Wall clock time and date at job start Tue Mar 31 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 C 1.52996 * 109.47524 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47550 * 181.29741 * 4 3 2 6 6 C 1.46904 * 111.00148 * 295.34333 * 5 4 3 7 7 C 1.50699 * 109.46984 * 295.63394 * 6 5 4 8 8 H 1.08002 * 120.00072 * 354.94172 * 7 6 5 9 9 C 1.37877 * 120.00105 * 174.95292 * 7 6 5 10 10 N 1.31517 * 119.99705 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00523 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47416 * 89.99427 * 11 9 7 13 13 H 1.48504 * 109.47358 * 210.00008 * 11 9 7 14 14 H 1.48503 * 109.46917 * 329.99634 * 11 9 7 15 15 C 1.46897 * 111.00248 * 59.29651 * 5 4 3 16 16 H 1.09003 * 109.53178 * 300.15566 * 15 5 4 17 17 C 1.53100 * 109.53036 * 60.37909 * 15 5 4 18 18 C 1.53003 * 109.50562 * 179.24810 * 17 15 5 19 19 N 1.46991 * 109.53588 * 299.06608 * 18 17 15 20 20 C 1.46467 * 111.00684 * 59.33659 * 19 18 17 21 21 C 1.53500 * 113.66847 * 170.80681 * 20 19 18 22 22 N 1.48040 * 86.05593 * 222.07337 * 21 20 19 23 23 C 1.48048 * 90.83057 * 24.38882 * 22 21 20 24 24 C 1.52694 * 113.17490 * 302.28129 * 20 19 18 25 25 H 1.09004 * 109.46896 * 60.00057 * 1 2 3 26 26 H 1.08994 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47395 * 300.00300 * 1 2 3 28 28 H 1.09005 * 109.47380 * 240.00280 * 2 1 3 29 29 H 1.09004 * 109.46896 * 119.99943 * 2 1 3 30 30 H 1.09005 * 109.46738 * 59.99887 * 3 2 1 31 31 H 1.09003 * 109.47111 * 300.00322 * 3 2 1 32 32 H 1.09003 * 109.46828 * 61.29288 * 4 3 2 33 33 H 1.08999 * 109.46951 * 301.30202 * 4 3 2 34 34 H 1.09004 * 109.46884 * 55.62592 * 6 5 4 35 35 H 1.08993 * 109.47243 * 175.62924 * 6 5 4 36 36 H 0.97008 * 119.99892 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46674 * 59.23902 * 17 15 5 38 38 H 1.08999 * 109.46751 * 299.25592 * 17 15 5 39 39 H 1.08995 * 109.46489 * 179.04174 * 18 17 15 40 40 H 1.09002 * 109.45511 * 59.08155 * 18 17 15 41 41 H 1.00906 * 110.99350 * 183.29301 * 19 18 17 42 42 H 1.08996 * 113.78061 * 336.35907 * 21 20 19 43 43 H 1.09004 * 113.77654 * 107.78881 * 21 20 19 44 44 H 1.00897 * 111.00357 * 271.46995 * 22 21 20 45 45 H 1.08995 * 113.78146 * 221.32942 * 23 22 21 46 46 H 1.08996 * 113.88112 * 89.90946 * 23 22 21 47 47 H 1.09002 * 109.53663 * 175.23761 * 24 20 19 48 48 H 1.09000 * 109.54440 * 295.40019 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8272 0.0320 6 6 3.6822 3.5469 -1.1917 7 6 4.3647 2.9146 -2.3772 8 1 5.0767 2.1163 -2.2279 9 6 4.0805 3.3553 -3.6523 10 7 3.2133 4.3272 -3.8341 11 14 4.9270 2.5720 -5.1217 12 1 4.1180 1.4246 -5.6055 13 1 5.0622 3.5755 -6.2081 14 1 6.2741 2.0933 -4.7197 15 6 3.5745 3.5303 1.2271 16 1 2.4845 3.5432 1.2249 17 6 4.0769 2.8124 2.4825 18 6 3.5868 3.5559 3.7267 19 7 4.1204 4.9255 3.7229 20 6 3.6906 5.6531 2.5266 21 6 4.0229 7.1512 2.5639 22 7 2.6712 7.3609 1.9978 23 6 2.2131 6.0689 2.5572 24 6 4.1041 4.9685 1.2259 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9488 -0.9005 33 1 3.9329 0.9088 0.8790 34 1 2.6015 3.4956 -1.3248 35 1 3.9890 4.5895 -1.1093 36 1 3.0131 4.6371 -4.7313 37 1 5.1667 2.7917 2.4775 38 1 3.6943 1.7918 2.4951 39 1 3.9306 3.0347 4.6202 40 1 2.4974 3.5905 3.7234 41 1 3.8544 5.4194 4.5617 42 1 4.1442 7.5496 3.5712 43 1 4.8307 7.4390 1.8910 44 1 2.6927 7.3310 0.9895 45 1 1.5810 5.4958 1.8790 46 1 1.7987 6.1454 3.5624 47 1 3.6841 5.5110 0.3789 48 1 5.1913 4.9579 1.1491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246771199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:12 Heat of formation + Delta-G solvation = 30.076526 kcal Electronic energy + Delta-G solvation = -24065.292897 eV Core-core repulsion = 20962.481660 eV Total energy + Delta-G solvation = -3102.811237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70040 -37.95509 -35.41788 -33.96094 -32.59061 -30.56685 -29.65281 -28.04817 -26.21414 -26.06095 -24.38184 -23.08675 -23.01229 -21.13887 -20.96132 -19.10935 -18.20853 -16.59135 -16.31306 -16.06222 -15.21753 -15.09518 -14.66685 -14.53319 -14.12340 -13.81704 -13.64957 -13.36405 -13.02666 -12.81958 -12.51325 -12.25287 -12.08512 -11.91467 -11.81572 -11.49508 -11.41858 -11.08689 -11.04673 -10.91063 -10.76559 -10.66178 -10.59339 -10.46708 -10.24578 -10.09304 -9.81429 -9.49557 -9.15162 -8.80936 -8.42994 -8.11436 -7.15037 -6.04092 -4.04435 3.30040 3.36882 3.41005 4.02047 4.14689 4.40172 4.56486 4.66260 4.98387 5.18897 5.23745 5.28451 5.31244 5.34533 5.41528 5.48849 5.51781 5.59009 5.61151 5.70322 5.78691 5.80824 5.87987 5.96762 6.02142 6.06544 6.08106 6.09653 6.15842 6.22977 6.31018 6.34330 6.42474 6.51871 6.52552 6.66694 6.80827 6.94961 7.06469 7.27928 7.31965 7.41131 7.45201 7.80750 8.09410 8.20387 8.56677 9.03551 9.59675 11.06467 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.006136 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.175484 B = 4562.269171 C = 5837.005942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.156 4.156 4 C 0.065 3.935 5 N -0.530 5.530 6 C 0.188 3.812 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.087 3.913 16 H 0.030 0.970 17 C -0.110 4.110 18 C 0.063 3.937 19 N -0.674 5.674 20 C 0.062 3.938 21 C 0.026 3.974 22 N -0.657 5.657 23 C -0.016 4.016 24 C -0.088 4.088 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.053 0.947 34 H -0.002 1.002 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.339 0.661 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.343 0.657 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -1.626 13.826 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.195 4.195 4 C -0.063 4.063 5 N -0.253 5.253 6 C 0.063 3.937 7 C -0.543 4.543 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.022 4.022 16 H 0.048 0.952 17 C -0.148 4.148 18 C -0.067 4.067 19 N -0.304 5.304 20 C -0.032 4.032 21 C -0.105 4.105 22 N -0.285 5.285 23 C -0.148 4.148 24 C -0.126 4.126 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.015 0.985 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.157 0.843 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.158 0.842 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.681 -1.082 13.868 14.011 hybrid contribution -1.102 -0.907 -1.299 1.929 sum -2.782 -1.989 12.569 13.026 Atomic orbital electron populations 1.21767 0.96630 1.00779 1.01572 1.21429 0.95184 0.97559 1.01414 1.22236 0.99057 0.96231 1.01933 1.22060 0.91396 0.91370 1.01486 1.62381 1.58566 1.01784 1.02538 1.19800 0.94658 0.93966 0.85263 1.21150 1.23915 1.19045 0.90198 0.92000 1.24957 0.95353 0.95236 0.98949 1.69951 1.34101 1.27770 1.21998 0.86562 0.80031 0.78926 0.82302 1.20811 1.21305 1.19800 1.21500 0.96053 0.93036 0.91574 0.95216 1.21650 1.02328 0.98129 0.92738 1.21878 0.96552 0.89344 0.98919 1.60143 1.63450 1.03095 1.03723 1.23843 0.92591 0.93953 0.92774 1.23786 0.92501 0.92722 1.01467 1.65068 1.14652 1.34699 1.14089 1.24373 0.97969 0.91305 1.01130 1.21473 1.02761 0.95329 0.93071 0.92754 0.93370 0.93325 0.92005 0.92804 0.93189 0.90889 0.90021 0.92871 0.98456 0.95351 0.93012 0.90558 0.91743 0.91071 0.95577 0.84301 0.88744 0.90346 0.84158 0.90946 0.89417 0.90844 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.86 16 3 C -0.16 -2.68 4.54 -26.73 -0.12 -2.81 16 4 C 0.07 1.21 4.79 -3.83 -0.02 1.20 16 5 N -0.53 -10.80 4.58 -227.87 -1.04 -11.84 16 6 C 0.19 4.63 4.25 -4.97 -0.02 4.61 16 7 C -0.50 -13.73 8.32 -34.44 -0.29 -14.02 16 8 H 0.06 1.69 7.21 -52.49 -0.38 1.31 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 15 C 0.09 1.49 1.51 -67.53 -0.10 1.39 16 16 H 0.03 0.54 5.68 -51.93 -0.30 0.24 16 17 C -0.11 -1.60 5.07 -26.68 -0.14 -1.73 16 18 C 0.06 0.75 6.46 -3.77 -0.02 0.73 16 19 N -0.67 -8.16 6.62 -102.56 -0.68 -8.84 16 20 C 0.06 0.82 1.02 -134.85 -0.14 0.68 16 21 C 0.03 0.32 8.20 -2.94 -0.02 0.30 16 22 N -0.66 -8.90 8.55 -118.76 -1.02 -9.92 16 23 C -0.02 -0.20 7.56 -2.93 -0.02 -0.23 16 24 C -0.09 -1.46 3.94 -26.75 -0.11 -1.56 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.83 6.32 -51.93 -0.33 0.50 16 31 H 0.07 1.51 6.49 -51.93 -0.34 1.17 16 32 H 0.08 1.69 6.73 -51.93 -0.35 1.34 16 33 H 0.05 0.88 6.37 -51.93 -0.33 0.55 16 34 H 0.00 -0.06 6.26 -51.93 -0.32 -0.39 16 35 H 0.03 0.75 5.89 -51.93 -0.31 0.44 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.31 7.78 -51.93 -0.40 -0.09 16 41 H 0.34 3.46 8.72 -39.29 -0.34 3.12 16 42 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 43 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 44 H 0.34 4.85 8.07 -39.29 -0.32 4.53 16 45 H 0.07 1.04 7.52 -51.93 -0.39 0.65 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.07 1.34 5.66 -51.93 -0.29 1.05 16 48 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -28.09 353.84 -11.09 -39.19 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.52 Total: 8.44 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.89 Total: -13.44 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -2.00 Total: -55.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.09 -11.09 -39.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246771199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.264 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds