Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46814 * 2 1 4 4 C 1.53000 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46768 * 304.99931 * 4 3 2 6 6 C 1.53005 * 109.47364 * 64.99607 * 4 3 2 7 7 C 1.53000 * 109.47235 * 185.00129 * 4 3 2 8 8 C 1.53000 * 109.47143 * 175.00140 * 7 4 3 9 9 C 1.53000 * 109.47143 * 179.97438 * 8 7 4 10 10 H 1.08995 * 109.47541 * 54.99536 * 9 8 7 11 11 C 1.52997 * 109.47302 * 174.99756 * 9 8 7 12 12 N 1.46901 * 109.46773 * 294.99415 * 9 8 7 13 13 C 1.46903 * 110.99794 * 155.00001 * 12 9 8 14 14 H 1.08998 * 109.41694 * 35.14572 * 13 12 9 15 15 C 1.52962 * 109.41381 * 155.00327 * 13 12 9 16 16 C 1.53222 * 109.40589 * 183.63515 * 15 13 12 17 17 C 1.51267 * 108.53721 * 305.37250 * 16 15 13 18 18 C 1.37885 * 120.84902 * 231.37209 * 17 16 15 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 17 16 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 17 16 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 17 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 17 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 17 24 24 C 1.51269 * 118.30147 * 51.09457 * 17 16 15 25 25 C 1.52795 * 108.76389 * 308.96345 * 24 17 16 26 26 H 1.08999 * 109.47063 * 60.00432 * 1 2 3 27 27 H 1.09000 * 109.46566 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46644 * 300.00041 * 1 2 3 29 29 H 1.08999 * 109.47280 * 240.00364 * 2 1 3 30 30 H 1.08999 * 109.47063 * 119.99568 * 2 1 3 31 31 H 1.08994 * 109.47499 * 59.99760 * 3 2 1 32 32 H 1.08999 * 109.46953 * 299.99636 * 3 2 1 33 33 H 1.09002 * 109.46773 * 300.00435 * 6 4 3 34 34 H 1.08996 * 109.46555 * 60.00066 * 6 4 3 35 35 H 1.08995 * 109.46986 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47159 * 54.99581 * 7 4 3 37 37 H 1.09001 * 109.46599 * 294.99739 * 7 4 3 38 38 H 1.08998 * 109.47549 * 59.99680 * 8 7 4 39 39 H 1.09001 * 109.47046 * 299.99326 * 8 7 4 40 40 H 1.08999 * 109.47241 * 179.97438 * 11 9 8 41 41 H 1.08998 * 109.46855 * 299.99926 * 11 9 8 42 42 H 1.09003 * 109.47175 * 59.99738 * 11 9 8 43 43 H 1.00892 * 111.00356 * 278.95267 * 12 9 8 44 44 H 1.08998 * 109.48271 * 63.65329 * 15 13 12 45 45 H 1.09002 * 109.49233 * 303.62199 * 15 13 12 46 46 H 1.09005 * 109.62896 * 185.65445 * 16 15 13 47 47 H 1.09000 * 109.62600 * 65.08675 * 16 15 13 48 48 H 0.97001 * 119.99646 * 179.97438 * 19 18 17 49 49 H 1.08990 * 109.62534 * 68.61908 * 24 17 16 50 50 H 1.09004 * 109.62338 * 189.19499 * 24 17 16 51 51 H 1.09004 * 109.33948 * 294.45701 * 25 24 17 52 52 H 1.08997 * 109.56741 * 174.46587 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8531 0.8410 6 6 4.0795 0.8331 -1.3083 7 6 4.0800 2.8796 0.1251 8 6 5.6049 2.8705 0.2498 9 6 6.1149 4.3076 0.3749 10 1 5.6136 4.7999 1.2082 11 6 7.6244 4.2931 0.6245 12 7 5.8311 5.0378 -0.8677 13 6 5.7403 6.4829 -0.6201 14 1 6.4526 6.7630 0.1560 15 6 6.0674 7.2409 -1.9078 16 6 6.0617 8.7473 -1.6273 17 6 4.7320 9.1160 -1.0076 18 6 3.9761 10.1497 -1.5189 19 7 4.4091 10.8295 -2.5580 20 14 2.3370 10.5843 -0.7354 21 1 1.2548 9.8019 -1.3850 22 1 2.3798 10.2617 0.7135 23 1 2.0733 12.0351 -0.9119 24 6 4.2497 8.3176 0.1833 25 6 4.3237 6.8305 -0.1595 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7161 -0.1906 -1.3978 34 1 3.7158 1.4227 -2.1498 35 1 5.1695 0.8328 -1.3085 36 1 3.6457 3.3431 1.0109 37 1 3.7912 3.4463 -0.7601 38 1 6.0392 2.4071 -0.6360 39 1 5.8936 2.3038 1.1350 40 1 7.9878 5.3169 0.7132 41 1 7.8350 3.7513 1.5465 42 1 8.1257 3.8009 -0.2089 43 1 6.5235 4.8346 -1.5728 44 1 5.3193 7.0095 -2.6659 45 1 7.0525 6.9416 -2.2659 46 1 6.1948 9.2941 -2.5608 47 1 6.8683 8.9942 -0.9370 48 1 3.8771 11.5565 -2.9179 49 1 4.8855 8.5240 1.0441 50 1 3.2190 8.5885 0.4124 51 1 3.6168 6.6087 -0.9590 52 1 4.0729 6.2399 0.7216 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257469778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = -61.878525 kcal Electronic energy + Delta-G solvation = -23215.825015 eV Core-core repulsion = 20212.566652 eV Total energy + Delta-G solvation = -3003.258364 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.43168 -37.27930 -35.41238 -33.23107 -32.06333 -30.12298 -29.38520 -28.44806 -26.78092 -26.16372 -24.13213 -21.96490 -21.42421 -21.17897 -19.91763 -19.80589 -19.06825 -16.08760 -15.72096 -15.37484 -14.84578 -14.45158 -14.40136 -14.21634 -13.77786 -13.41904 -13.18497 -12.91300 -12.80263 -12.59600 -12.46433 -12.19413 -12.05660 -11.89112 -11.81385 -11.53269 -11.43877 -11.35622 -11.16302 -10.93566 -10.76615 -10.74341 -10.55767 -10.45902 -10.26039 -10.19628 -10.06446 -9.97552 -9.85783 -9.46196 -8.84567 -8.55022 -8.41648 -7.79644 -6.05089 -3.94728 3.30800 3.38950 3.41015 4.43157 4.59512 4.63608 4.81018 4.90898 5.06001 5.08889 5.22402 5.23890 5.35875 5.38636 5.47115 5.56762 5.62989 5.66793 5.74843 5.79743 5.81822 5.85376 5.89090 5.90108 5.96450 5.99549 6.07533 6.11839 6.17337 6.21287 6.25934 6.29309 6.33760 6.44339 6.54118 6.62353 6.71927 6.76947 6.87687 6.97233 7.04556 7.13053 7.17511 7.52420 7.67381 7.75433 7.81000 7.90816 7.98944 8.45371 9.02779 9.60424 11.04838 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.004009 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.967115 B = 6982.839051 C = 8268.489245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.092 4.092 5 H 0.061 0.939 6 C -0.147 4.147 7 C -0.107 4.107 8 C -0.103 4.103 9 C 0.081 3.919 10 H 0.074 0.926 11 C -0.180 4.180 12 N -0.682 5.682 13 C 0.102 3.898 14 H 0.030 0.970 15 C -0.107 4.107 16 C 0.011 3.989 17 C -0.484 4.484 18 C 0.074 3.926 19 N -0.893 5.893 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.268 1.268 23 H -0.291 1.291 24 C -0.017 4.017 25 C -0.089 4.089 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.331 0.669 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.056 0.944 47 H 0.000 1.000 48 H 0.263 0.737 49 H 0.012 0.988 50 H 0.028 0.972 51 H 0.054 0.946 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -19.494 5.035 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.110 4.110 5 H 0.079 0.921 6 C -0.204 4.204 7 C -0.144 4.144 8 C -0.141 4.141 9 C -0.030 4.030 10 H 0.093 0.907 11 C -0.240 4.240 12 N -0.312 5.312 13 C -0.007 4.007 14 H 0.048 0.952 15 C -0.146 4.146 16 C -0.027 4.027 17 C -0.503 4.503 18 C -0.128 4.128 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.193 1.193 23 H -0.217 1.217 24 C -0.055 4.055 25 C -0.128 4.128 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.149 0.851 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.018 0.982 48 H 0.073 0.927 49 H 0.030 0.970 50 H 0.047 0.953 51 H 0.073 0.927 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.376 -19.437 4.941 20.102 hybrid contribution 0.084 0.514 0.514 0.732 sum -1.291 -18.923 5.455 19.735 Atomic orbital electron populations 1.21788 0.96225 1.01215 1.01858 1.21588 0.95520 0.97438 1.01735 1.21668 0.95304 0.96211 1.02158 1.21179 0.94821 0.97210 0.97811 0.92056 1.21902 1.00911 1.00020 0.97565 1.21536 0.94968 0.95032 1.02906 1.21582 0.96181 0.95499 1.00807 1.21598 0.93041 0.94729 0.93598 0.90746 1.22502 0.98193 1.01788 1.01468 1.60727 1.53115 1.08829 1.08509 1.21414 0.97228 0.84625 0.97429 0.95212 1.21791 0.97694 0.99332 0.95768 1.19352 0.95029 0.90123 0.98148 1.20040 1.04107 1.14000 1.12127 1.24846 0.97685 0.95634 0.94634 1.69841 1.38401 1.21516 1.23302 0.86664 0.84352 0.77185 0.80173 1.20410 1.19289 1.21747 1.19691 0.96586 0.92499 0.96722 1.21453 0.95436 0.97416 0.98467 0.92740 0.93126 0.92860 0.91959 0.92435 0.92187 0.91874 0.93286 0.92583 0.92726 0.92821 0.90207 0.92098 0.92897 0.92681 0.92755 0.92859 0.85074 0.92509 0.95670 0.92493 0.98168 0.92702 0.96990 0.95348 0.92677 0.95374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.09 5.69 -26.73 -0.15 -1.24 16 3 C -0.12 -1.16 4.68 -26.73 -0.13 -1.28 16 4 C -0.09 -0.94 2.39 -90.62 -0.22 -1.15 16 5 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 6 C -0.15 -1.43 8.70 37.16 0.32 -1.11 16 7 C -0.11 -1.29 4.57 -26.73 -0.12 -1.41 16 8 C -0.10 -1.19 4.65 -26.73 -0.12 -1.32 16 9 C 0.08 1.09 2.38 -67.71 -0.16 0.93 16 10 H 0.07 1.12 7.07 -51.93 -0.37 0.75 16 11 C -0.18 -2.21 9.15 37.16 0.34 -1.87 16 12 N -0.68 -10.70 5.50 -99.78 -0.55 -11.25 16 13 C 0.10 1.95 2.21 -67.75 -0.15 1.80 16 14 H 0.03 0.60 7.11 -51.93 -0.37 0.23 16 15 C -0.11 -2.29 5.24 -26.64 -0.14 -2.43 16 16 C 0.01 0.29 5.97 -27.49 -0.16 0.12 16 17 C -0.48 -12.94 5.52 -98.92 -0.55 -13.49 16 18 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 19 N -0.89 -26.07 12.73 55.43 0.71 -25.37 16 20 Si 0.89 21.54 27.26 -169.99 -4.63 16.91 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.31 6.47 56.52 0.37 -5.95 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C -0.02 -0.40 5.56 -27.71 -0.15 -0.56 16 25 C -0.09 -1.86 5.42 -26.86 -0.15 -2.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.53 6.57 -51.93 -0.34 0.18 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.14 7.75 -51.93 -0.40 0.73 16 38 H 0.06 0.70 6.57 -51.93 -0.34 0.35 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.74 7.42 -51.93 -0.39 0.36 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.61 8.13 -51.93 -0.42 0.18 16 43 H 0.33 4.95 8.04 -39.30 -0.32 4.64 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 46 H 0.06 1.57 7.07 -51.93 -0.37 1.21 16 47 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.03 0.67 4.79 -51.93 -0.25 0.42 16 51 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 52 H 0.03 0.54 7.35 -51.93 -0.38 0.15 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -27.23 383.17 -10.52 -37.76 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -10.55 Total: 0.12 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -1.27 Total: -23.94 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.16 Total: -36.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.63 Total: 16.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.23 -10.52 -37.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257469778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.123 kcal (2) G-P(sol) polarization free energy of solvation -27.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds