Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47309 * 2 1 4 4 C 1.53005 * 109.46721 * 184.20622 * 3 2 1 5 5 H 1.08998 * 109.47399 * 53.37688 * 4 3 2 6 6 C 1.53003 * 109.46574 * 173.37084 * 4 3 2 7 7 N 1.46898 * 109.47306 * 293.37021 * 4 3 2 8 8 C 1.46890 * 110.99802 * 141.98792 * 7 4 3 9 9 C 1.50695 * 109.47636 * 288.48180 * 8 7 4 10 10 H 1.08008 * 119.99589 * 2.11504 * 9 8 7 11 11 C 1.37870 * 120.00589 * 182.11814 * 9 8 7 12 12 N 1.31515 * 119.99923 * 5.65161 * 11 9 8 13 13 Si 1.86806 * 120.00131 * 185.65364 * 11 9 8 14 14 H 1.48495 * 109.47200 * 94.94303 * 13 11 9 15 15 H 1.48505 * 109.47017 * 214.94042 * 13 11 9 16 16 H 1.48493 * 109.46906 * 334.93884 * 13 11 9 17 17 C 1.46906 * 110.99789 * 265.94516 * 7 4 3 18 18 C 1.52984 * 109.46421 * 181.71787 * 17 7 4 19 19 C 1.52996 * 109.49145 * 127.06793 * 18 17 7 20 20 C 1.52990 * 109.47294 * 44.01199 * 19 18 17 21 21 C 1.53017 * 109.46420 * 75.94523 * 20 19 18 22 22 C 1.52995 * 109.45724 * 284.04981 * 21 20 19 23 23 C 1.52981 * 109.49969 * 315.99575 * 22 21 20 24 24 C 1.52994 * 109.47189 * 61.71127 * 17 7 4 25 25 H 1.08994 * 109.46984 * 304.53410 * 1 2 3 26 26 H 1.09003 * 109.46606 * 64.52850 * 1 2 3 27 27 H 1.08995 * 109.47344 * 184.53126 * 1 2 3 28 28 H 1.09006 * 109.46722 * 240.00010 * 2 1 3 29 29 H 1.09000 * 109.46784 * 120.00531 * 2 1 3 30 30 H 1.08995 * 109.46911 * 64.20910 * 3 2 1 31 31 H 1.08996 * 109.46951 * 304.20300 * 3 2 1 32 32 H 1.09002 * 109.47139 * 173.38604 * 6 4 3 33 33 H 1.09005 * 109.47140 * 293.38658 * 6 4 3 34 34 H 1.08997 * 109.47338 * 53.38692 * 6 4 3 35 35 H 1.08997 * 109.47520 * 48.48587 * 8 7 4 36 36 H 1.09003 * 109.47013 * 168.47993 * 8 7 4 37 37 H 0.97002 * 119.99960 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.46547 * 301.70964 * 17 7 4 39 39 H 1.08999 * 109.46283 * 247.06967 * 18 17 7 40 40 H 1.08994 * 109.47021 * 7.06443 * 18 17 7 41 41 H 1.09010 * 109.46842 * 164.00637 * 19 18 17 42 42 H 1.08994 * 109.47306 * 284.00603 * 19 18 17 43 43 H 1.08998 * 109.47004 * 315.94608 * 20 19 18 44 44 H 1.09004 * 109.47544 * 195.94094 * 20 19 18 45 45 H 1.09000 * 109.47709 * 164.05883 * 21 20 19 46 46 H 1.08998 * 109.48074 * 44.04728 * 21 20 19 47 47 H 1.09001 * 109.46838 * 195.98381 * 22 21 20 48 48 H 1.09005 * 109.45743 * 75.99868 * 22 21 20 49 49 H 1.08996 * 109.47305 * 352.93501 * 23 22 21 50 50 H 1.09004 * 109.46621 * 232.93892 * 23 22 21 51 51 H 1.09000 * 109.47921 * 315.93821 * 24 17 7 52 52 H 1.09002 * 109.48216 * 75.95324 * 24 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5665 1.4436 -0.1058 5 1 3.8714 0.8512 -0.9684 6 6 4.0650 2.8806 -0.2721 7 7 4.1424 0.8637 1.1148 8 6 5.3184 0.0408 0.8024 9 6 4.8768 -1.2275 0.1188 10 1 3.8307 -1.3892 -0.0959 11 6 5.8080 -2.1816 -0.2324 12 7 7.0649 -2.0374 0.1269 13 14 5.2846 -3.6792 -1.2188 14 1 5.5190 -3.4271 -2.6633 15 1 6.0775 -4.8582 -0.7870 16 1 3.8412 -3.9427 -0.9901 17 6 4.4767 1.9117 2.0885 18 6 5.1118 1.2742 3.3257 19 6 6.4473 1.9585 3.6240 20 6 6.2852 3.4738 3.4892 21 6 5.5485 4.0188 4.7147 22 6 4.0590 3.6877 4.6029 23 6 3.5782 3.9717 3.1787 24 6 3.2029 2.6555 2.4948 25 1 -0.3633 0.5825 0.8465 26 1 -0.3633 0.4420 -0.9278 27 1 -0.3634 -1.0244 0.0812 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.7397 1.9341 0.9253 31 1 1.6166 1.9776 -0.8499 32 1 5.1541 2.8946 -0.2297 33 1 3.7338 3.2710 -1.2345 34 1 3.6622 3.5000 0.5292 35 1 5.9854 0.5957 0.1428 36 1 5.8435 -0.2075 1.7248 37 1 7.7202 -2.7084 -0.1206 38 1 5.1798 2.6134 1.6399 39 1 4.4440 1.3933 4.1789 40 1 5.2805 0.2132 3.1417 41 1 6.7612 1.7156 4.6393 42 1 7.2002 1.6094 2.9176 43 1 5.7115 3.6993 2.5903 44 1 7.2682 3.9397 3.4193 45 1 5.6775 5.1000 4.7652 46 1 5.9556 3.5618 5.6166 47 1 3.4965 4.3023 5.3056 48 1 3.9028 2.6343 4.8357 49 1 4.3749 4.4589 2.6166 50 1 2.7061 4.6248 3.2131 51 1 2.6053 2.8644 1.6074 52 1 2.6262 2.0389 3.1843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257321247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = -13.087615 kcal Electronic energy + Delta-G solvation = -25078.490380 eV Core-core repulsion = 22077.347749 eV Total energy + Delta-G solvation = -3001.142631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29520 -38.29380 -35.50884 -34.62833 -33.80869 -32.46669 -31.46775 -28.35086 -27.58555 -27.29671 -25.88222 -23.89372 -22.94526 -22.06402 -21.56243 -20.71473 -19.58628 -18.27121 -17.12813 -17.00893 -16.51453 -15.81401 -15.60450 -15.33700 -15.06407 -14.85267 -14.40555 -14.17178 -14.07569 -13.93056 -13.70437 -13.51860 -13.30341 -13.07777 -12.75434 -12.73520 -12.66337 -12.62905 -12.20120 -12.16512 -12.02586 -11.75136 -11.69906 -11.69466 -11.51050 -11.42565 -11.36929 -11.24064 -11.08589 -10.92584 -10.58601 -10.39208 -10.36731 -8.67237 -8.13822 -6.20302 1.38239 1.38479 1.50320 2.41555 3.17221 3.37182 3.79852 3.98325 4.02448 4.12309 4.27376 4.31042 4.34653 4.35936 4.40304 4.45203 4.45753 4.53651 4.60254 4.60809 4.75254 4.83614 4.90801 4.94467 5.01237 5.03642 5.06500 5.09502 5.11074 5.14510 5.19329 5.20551 5.22420 5.28438 5.31203 5.32963 5.36384 5.46084 5.51068 5.52347 5.57516 5.62031 5.69650 5.75506 5.77471 5.78725 5.81191 6.23170 6.61553 6.92124 6.99278 7.47888 8.96179 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.006564 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.550268 B = 4264.393740 C = 5566.381109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.101 4.101 4 C 0.080 3.920 5 H 0.041 0.959 6 C -0.176 4.176 7 N -0.526 5.526 8 C 0.208 3.792 9 C -0.509 4.509 10 H 0.067 0.933 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.956 3.044 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.080 3.920 18 C -0.124 4.124 19 C -0.113 4.113 20 C -0.135 4.135 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.120 4.120 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.087 0.913 35 H -0.056 1.056 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 13.695 6.038 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.139 4.139 4 C -0.029 4.029 5 H 0.060 0.940 6 C -0.234 4.234 7 N -0.250 5.250 8 C 0.082 3.918 9 C -0.548 4.548 10 H 0.085 0.915 11 C -0.197 4.197 12 N -0.578 5.578 13 Si 0.781 3.219 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.189 1.189 17 C -0.027 4.027 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.172 4.172 21 C -0.147 4.147 22 C -0.164 4.164 23 C -0.159 4.159 24 C -0.157 4.157 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.106 0.894 35 H -0.039 1.039 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.105 0.895 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.569 13.295 6.245 17.530 hybrid contribution 1.412 -0.985 -1.110 2.048 sum -8.157 12.310 5.135 15.635 Atomic orbital electron populations 1.21732 0.94827 1.01344 1.02009 1.21344 0.95724 0.97303 1.00729 1.21844 0.92993 0.96664 1.02367 1.21646 0.95818 0.93216 0.92192 0.94011 1.22566 0.99747 0.97914 1.03177 1.62267 1.30408 1.21115 1.11171 1.19418 0.87342 0.91188 0.93871 1.21638 0.94149 1.02626 1.36364 0.91460 1.25814 0.95017 1.01329 0.97557 1.70106 1.03031 1.36890 1.47732 0.85568 0.78542 0.78931 0.78821 1.20325 1.21065 1.18899 1.21992 0.96507 0.92132 0.92109 1.22006 0.96882 0.99107 0.98075 1.21548 0.96544 0.96490 1.00493 1.22036 1.00576 0.94198 1.00415 1.21562 0.95379 1.00729 0.97053 1.21855 0.95750 1.01923 0.96868 1.21778 1.01373 0.96603 0.96117 1.22204 0.96300 0.96015 1.01211 0.91964 0.92234 0.93390 0.94896 0.93300 0.89725 0.91354 0.95302 0.91632 0.89435 1.03853 0.96398 0.93163 0.94112 0.89905 0.94104 0.91615 0.95519 0.90204 0.92523 0.91103 0.92060 0.91034 0.91870 0.91399 0.90644 0.89483 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.78 5.01 30.60 0.15 -3.63 16 3 C -0.10 -3.06 4.51 30.60 0.14 -2.92 16 4 C 0.08 2.99 2.01 44.92 0.09 3.08 16 5 H 0.04 1.88 7.04 -2.39 -0.02 1.86 16 6 C -0.18 -5.50 7.81 71.98 0.56 -4.94 16 7 N -0.53 -21.92 3.79 -850.47 -3.22 -25.15 16 8 C 0.21 11.12 4.34 85.56 0.37 11.49 16 9 C -0.51 -29.13 8.36 25.60 0.21 -28.92 16 10 H 0.07 3.77 6.53 -2.91 -0.02 3.75 16 11 C 0.00 0.00 5.45 84.65 0.46 0.46 16 12 N -0.94 -57.76 13.30 21.44 0.29 -57.48 16 13 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 16 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 17 C 0.08 2.75 0.96 44.91 0.04 2.79 16 18 C -0.12 -4.35 4.64 30.59 0.14 -4.21 16 19 C -0.11 -3.63 5.71 30.59 0.17 -3.45 16 20 C -0.14 -3.48 5.33 30.60 0.16 -3.32 16 21 C -0.11 -2.23 5.71 30.60 0.17 -2.06 16 22 C -0.13 -2.53 5.48 30.59 0.17 -2.36 16 23 C -0.12 -2.50 5.28 30.59 0.16 -2.34 16 24 C -0.12 -3.16 3.43 30.60 0.11 -3.05 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 1.22 7.82 -2.38 -0.02 1.21 16 29 H 0.05 1.91 7.81 -2.39 -0.02 1.89 16 30 H 0.08 2.31 4.91 -2.39 -0.01 2.30 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.01 7.28 -2.39 -0.02 0.99 16 33 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.09 2.31 4.67 -2.39 -0.01 2.30 16 35 H -0.06 -3.35 8.06 -2.39 -0.02 -3.37 16 36 H 0.02 1.05 5.44 -2.39 -0.01 1.04 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.04 1.46 3.41 -2.39 -0.01 1.45 16 39 H 0.08 2.56 4.69 -2.39 -0.01 2.55 16 40 H 0.04 1.81 5.62 -2.39 -0.01 1.79 16 41 H 0.07 1.92 7.82 -2.38 -0.02 1.90 16 42 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 2.16 2.83 -2.39 -0.01 2.15 16 44 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 47 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.06 1.44 4.69 -2.38 -0.01 1.43 16 49 H 0.07 1.45 5.47 -2.39 -0.01 1.44 16 50 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.09 2.21 2.98 -2.39 -0.01 2.20 16 52 H 0.06 1.65 7.47 -2.39 -0.02 1.63 16 Total: -1.00 -63.88 353.97 3.81 -60.08 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.88 Total: 21.10 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 3.84 Total: -46.27 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.94 Total: -82.63 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -63.88 3.81 -60.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257321247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.988 kcal (2) G-P(sol) polarization free energy of solvation -63.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds