Wall clock time and date at job start Tue Mar 31 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 109.46674 * 2 1 4 4 H 1.08994 * 109.47350 * 57.25518 * 3 2 1 5 5 C 1.50697 * 109.46694 * 177.25881 * 3 2 1 6 6 H 1.07997 * 120.00282 * 120.00148 * 5 3 2 7 7 C 1.37879 * 120.00180 * 299.99291 * 5 3 2 8 8 N 1.31520 * 119.99793 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00489 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46894 * 59.99886 * 9 7 5 11 11 H 1.48495 * 109.47284 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47056 * 300.00607 * 9 7 5 13 13 N 1.46905 * 109.46969 * 297.25276 * 3 2 1 14 14 C 1.47738 * 111.00082 * 296.47624 * 13 3 2 15 15 C 1.50770 * 108.17647 * 152.28246 * 14 13 3 16 16 N 1.47774 * 111.98399 * 94.57614 * 15 14 13 17 17 C 1.48043 * 113.77854 * 318.83540 * 16 15 14 18 18 C 1.50741 * 112.80650 * 318.34580 * 17 16 15 19 19 C 1.53038 * 110.68468 * 212.19389 * 18 17 16 20 20 C 1.53119 * 109.28432 * 181.27712 * 19 18 17 21 21 C 1.53121 * 109.18809 * 302.35165 * 20 19 18 22 22 C 1.53038 * 109.27250 * 57.60576 * 21 20 19 23 23 N 1.46826 * 109.49783 * 300.80398 * 22 21 20 24 24 C 1.40051 * 110.99628 * 167.95280 * 13 3 2 25 25 H 1.09001 * 109.47716 * 60.00551 * 1 2 3 26 26 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47480 * 300.00100 * 1 2 3 28 28 H 1.08995 * 109.47369 * 240.00414 * 2 1 3 29 29 H 1.08999 * 109.47237 * 119.99639 * 2 1 3 30 30 H 0.96998 * 119.99784 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.72072 * 271.95059 * 14 13 3 32 32 H 1.09007 * 109.72576 * 32.61420 * 14 13 3 33 33 H 1.08998 * 108.97991 * 215.22676 * 15 14 13 34 34 H 1.09005 * 108.97508 * 334.01602 * 15 14 13 35 35 H 1.00901 * 110.99436 * 84.89104 * 16 15 14 36 36 H 1.08997 * 108.81423 * 197.48657 * 17 16 15 37 37 H 1.09000 * 108.81573 * 79.20733 * 17 16 15 38 38 H 1.09006 * 109.50345 * 301.22023 * 19 18 17 39 39 H 1.08998 * 109.50257 * 61.29549 * 19 18 17 40 40 H 1.08996 * 109.51884 * 62.26827 * 20 19 18 41 41 H 1.09000 * 109.51515 * 182.44348 * 20 19 18 42 42 H 1.08999 * 109.50419 * 177.55098 * 21 20 19 43 43 H 1.09004 * 109.50122 * 297.62412 * 21 20 19 44 44 H 1.08995 * 109.46837 * 180.78986 * 22 21 20 45 45 H 1.09004 * 109.46234 * 60.80904 * 22 21 20 46 46 H 1.00910 * 111.00008 * 297.79727 * 23 22 21 47 47 H 1.08999 * 109.06655 * 67.50758 * 24 13 3 48 48 H 1.09003 * 109.06699 * 308.56611 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6369 1.9705 0.8643 5 6 3.5453 1.4432 0.0680 6 1 4.1215 1.8981 -0.7242 7 6 4.1872 0.8631 1.1415 8 7 3.4856 0.3088 2.1060 9 14 6.0533 0.8644 1.2262 10 1 6.5478 2.2646 1.2264 11 1 6.4928 0.1834 2.4705 12 1 6.6027 0.1457 0.0485 13 7 1.6051 2.1157 -1.2313 14 6 2.2015 1.4771 -2.4226 15 6 1.2706 1.6947 -3.5885 16 7 1.6455 2.8842 -4.3812 17 6 2.0563 4.0445 -3.5586 18 6 1.1819 4.2402 -2.3464 19 6 1.0668 5.7258 -1.9971 20 6 0.1997 5.8851 -0.7451 21 6 -1.1734 5.2575 -1.0007 22 6 -0.9934 3.7858 -1.3797 23 7 -0.1590 3.6883 -2.5839 24 6 1.8136 3.4981 -1.1480 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9371 -0.0989 2.8615 31 1 3.1701 1.9290 -2.6360 32 1 2.3245 0.4088 -2.2447 33 1 1.2982 0.8161 -4.2330 34 1 0.2560 1.8263 -3.2123 35 1 2.3532 2.6558 -5.0632 36 1 2.0124 4.9439 -4.1727 37 1 3.0849 3.8958 -3.2299 38 1 2.0598 6.1328 -1.8062 39 1 0.6080 6.2606 -2.8287 40 1 0.6786 5.3836 0.0958 41 1 0.0794 6.9444 -0.5180 42 1 -1.7801 5.3294 -0.0980 43 1 -1.6690 5.7858 -1.8152 44 1 -1.9682 3.3394 -1.5760 45 1 -0.5100 3.2559 -0.5589 46 1 -0.6027 4.1413 -3.3689 47 1 2.8853 3.6961 -1.1314 48 1 1.3696 3.8702 -0.2247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246621134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:05 Heat of formation + Delta-G solvation = 24.839976 kcal Electronic energy + Delta-G solvation = -25372.467598 eV Core-core repulsion = 22269.429287 eV Total energy + Delta-G solvation = -3103.038311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23521 -37.01697 -35.14341 -32.52383 -31.82922 -31.31086 -30.93181 -28.03582 -26.75659 -25.19048 -24.33499 -22.93800 -22.41171 -20.97945 -20.13531 -18.86739 -18.45240 -16.51425 -15.77740 -15.51623 -15.06556 -14.67790 -14.55017 -14.35508 -13.97496 -13.62405 -13.26104 -12.88480 -12.83612 -12.37553 -12.03199 -11.95575 -11.76836 -11.66161 -11.53398 -11.21535 -11.05864 -10.98718 -10.88189 -10.72742 -10.57159 -10.43924 -10.37328 -10.11440 -9.93332 -9.64692 -9.47897 -9.29440 -8.96961 -8.34644 -7.89743 -7.47767 -6.86264 -5.95885 -4.10588 3.26226 3.31851 3.34320 4.38943 4.45212 4.80809 4.96357 5.06009 5.09839 5.23073 5.28054 5.31527 5.55500 5.64532 5.71202 5.84397 5.89719 5.98456 6.03990 6.11544 6.17751 6.20982 6.27251 6.29997 6.38354 6.41880 6.50538 6.55181 6.58552 6.68153 6.71339 6.78873 6.80667 7.20000 7.24630 7.30180 7.45295 7.48229 7.63714 7.71102 7.83159 7.94365 7.98035 8.09739 8.24714 8.47438 8.75629 9.02275 9.57118 11.01189 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.006601 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.980605 B = 4240.671822 C = 4296.161850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.219 3.781 4 H 0.032 0.968 5 C -0.540 4.540 6 H 0.050 0.950 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.527 5.527 14 C 0.051 3.949 15 C 0.054 3.946 16 N -0.686 5.686 17 C 0.078 3.922 18 C 0.114 3.886 19 C -0.138 4.138 20 C -0.120 4.120 21 C -0.156 4.156 22 C 0.056 3.944 23 N -0.632 5.632 24 C 0.094 3.906 25 H 0.054 0.946 26 H 0.022 0.978 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.261 0.739 31 H 0.017 0.983 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.124 0.876 35 H 0.324 0.676 36 H 0.057 0.943 37 H 0.029 0.971 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.328 0.672 47 H 0.016 0.984 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.918 7.487 -8.297 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C 0.113 3.887 4 H 0.050 0.950 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.249 5.249 14 C -0.078 4.078 15 C -0.075 4.075 16 N -0.316 5.316 17 C -0.051 4.051 18 C 0.021 3.979 19 C -0.179 4.179 20 C -0.158 4.158 21 C -0.196 4.196 22 C -0.074 4.074 23 N -0.260 5.260 24 C -0.036 4.036 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.146 0.854 47 H 0.033 0.967 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.818 6.876 -8.053 13.162 hybrid contribution 2.906 0.919 0.589 3.104 sum -4.912 7.795 -7.463 11.857 Atomic orbital electron populations 1.21698 0.98767 0.98240 1.00715 1.21592 0.92292 0.99185 1.01631 1.19243 0.92239 0.91067 0.86124 0.95030 1.21718 0.92938 1.37275 1.06019 0.93165 1.24899 0.97681 0.95158 0.95639 1.69866 1.34909 1.37756 1.09812 0.86788 0.86563 0.78077 0.77317 1.20539 1.21236 1.20449 1.59344 1.60183 1.01651 1.03768 1.22142 0.94427 0.99918 0.91338 1.22273 1.03833 0.88884 0.92518 1.60369 1.45832 1.07210 1.18173 1.21563 0.96285 0.93716 0.93556 1.20942 0.90535 0.91159 0.95250 1.22156 1.00172 0.97539 0.97985 1.21599 0.95872 0.99965 0.98341 1.22288 0.96840 0.99284 1.01145 1.22079 0.97181 0.93183 0.94914 1.60679 1.01406 1.58610 1.05315 1.20962 0.96746 0.90241 0.95698 0.92685 0.95923 0.94633 0.94890 0.89383 0.92916 0.96445 0.90760 0.94065 0.85803 0.86025 0.92507 0.95298 0.91939 0.92367 0.91056 0.92800 0.92202 0.92929 0.91789 0.89025 0.85414 0.96664 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.78 37.15 0.36 -2.36 16 2 C -0.11 -2.52 5.11 -26.73 -0.14 -2.65 16 3 C 0.22 5.20 1.68 -68.86 -0.12 5.09 16 4 H 0.03 0.85 7.81 -51.93 -0.41 0.44 16 5 C -0.54 -14.25 7.31 -34.44 -0.25 -14.51 16 6 H 0.05 1.36 6.45 -52.49 -0.34 1.02 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.68 11.30 55.43 0.63 -24.05 16 9 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.53 -10.38 2.32 -233.09 -0.54 -10.93 16 14 C 0.05 0.98 4.17 -4.48 -0.02 0.96 16 15 C 0.05 0.87 5.99 -4.46 -0.03 0.84 16 16 N -0.69 -9.94 6.63 -114.72 -0.76 -10.70 16 17 C 0.08 1.15 5.48 -4.33 -0.02 1.13 16 18 C 0.11 1.68 0.58 -131.92 -0.08 1.60 16 19 C -0.14 -1.81 4.72 -26.65 -0.13 -1.93 16 20 C -0.12 -1.54 5.69 -26.61 -0.15 -1.69 16 21 C -0.16 -1.89 6.08 -26.65 -0.16 -2.05 16 22 C 0.06 0.77 6.17 -3.84 -0.02 0.75 16 23 N -0.63 -8.86 2.65 -100.32 -0.27 -9.12 16 24 C 0.09 1.76 2.79 -6.59 -0.02 1.74 16 25 H 0.05 1.05 7.68 -51.93 -0.40 0.65 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.76 6.03 -51.93 -0.31 0.45 16 29 H 0.09 2.31 6.00 -51.93 -0.31 2.00 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.02 0.36 6.14 -51.93 -0.32 0.04 16 32 H 0.07 1.56 5.67 -51.93 -0.29 1.26 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.12 2.14 5.61 -51.93 -0.29 1.85 16 35 H 0.32 4.32 8.91 -39.29 -0.35 3.97 16 36 H 0.06 0.76 7.77 -51.93 -0.40 0.35 16 37 H 0.03 0.48 6.53 -51.93 -0.34 0.14 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.04 6.11 -51.93 -0.32 0.73 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.53 6.07 -51.93 -0.32 1.22 16 46 H 0.33 4.36 8.83 -39.29 -0.35 4.01 16 47 H 0.02 0.33 6.72 -51.93 -0.35 -0.02 16 48 H 0.06 1.25 4.46 -51.93 -0.23 1.02 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -25.85 332.98 -10.07 -35.92 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.26 Total: 9.02 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -0.86 Total: -11.32 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.94 Total: -54.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.85 -10.07 -35.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246621134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.760 kcal (2) G-P(sol) polarization free energy of solvation -25.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds