Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47941 * 110.99988 * 2 1 4 4 C 1.53927 * 113.32804 * 192.18865 * 3 2 1 5 5 C 1.50540 * 112.93609 * 317.74570 * 4 3 2 6 6 C 1.54525 * 108.86814 * 91.75594 * 5 4 3 7 7 H 1.09003 * 108.98095 * 43.29287 * 6 5 4 8 8 N 1.46896 * 109.04354 * 162.20528 * 6 5 4 9 9 C 1.46962 * 110.99858 * 61.57637 * 8 6 5 10 10 C 1.53051 * 109.36434 * 183.18584 * 9 8 6 11 11 N 1.46949 * 109.36770 * 301.60348 * 10 9 8 12 12 C 1.46906 * 111.00177 * 183.18606 * 11 10 9 13 13 C 1.50697 * 109.46853 * 169.99904 * 12 11 10 14 14 H 1.08001 * 120.00552 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99669 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47130 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47337 * 119.99652 * 17 15 13 20 20 H 1.48500 * 109.47376 * 240.00219 * 17 15 13 21 21 C 1.46962 * 110.88264 * 59.31721 * 11 10 9 22 22 C 1.46949 * 111.00172 * 185.37900 * 8 6 5 23 23 C 1.45873 * 111.66362 * 282.76826 * 6 5 4 24 24 C 1.44303 * 111.00237 * 232.58182 * 2 1 3 25 25 H 1.08992 * 109.47307 * 187.41295 * 1 2 3 26 26 H 1.08999 * 109.47184 * 307.41895 * 1 2 3 27 27 H 1.09000 * 109.46638 * 67.41120 * 1 2 3 28 28 H 1.08997 * 108.70864 * 313.17223 * 3 2 1 29 29 H 1.08998 * 108.71695 * 71.19259 * 3 2 1 30 30 H 1.08999 * 108.79124 * 78.63956 * 4 3 2 31 31 H 1.09000 * 108.78936 * 196.85782 * 4 3 2 32 32 H 1.08995 * 109.57464 * 331.93563 * 5 4 3 33 33 H 1.09004 * 109.56801 * 211.57017 * 5 4 3 34 34 H 1.09002 * 109.48926 * 63.22309 * 9 8 6 35 35 H 1.08999 * 109.51130 * 303.16751 * 9 8 6 36 36 H 1.09000 * 109.49054 * 181.63113 * 10 9 8 37 37 H 1.09006 * 109.50143 * 61.57925 * 10 9 8 38 38 H 1.09002 * 109.47025 * 289.99927 * 12 11 10 39 39 H 1.08996 * 109.46925 * 49.99993 * 12 11 10 40 40 H 0.97002 * 119.99967 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.48926 * 60.64753 * 21 11 10 42 42 H 1.08998 * 109.49066 * 180.71010 * 21 11 10 43 43 H 1.09007 * 109.48729 * 296.77710 * 22 8 6 44 44 H 1.09001 * 109.49291 * 56.81887 * 22 8 6 45 45 H 1.08998 * 108.84542 * 182.31687 * 23 6 5 46 46 H 1.09003 * 108.84439 * 300.67323 * 23 6 5 47 47 H 1.08996 * 109.69030 * 101.65045 * 24 2 1 48 48 H 1.09005 * 109.69212 * 341.06235 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.5075 1.4551 -0.2984 5 6 4.2992 0.3907 0.4133 6 6 4.4182 -0.8438 -0.5084 7 1 4.6454 -0.5098 -1.5208 8 7 5.5136 -1.6966 -0.0283 9 6 5.2459 -2.1812 1.3331 10 6 6.4428 -2.9981 1.8255 11 7 6.6779 -4.1206 0.9068 12 6 7.7734 -4.9734 1.3870 13 6 7.8252 -6.2351 0.5645 14 1 7.1152 -6.3884 -0.2348 15 6 8.7786 -7.1943 0.8329 16 7 9.6430 -7.0080 1.8065 17 14 8.8434 -8.7580 -0.1870 18 1 7.7704 -8.7245 -1.2130 19 1 10.1655 -8.8583 -0.8558 20 1 8.6454 -9.9344 0.6973 21 6 6.9457 -3.6360 -0.4546 22 6 5.7487 -2.8191 -0.9471 23 6 3.1840 -1.6212 -0.5294 24 6 1.9862 -0.8186 -1.0699 25 1 -0.3633 -1.0190 0.1326 26 1 -0.3633 0.6244 0.8162 27 1 -0.3632 0.3948 -0.9489 28 1 1.4651 1.9607 -0.7529 29 1 1.8138 1.8270 0.9772 30 1 3.6586 1.3461 -1.3724 31 1 3.8786 2.4329 0.0086 32 1 3.7887 0.1106 1.3347 33 1 5.2943 0.7701 0.6458 34 1 4.3549 -2.8091 1.3269 35 1 5.0874 -1.3316 1.9973 36 1 6.2345 -3.3828 2.8239 37 1 7.3282 -2.3631 1.8579 38 1 8.7185 -4.4387 1.2920 39 1 7.6036 -5.2284 2.4330 40 1 10.3139 -7.6827 1.9951 41 1 7.8366 -3.0081 -0.4484 42 1 7.1040 -4.4858 -1.1185 43 1 4.8635 -3.4543 -0.9791 44 1 5.9566 -2.4345 -1.9455 45 1 3.3317 -2.4994 -1.1579 46 1 2.9582 -1.9506 0.4848 47 1 2.3113 -0.1835 -1.8940 48 1 1.2116 -1.5029 -1.4162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254522597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = 20.727857 kcal Electronic energy + Delta-G solvation = -23457.156788 eV Core-core repulsion = 20353.940162 eV Total energy + Delta-G solvation = -3103.216626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13452 -38.08626 -35.71595 -33.34791 -32.53117 -31.34572 -30.37476 -28.25993 -27.00099 -25.35532 -24.60503 -23.65856 -22.81037 -21.61448 -20.32239 -19.81823 -18.56029 -16.60072 -16.29591 -15.95745 -15.22698 -15.15560 -14.55392 -14.36802 -14.30744 -14.20949 -13.68401 -13.43697 -13.35632 -13.17123 -12.90473 -12.83422 -12.10657 -11.97481 -11.62810 -11.56957 -11.39899 -11.26355 -11.08142 -11.02993 -10.84374 -10.70011 -10.59258 -10.57144 -10.32311 -10.20612 -10.00067 -9.62665 -9.10635 -8.42412 -8.39743 -7.92194 -7.14395 -5.99067 -4.00142 3.33023 3.40238 3.45089 3.68836 4.18895 4.45652 4.53982 4.74615 4.84561 4.96449 4.97501 5.04322 5.12888 5.20170 5.30817 5.36591 5.43506 5.51071 5.53500 5.59994 5.62249 5.65630 5.68193 5.80238 5.82699 5.86365 5.95459 5.97422 6.12524 6.14629 6.20598 6.27877 6.38730 6.44242 6.57512 6.70584 6.76741 6.86641 7.04146 7.29833 7.39911 7.44615 7.49085 7.85194 8.15180 8.28034 8.61599 9.07954 9.63932 11.11900 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.034359 B = 0.003396 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.732652 B = 8244.128563 C = 8535.152128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.552 5.552 3 C 0.064 3.936 4 C -0.118 4.118 5 C -0.102 4.102 6 C 0.091 3.909 7 H 0.068 0.932 8 N -0.534 5.534 9 C 0.059 3.941 10 C 0.056 3.944 11 N -0.538 5.538 12 C 0.193 3.807 13 C -0.505 4.505 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.068 3.932 22 C 0.055 3.945 23 C -0.150 4.150 24 C 0.069 3.931 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.021 0.979 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.028 0.972 38 H -0.009 1.009 39 H 0.029 0.971 40 H 0.260 0.740 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.041 0.959 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 17.093 -4.831 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.277 5.277 3 C -0.064 4.064 4 C -0.156 4.156 5 C -0.140 4.140 6 C -0.017 4.017 7 H 0.086 0.914 8 N -0.258 5.258 9 C -0.069 4.069 10 C -0.073 4.073 11 N -0.263 5.263 12 C 0.068 3.932 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.060 4.060 22 C -0.073 4.073 23 C -0.190 4.190 24 C -0.060 4.060 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.009 0.991 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.388 16.792 -4.332 23.185 hybrid contribution -0.135 -0.559 -1.208 1.338 sum -15.523 16.233 -5.540 23.134 Atomic orbital electron populations 1.22371 0.87182 1.02281 0.99932 1.60694 1.07077 1.12621 1.47335 1.22402 0.95065 0.88159 1.00739 1.21351 0.93724 0.99716 1.00824 1.21322 0.99810 0.94053 0.98824 1.20622 0.89184 0.93476 0.98446 0.91355 1.62516 1.40397 1.20180 1.02722 1.22177 0.97621 0.97445 0.89649 1.22076 0.96269 0.92263 0.96694 1.62268 1.46011 1.17074 1.00961 1.19699 0.86126 0.91141 0.96233 1.21205 1.14474 1.02062 1.16620 0.91902 1.24997 0.95615 0.98574 0.95504 1.69974 1.18546 1.35049 1.30293 0.86459 0.77746 0.83158 0.80156 1.19691 1.21142 1.21053 1.21973 0.94533 0.97204 0.92320 1.22259 0.98647 0.91230 0.95150 1.21252 0.95327 0.99186 1.03188 1.21706 0.97081 0.95547 0.91661 0.91327 0.91654 0.96018 0.95351 0.91170 0.92378 0.91356 0.91014 0.91171 0.94052 0.91126 0.91272 0.95356 0.99137 0.95294 0.93028 0.95481 0.89776 0.94103 0.91529 0.91717 0.90397 0.94026 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.27 60.07 0.56 0.80 16 2 N -0.55 -5.34 4.25 -242.92 -1.03 -6.37 16 3 C 0.06 0.54 5.42 -2.77 -0.02 0.53 16 4 C -0.12 -1.04 5.28 -27.48 -0.14 -1.18 16 5 C -0.10 -1.11 4.13 -27.16 -0.11 -1.22 16 6 C 0.09 1.11 1.83 -70.29 -0.13 0.98 16 7 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 8 N -0.53 -8.06 4.69 -229.60 -1.08 -9.14 16 9 C 0.06 0.93 4.83 -3.76 -0.02 0.91 16 10 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 11 N -0.54 -12.02 4.70 -235.91 -1.11 -13.13 16 12 C 0.19 5.17 4.72 -4.97 -0.02 5.15 16 13 C -0.50 -14.40 8.47 -34.44 -0.29 -14.69 16 14 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.07 1.38 5.43 -3.76 -0.02 1.36 16 22 C 0.06 0.90 5.15 -3.77 -0.02 0.88 16 23 C -0.15 -1.77 4.10 -29.59 -0.12 -1.89 16 24 C 0.07 0.69 5.42 -4.70 -0.03 0.66 16 25 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 26 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 27 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.03 0.23 8.02 -51.93 -0.42 -0.19 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.52 6.66 -51.93 -0.35 0.17 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.84 7.01 -51.93 -0.36 0.47 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.68 6.49 -51.93 -0.34 0.35 16 35 H 0.07 1.00 6.58 -51.93 -0.34 0.66 16 36 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 39 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.81 6.79 -51.93 -0.35 1.46 16 43 H 0.04 0.68 6.44 -51.93 -0.33 0.35 16 44 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 45 H 0.06 0.82 6.16 -51.93 -0.32 0.50 16 46 H 0.08 1.05 6.26 -51.93 -0.33 0.72 16 47 H 0.04 0.40 6.79 -51.93 -0.35 0.05 16 48 H 0.06 0.61 7.57 -51.93 -0.39 0.22 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -29.98 348.04 -11.58 -41.56 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.84 Total: -3.45 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.48 Total: -5.20 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -2.48 Total: -55.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.98 -11.58 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254522597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.291 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds