C -0.498 4.498 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.900 5.900 9 Si 0.877 3.123 10 H -0.270 1.270 11 H -0.299 1.299 12 H -0.268 1.268 13 N -0.580 5.580 14 C 0.051 3.949 15 C 0.066 3.934 16 N -0.712 5.712 17 C 0.052 3.948 18 C 0.065 3.935 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.115 4.115 22 C 0.059 3.941 23 N -0.673 5.673 24 C 0.100 3.900 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.261 0.739 31 H 0.070 0.930 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.337 0.663 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.338 0.662 47 H 0.102 0.898 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 7.219 7.666 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.033 0.967 5 C -0.536 4.536 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.539 5.539 9 Si 0.705 3.295 10 H -0.196 1.196 11 H -0.226 1.226 12 H -0.193 1.193 13 N -0.305 5.305 14 C -0.077 4.077 15 C -0.062 4.062 16 N -0.343 5.343 17 C -0.081 4.081 18 C -0.031 4.031 19 C -0.141 4.141 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.070 4.070 23 N -0.308 5.308 24 C -0.028 4.028 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.035 0.965 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.160 0.840 47 H 0.120 0.880 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.246 7.286 7.850 14.149 hybrid contribution -1.569 0.377 -1.355 2.108 sum -10.816 7.663 6.494 14.760 Atomic orbital electron populations 1.22403 0.98933 1.00035 1.01306 1.21870 0.92257 1.00165 1.01314 1.19313 0.96961 0.89798 0.83022 0.96694 1.20885 0.90791 1.48237 0.93664 0.90643 1.24931 0.95047 0.94592 0.98041 1.69914 1.18527 1.49911 1.15507 0.86857 0.83166 0.79782 0.79687 1.19588 1.22573 1.19281 1.56649 1.20491 1.28229 1.25173 1.22372 0.90129 1.00568 0.94651 1.21778 1.01400 0.86287 0.96740 1.55999 1.14163 1.11332 1.52760 1.21519 0.93948 0.95567 0.97100 1.22232 0.93471 0.98046 0.89303 1.21596 0.97185 0.93109 1.02174 1.21490 0.98079 0.97652 0.98204 1.21520 0.97423 0.96889 0.99443 1.21813 0.95004 0.91231 0.98953 1.59551 1.20594 1.04903 1.45722 1.21302 0.97212 0.83353 1.00899 0.94443 0.92212 0.93903 0.92269 0.92511 0.92874 0.91219 0.96462 0.90186 0.90819 0.84156 0.91614 0.91825 0.92052 0.90642 0.92445 0.92487 0.91200 0.92416 0.91838 0.95666 0.84023 0.87953 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.92 37.16 0.33 -2.62 16 2 C -0.12 -2.45 5.08 -26.73 -0.14 -2.59 16 3 C 0.21 4.80 1.35 -69.43 -0.09 4.70 16 4 H 0.02 0.36 3.76 -51.93 -0.20 0.17 16 5 C -0.50 -13.39 6.93 -34.44 -0.24 -13.63 16 6 H 0.08 2.26 7.96 -52.48 -0.42 1.84 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 9 Si 0.88 21.99 27.04 -169.99 -4.60 17.39 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 12 H -0.27 -6.49 6.76 56.52 0.38 -6.11 16 13 N -0.58 -11.16 3.72 -231.62 -0.86 -12.03 16 14 C 0.05 0.81 3.05 -5.21 -0.02 0.79 16 15 C 0.07 0.90 6.22 -4.85 -0.03 0.87 16 16 N -0.71 -9.46 5.96 -119.07 -0.71 -10.17 16 17 C 0.05 0.72 3.99 -7.15 -0.03 0.69 16 18 C 0.07 1.04 0.64 -132.07 -0.09 0.95 16 19 C -0.10 -1.57 4.57 -26.54 -0.12 -1.69 16 20 C -0.12 -1.52 5.62 -26.82 -0.15 -1.67 16 21 C -0.11 -1.55 6.11 -26.72 -0.16 -1.72 16 22 C 0.06 0.84 6.07 -3.94 -0.02 0.81 16 23 N -0.67 -11.30 5.23 -100.60 -0.53 -11.83 16 24 C 0.10 1.89 4.12 -5.30 -0.02 1.87 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.92 4.37 -51.93 -0.23 0.69 16 27 H 0.04 0.78 7.86 -51.93 -0.41 0.37 16 28 H 0.06 1.34 7.98 -51.93 -0.41 0.93 16 29 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.07 1.09 5.91 -51.54 -0.30 0.78 16 32 H 0.02 0.28 4.93 -51.96 -0.26 0.03 16 33 H 0.08 1.17 7.08 -51.89 -0.37 0.80 16 34 H 0.07 0.88 8.16 -51.79 -0.42 0.45 16 35 H 0.34 4.42 6.95 -39.38 -0.27 4.15 16 36 H 0.07 0.88 5.02 -51.78 -0.26 0.62 16 37 H 0.06 0.90 7.84 -51.63 -0.40 0.49 16 38 H 0.06 0.87 8.15 -51.88 -0.42 0.45 16 39 H 0.07 1.39 8.00 -51.87 -0.41 0.98 16 40 H 0.06 0.70 8.17 -51.75 -0.42 0.27 16 41 H 0.06 0.68 6.52 -52.01 -0.34 0.34 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.06 0.87 8.16 -51.81 -0.42 0.45 16 45 H 0.03 0.33 6.24 -51.97 -0.32 0.00 16 46 H 0.34 5.81 4.19 -39.39 -0.17 5.64 16 47 H 0.10 2.34 5.62 -51.44 -0.29 2.05 16 48 H 0.04 0.78 6.98 -51.51 -0.36 0.42 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -28.24 325.68 -9.84 -38.08 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.95 Total: 11.18 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.88 Total: -11.19 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -1.32 Total: -60.37 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.60 Total: 17.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.24 -9.84 -38.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246621132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.735 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds