Wall clock time and date at job start Tue Mar 31 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47703 * 2 1 4 4 C 1.53000 * 109.47561 * 184.90333 * 3 2 1 5 5 H 1.08996 * 109.46858 * 302.81889 * 4 3 2 6 6 C 1.53000 * 109.47254 * 182.81922 * 4 3 2 7 7 N 1.46903 * 109.46825 * 62.82023 * 4 3 2 8 8 C 1.46909 * 110.99665 * 189.24850 * 7 4 3 9 9 C 1.50695 * 109.47094 * 71.97827 * 8 7 4 10 10 H 1.08003 * 120.00336 * 355.21808 * 9 8 7 11 11 C 1.37879 * 119.99891 * 175.20899 * 9 8 7 12 12 N 1.31512 * 119.99912 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99939 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46770 * 90.00153 * 13 11 9 15 15 H 1.48504 * 109.47178 * 209.99622 * 13 11 9 16 16 H 1.48499 * 109.47217 * 330.00007 * 13 11 9 17 17 C 1.46894 * 111.00263 * 65.29582 * 7 4 3 18 18 C 1.53011 * 109.47116 * 206.64916 * 17 7 4 19 19 C 1.52989 * 109.46288 * 164.04265 * 18 17 7 20 20 C 1.52989 * 109.51219 * 315.99085 * 19 18 17 21 21 C 1.53001 * 109.47151 * 112.93017 * 20 19 18 22 22 C 1.53008 * 109.43566 * 284.04885 * 21 20 19 23 23 C 1.52978 * 109.48738 * 75.95875 * 22 21 20 24 24 C 1.52994 * 109.50668 * 247.06946 * 23 22 21 25 25 H 1.09005 * 109.46400 * 60.00298 * 1 2 3 26 26 H 1.08996 * 109.47193 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46836 * 300.00588 * 1 2 3 28 28 H 1.09004 * 109.47107 * 239.99551 * 2 1 3 29 29 H 1.09003 * 109.46867 * 119.99922 * 2 1 3 30 30 H 1.08996 * 109.47212 * 64.89787 * 3 2 1 31 31 H 1.09009 * 109.46977 * 304.90126 * 3 2 1 32 32 H 1.08996 * 109.46975 * 304.35240 * 6 4 3 33 33 H 1.08993 * 109.46807 * 64.35558 * 6 4 3 34 34 H 1.09001 * 109.46888 * 184.35355 * 6 4 3 35 35 H 1.08994 * 109.46974 * 311.97854 * 8 7 4 36 36 H 1.08997 * 109.46873 * 191.97963 * 8 7 4 37 37 H 0.97001 * 119.99985 * 180.02562 * 12 11 9 38 38 H 1.08995 * 109.46915 * 326.64656 * 17 7 4 39 39 H 1.08998 * 109.47408 * 284.04025 * 18 17 7 40 40 H 1.09005 * 109.47523 * 44.05167 * 18 17 7 41 41 H 1.09005 * 109.46751 * 195.97540 * 19 18 17 42 42 H 1.09000 * 109.46609 * 75.99964 * 19 18 17 43 43 H 1.09005 * 109.46614 * 352.93513 * 20 19 18 44 44 H 1.08996 * 109.47032 * 232.93607 * 20 19 18 45 45 H 1.09001 * 109.47833 * 164.05640 * 21 20 19 46 46 H 1.09006 * 109.48351 * 44.04022 * 21 20 19 47 47 H 1.09006 * 109.46319 * 315.95409 * 22 21 20 48 48 H 1.08996 * 109.46445 * 195.96637 * 22 21 20 49 49 H 1.08995 * 109.46951 * 127.05576 * 23 22 21 50 50 H 1.08998 * 109.46090 * 7.07138 * 23 22 21 51 51 H 1.09003 * 109.47080 * 284.01597 * 24 23 22 52 52 H 1.08996 * 109.47795 * 164.01376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5651 1.4441 -0.1233 5 1 3.9962 0.8632 0.6920 6 6 4.0809 2.8828 -0.0526 7 7 3.9531 0.8474 -1.4084 8 6 5.4048 0.6307 -1.4712 9 6 5.7819 -0.5116 -0.5635 10 1 5.0327 -0.9749 0.0614 11 6 7.0834 -0.9655 -0.5310 12 7 7.4124 -1.9628 0.2607 13 14 8.3794 -0.1641 -1.6116 14 1 9.0143 0.9575 -0.8738 15 1 9.4131 -1.1676 -1.9719 16 1 7.7411 0.3550 -2.8478 17 6 3.4952 1.6746 -2.5326 18 6 3.2984 0.7929 -3.7676 19 6 2.4607 1.5457 -4.8030 20 6 1.2853 2.2342 -4.1066 21 6 1.4650 3.7517 -4.1831 22 6 2.5285 4.1900 -3.1742 23 6 3.9170 3.8370 -3.7105 24 6 4.5416 2.7492 -2.8347 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7503 1.9303 0.9306 31 1 1.6069 1.9810 -0.8429 32 1 3.5912 3.4824 -0.8199 33 1 3.8607 3.2998 0.9300 34 1 5.1583 2.8910 -0.2177 35 1 5.9213 1.5353 -1.1506 36 1 5.6924 0.3915 -2.4950 37 1 8.3281 -2.2819 0.2839 38 1 2.5501 2.1509 -2.2719 39 1 4.2696 0.5458 -4.1961 40 1 2.7836 -0.1242 -3.4811 41 1 2.0820 0.8423 -5.5447 42 1 3.0800 2.2949 -5.2961 43 1 1.2502 1.9247 -3.0620 44 1 0.3551 1.9530 -4.6003 45 1 0.5195 4.2418 -3.9507 46 1 1.7811 4.0301 -5.1885 47 1 2.3637 3.6767 -2.2267 48 1 2.4613 5.2669 -3.0204 49 1 4.5494 4.7246 -3.6936 50 1 3.8292 3.4731 -4.7342 51 1 4.8897 3.1902 -1.9006 52 1 5.3839 2.2989 -3.3598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257321245.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:22 Heat of formation + Delta-G solvation = -19.677560 kcal Electronic energy + Delta-G solvation = -25389.917649 eV Core-core repulsion = 22388.489256 eV Total energy + Delta-G solvation = -3001.428393 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47638 -38.18685 -35.57857 -34.56449 -33.80452 -32.70670 -31.43346 -29.11845 -27.70026 -26.56181 -26.18095 -24.04095 -22.66950 -22.20797 -21.47530 -20.91213 -19.44016 -18.78594 -17.42790 -16.78708 -16.20220 -15.84921 -15.42452 -15.28011 -15.10634 -14.91132 -14.66996 -14.41165 -14.28100 -14.02736 -13.87479 -13.66261 -13.28967 -13.27020 -12.91742 -12.66707 -12.64406 -12.37231 -12.34891 -12.18133 -12.00178 -11.94443 -11.88112 -11.71821 -11.54143 -11.41088 -11.37273 -11.22836 -11.12783 -10.98707 -10.74554 -10.56662 -10.39308 -8.72999 -8.26376 -6.26046 1.28979 1.31244 1.41416 2.32886 3.06420 3.31962 3.73651 3.92360 4.02345 4.07116 4.23367 4.26606 4.27057 4.33100 4.38018 4.39328 4.44731 4.49354 4.56816 4.61789 4.73308 4.76168 4.81084 4.85450 4.92865 4.96466 5.00678 5.05480 5.08962 5.12377 5.16065 5.17546 5.20387 5.24593 5.27499 5.32896 5.35434 5.38104 5.42810 5.47986 5.53335 5.54309 5.55854 5.65542 5.71834 5.72775 5.78008 6.12846 6.62230 6.80235 6.86817 7.36718 8.90807 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.014626 B = 0.007076 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.922772 B = 3956.222871 C = 4885.945063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.097 4.097 4 C 0.082 3.918 5 H 0.047 0.953 6 C -0.183 4.183 7 N -0.525 5.525 8 C 0.178 3.822 9 C -0.502 4.502 10 H 0.036 0.964 11 C 0.007 3.993 12 N -0.951 5.951 13 Si 0.938 3.062 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.253 1.253 17 C 0.067 3.933 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.166 4.166 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.039 0.961 35 H -0.011 1.011 36 H 0.018 0.982 37 H 0.264 0.736 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 14.370 -8.668 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.135 4.135 4 C -0.027 4.027 5 H 0.065 0.935 6 C -0.241 4.241 7 N -0.247 5.247 8 C 0.051 3.949 9 C -0.541 4.541 10 H 0.054 0.946 11 C -0.189 4.189 12 N -0.593 5.593 13 Si 0.762 3.238 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.177 1.177 17 C -0.040 4.040 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.164 4.164 21 C -0.150 4.150 22 C -0.166 4.166 23 C -0.156 4.156 24 C -0.205 4.205 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.006 0.994 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.137 0.863 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.094 0.906 51 H 0.089 0.911 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.238 13.783 -8.648 21.621 hybrid contribution 1.950 0.116 0.132 1.958 sum -12.288 13.899 -8.516 20.413 Atomic orbital electron populations 1.21723 0.94489 1.01562 1.02104 1.21355 0.96151 0.96881 1.01072 1.21624 0.92882 0.97035 1.01911 1.21622 0.96119 0.92866 0.92110 0.93479 1.22705 1.00557 0.98122 1.02689 1.62179 1.13991 1.46642 1.01882 1.19848 0.86325 0.93600 0.95110 1.21370 0.94224 1.15969 1.22529 0.94590 1.25759 1.00730 0.95504 0.96924 1.70054 1.19468 1.28739 1.40993 0.85855 0.79019 0.78573 0.80356 1.19458 1.20858 1.17664 1.22413 0.99281 0.91620 0.90670 1.21574 0.98957 0.98544 0.95392 1.21809 0.96979 0.99492 0.97276 1.21817 0.97878 0.95668 1.01074 1.21685 0.98839 0.95091 0.99397 1.21871 0.94248 1.01198 0.99294 1.21792 0.96637 0.97329 0.99811 1.22730 0.98802 0.97899 1.01037 0.91986 0.93086 0.92155 0.92829 0.94683 0.90933 0.90994 0.90154 0.91759 0.94192 0.99385 0.96384 0.92735 0.86273 0.94771 0.93041 0.91906 0.90698 0.91817 0.91233 0.90967 0.91236 0.91724 0.91182 0.92209 0.90630 0.91095 0.94569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.12 -3.63 5.87 30.59 0.18 -3.45 16 3 C -0.10 -2.79 4.60 30.59 0.14 -2.65 16 4 C 0.08 2.99 2.22 44.91 0.10 3.09 16 5 H 0.05 2.13 7.02 -2.39 -0.02 2.11 16 6 C -0.18 -5.75 7.38 71.98 0.53 -5.22 16 7 N -0.52 -21.00 3.57 -850.39 -3.04 -24.04 16 8 C 0.18 8.62 2.46 85.55 0.21 8.83 16 9 C -0.50 -29.63 9.10 25.60 0.23 -29.40 16 10 H 0.04 2.37 7.65 -2.91 -0.02 2.35 16 11 C 0.01 0.44 5.47 84.66 0.46 0.90 16 12 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 13 Si 0.94 45.76 27.57 68.60 1.89 47.65 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 16 H -0.25 -11.65 6.41 99.48 0.64 -11.01 16 17 C 0.07 2.11 1.01 44.92 0.05 2.16 16 18 C -0.11 -3.31 5.02 30.59 0.15 -3.15 16 19 C -0.12 -2.66 5.48 30.59 0.17 -2.50 16 20 C -0.13 -2.43 5.47 30.59 0.17 -2.26 16 21 C -0.11 -1.82 5.59 30.60 0.17 -1.65 16 22 C -0.13 -2.41 5.34 30.59 0.16 -2.25 16 23 C -0.12 -2.64 5.48 30.59 0.17 -2.47 16 24 C -0.17 -5.04 3.24 30.59 0.10 -4.94 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.94 7.55 -2.38 -0.02 1.92 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.82 5.69 -2.38 -0.01 1.80 16 32 H 0.08 2.16 4.23 -2.39 -0.01 2.15 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.44 5.43 -2.39 -0.01 1.42 16 35 H -0.01 -0.55 5.05 -2.39 -0.01 -0.56 16 36 H 0.02 0.91 5.40 -2.39 -0.01 0.89 16 37 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 38 H 0.12 3.21 0.44 -2.39 0.00 3.21 16 39 H 0.03 1.19 7.29 -2.39 -0.02 1.17 16 40 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.07 1.60 4.69 -2.39 -0.01 1.58 16 43 H 0.06 1.39 5.17 -2.38 -0.01 1.38 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 1.04 7.47 -2.38 -0.02 1.02 16 47 H 0.06 1.36 3.76 -2.38 -0.01 1.35 16 48 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.08 1.61 4.69 -2.39 -0.01 1.60 16 51 H 0.07 2.27 3.73 -2.39 -0.01 2.26 16 52 H 0.04 1.25 6.92 -2.39 -0.02 1.24 16 Total: -1.00 -66.31 347.56 3.68 -62.62 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.82 Total: 22.01 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 3.71 Total: -47.56 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.74 Total: -84.73 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.89 Total: 47.65 kcal Total: -66.31 3.68 -62.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257321245.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.945 kcal (2) G-P(sol) polarization free energy of solvation -66.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds