Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47941 * 110.99988 * 2 1 4 4 C 1.53927 * 113.32804 * 192.18865 * 3 2 1 5 5 C 1.50540 * 112.93609 * 317.74570 * 4 3 2 6 6 C 1.54525 * 108.86814 * 91.75594 * 5 4 3 7 7 H 1.09003 * 108.98095 * 43.29287 * 6 5 4 8 8 N 1.46896 * 109.04354 * 162.20528 * 6 5 4 9 9 C 1.46962 * 110.99858 * 61.57637 * 8 6 5 10 10 C 1.53051 * 109.36434 * 183.18584 * 9 8 6 11 11 N 1.46949 * 109.36770 * 301.60348 * 10 9 8 12 12 C 1.46906 * 111.00177 * 183.18606 * 11 10 9 13 13 C 1.50697 * 109.46853 * 169.99904 * 12 11 10 14 14 H 1.08001 * 120.00552 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99669 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47130 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47337 * 119.99652 * 17 15 13 20 20 H 1.48500 * 109.47376 * 240.00219 * 17 15 13 21 21 C 1.46962 * 110.88264 * 59.31721 * 11 10 9 22 22 C 1.46949 * 111.00172 * 185.37900 * 8 6 5 23 23 C 1.45873 * 111.66362 * 282.76826 * 6 5 4 24 24 C 1.44303 * 111.00237 * 232.58182 * 2 1 3 25 25 H 1.08992 * 109.47307 * 187.41295 * 1 2 3 26 26 H 1.08999 * 109.47184 * 307.41895 * 1 2 3 27 27 H 1.09000 * 109.46638 * 67.41120 * 1 2 3 28 28 H 1.08997 * 108.70864 * 313.17223 * 3 2 1 29 29 H 1.08998 * 108.71695 * 71.19259 * 3 2 1 30 30 H 1.08999 * 108.79124 * 78.63956 * 4 3 2 31 31 H 1.09000 * 108.78936 * 196.85782 * 4 3 2 32 32 H 1.08995 * 109.57464 * 331.93563 * 5 4 3 33 33 H 1.09004 * 109.56801 * 211.57017 * 5 4 3 34 34 H 1.09002 * 109.48926 * 63.22309 * 9 8 6 35 35 H 1.08999 * 109.51130 * 303.16751 * 9 8 6 36 36 H 1.09000 * 109.49054 * 181.63113 * 10 9 8 37 37 H 1.09006 * 109.50143 * 61.57925 * 10 9 8 38 38 H 1.09002 * 109.47025 * 289.99927 * 12 11 10 39 39 H 1.08996 * 109.46925 * 49.99993 * 12 11 10 40 40 H 0.97002 * 119.99967 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.48926 * 60.64753 * 21 11 10 42 42 H 1.08998 * 109.49066 * 180.71010 * 21 11 10 43 43 H 1.09007 * 109.48729 * 296.77710 * 22 8 6 44 44 H 1.09001 * 109.49291 * 56.81887 * 22 8 6 45 45 H 1.08998 * 108.84542 * 182.31687 * 23 6 5 46 46 H 1.09003 * 108.84439 * 300.67323 * 23 6 5 47 47 H 1.08996 * 109.69030 * 101.65045 * 24 2 1 48 48 H 1.09005 * 109.69212 * 341.06235 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.5075 1.4551 -0.2984 5 6 4.2992 0.3907 0.4133 6 6 4.4182 -0.8438 -0.5084 7 1 4.6454 -0.5098 -1.5208 8 7 5.5136 -1.6966 -0.0283 9 6 5.2459 -2.1812 1.3331 10 6 6.4428 -2.9981 1.8255 11 7 6.6779 -4.1206 0.9068 12 6 7.7734 -4.9734 1.3870 13 6 7.8252 -6.2351 0.5645 14 1 7.1152 -6.3884 -0.2348 15 6 8.7786 -7.1943 0.8329 16 7 9.6430 -7.0080 1.8065 17 14 8.8434 -8.7580 -0.1870 18 1 7.7704 -8.7245 -1.2130 19 1 10.1655 -8.8583 -0.8558 20 1 8.6454 -9.9344 0.6973 21 6 6.9457 -3.6360 -0.4546 22 6 5.7487 -2.8191 -0.9471 23 6 3.1840 -1.6212 -0.5294 24 6 1.9862 -0.8186 -1.0699 25 1 -0.3633 -1.0190 0.1326 26 1 -0.3633 0.6244 0.8162 27 1 -0.3632 0.3948 -0.9489 28 1 1.4651 1.9607 -0.7529 29 1 1.8138 1.8270 0.9772 30 1 3.6586 1.3461 -1.3724 31 1 3.8786 2.4329 0.0086 32 1 3.7887 0.1106 1.3347 33 1 5.2943 0.7701 0.6458 34 1 4.3549 -2.8091 1.3269 35 1 5.0874 -1.3316 1.9973 36 1 6.2345 -3.3828 2.8239 37 1 7.3282 -2.3631 1.8579 38 1 8.7185 -4.4387 1.2920 39 1 7.6036 -5.2284 2.4330 40 1 10.3139 -7.6827 1.9951 41 1 7.8366 -3.0081 -0.4484 42 1 7.1040 -4.4858 -1.1185 43 1 4.8635 -3.4543 -0.9791 44 1 5.9566 -2.4345 -1.9455 45 1 3.3317 -2.4994 -1.1579 46 1 2.9582 -1.9506 0.4848 47 1 2.3113 -0.1835 -1.8940 48 1 1.2116 -1.5029 -1.4162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254522597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = -0.474182 kcal Electronic energy + Delta-G solvation = -23458.076177 eV Core-core repulsion = 20353.940162 eV Total energy + Delta-G solvation = -3104.136015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20644 -39.27529 -37.07121 -34.89490 -33.92582 -32.53709 -31.85513 -29.72835 -28.20658 -26.78945 -25.53584 -24.80752 -24.21732 -23.37884 -21.58807 -20.59960 -19.89582 -18.47436 -17.68056 -16.84989 -16.71012 -16.03826 -16.00994 -15.82768 -15.60977 -15.45873 -15.13237 -14.84017 -14.41322 -14.24242 -14.00944 -13.88240 -13.63835 -13.35152 -13.02154 -12.83671 -12.71368 -12.57165 -12.36697 -12.29609 -12.21282 -12.05275 -11.97483 -11.89344 -11.61020 -11.42575 -11.36876 -11.22643 -11.00169 -10.62817 -9.24370 -9.05852 -8.98313 -8.21017 -6.31576 1.40688 1.41401 1.55246 2.40090 2.93707 3.07304 3.11168 3.31508 3.70565 3.90199 4.02388 4.13480 4.20311 4.24089 4.26763 4.34776 4.42104 4.46371 4.48482 4.55501 4.61649 4.67215 4.69131 4.76862 4.81859 4.85950 4.90604 4.96912 5.02362 5.04786 5.06385 5.10374 5.14945 5.21964 5.23737 5.31066 5.33715 5.46567 5.54374 5.64091 6.02942 6.13428 6.20762 6.22393 6.34465 6.38853 6.63256 6.84698 7.38272 8.90626 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.034359 B = 0.003396 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.732652 B = 8244.128563 C = 8535.152128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.569 5.569 3 C 0.064 3.936 4 C -0.114 4.114 5 C -0.095 4.095 6 C 0.094 3.906 7 H 0.076 0.924 8 N -0.541 5.541 9 C 0.074 3.926 10 C 0.054 3.946 11 N -0.543 5.543 12 C 0.209 3.791 13 C -0.522 4.522 14 H 0.063 0.937 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.070 3.930 22 C 0.068 3.932 23 C -0.143 4.143 24 C 0.076 3.924 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.019 0.981 38 H -0.042 1.042 39 H 0.002 0.998 40 H 0.265 0.735 41 H 0.013 0.987 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.402 18.015 -6.253 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.294 5.294 3 C -0.063 4.063 4 C -0.152 4.152 5 C -0.133 4.133 6 C -0.013 4.013 7 H 0.094 0.906 8 N -0.266 5.266 9 C -0.054 4.054 10 C -0.074 4.074 11 N -0.268 5.268 12 C 0.082 3.918 13 C -0.560 4.560 14 H 0.081 0.919 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.796 3.204 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.058 4.058 22 C -0.060 4.060 23 C -0.182 4.182 24 C -0.054 4.054 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.037 0.963 38 H -0.024 1.024 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.096 17.744 -5.759 25.304 hybrid contribution 0.393 -0.785 -0.718 1.134 sum -16.704 16.959 -6.477 24.669 Atomic orbital electron populations 1.22382 0.86151 1.02466 1.00645 1.60657 1.08144 1.13263 1.47307 1.22416 0.94812 0.87723 1.01317 1.21314 0.93683 0.99581 1.00633 1.21247 0.99770 0.93921 0.98370 1.20710 0.88215 0.93315 0.99062 0.90562 1.62511 1.42247 1.19682 1.02113 1.22014 0.95329 0.97471 0.90601 1.22172 0.97484 0.91484 0.96301 1.62215 1.43684 1.18428 1.02514 1.19352 0.86108 0.91540 0.94766 1.21474 1.14790 1.02887 1.16887 0.91878 1.25958 0.94955 1.02253 0.96631 1.70104 1.19204 1.36461 1.31850 0.85292 0.78169 0.78357 0.78538 1.18621 1.20330 1.20342 1.21966 0.96123 0.96918 0.90828 1.22098 0.96477 0.91244 0.96205 1.21159 0.96023 0.99044 1.02014 1.21603 0.96352 0.95611 0.91791 0.91500 0.90911 0.95259 0.94355 0.90802 0.92137 0.89908 0.91823 0.91804 0.94485 0.89036 0.91466 0.96292 1.02393 0.97956 0.92657 0.96832 0.91458 0.94233 0.89209 0.92693 0.92120 0.93358 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.27 127.69 1.18 1.61 16 2 N -0.57 -9.63 4.25 -922.47 -3.92 -13.56 16 3 C 0.06 0.92 5.42 86.42 0.47 1.39 16 4 C -0.11 -1.68 5.28 30.11 0.16 -1.52 16 5 C -0.10 -1.85 4.13 30.32 0.13 -1.73 16 6 C 0.09 2.11 1.83 43.25 0.08 2.19 16 7 H 0.08 1.63 7.55 -2.39 -0.02 1.62 16 8 N -0.54 -15.71 4.69 -880.33 -4.13 -19.84 16 9 C 0.07 2.29 4.83 86.31 0.42 2.70 16 10 C 0.05 2.12 5.61 86.31 0.48 2.60 16 11 N -0.54 -25.05 4.70 -900.27 -4.23 -29.28 16 12 C 0.21 11.72 4.72 85.55 0.40 12.12 16 13 C -0.52 -30.53 8.47 25.60 0.22 -30.31 16 14 H 0.06 3.61 7.13 -2.91 -0.02 3.59 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 17 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 C 0.07 2.89 5.43 86.31 0.47 3.36 16 22 C 0.07 2.15 5.15 86.31 0.44 2.59 16 23 C -0.14 -3.13 4.10 28.74 0.12 -3.01 16 24 C 0.08 1.33 5.42 87.12 0.47 1.80 16 25 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 26 H 0.07 0.87 8.11 -2.39 -0.02 0.85 16 27 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.04 0.49 8.02 -2.39 -0.02 0.47 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.88 6.66 -2.39 -0.02 0.87 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.36 7.01 -2.39 -0.02 1.34 16 33 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.04 1.20 6.49 -2.39 -0.02 1.18 16 35 H 0.09 2.47 6.58 -2.39 -0.02 2.46 16 36 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 37 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 38 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 39 H 0.00 0.14 8.03 -2.39 -0.02 0.12 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 2.96 6.79 -2.39 -0.02 2.95 16 43 H 0.04 1.28 6.44 -2.38 -0.02 1.27 16 44 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 45 H 0.05 1.30 6.16 -2.39 -0.01 1.29 16 46 H 0.06 1.55 6.26 -2.39 -0.01 1.54 16 47 H 0.05 0.79 6.79 -2.39 -0.02 0.77 16 48 H 0.07 1.16 7.57 -2.38 -0.02 1.14 16 Total: -1.00 -65.48 348.04 -3.57 -69.05 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.90 Total: 9.68 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.50 Total: -5.75 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -12.00 Total: -120.07 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.48 -3.57 -69.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254522597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.575 kcal (2) G-P(sol) polarization free energy of solvation -65.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds