Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46814 * 2 1 4 4 C 1.53000 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46768 * 304.99931 * 4 3 2 6 6 C 1.53005 * 109.47364 * 64.99607 * 4 3 2 7 7 C 1.53000 * 109.47235 * 185.00129 * 4 3 2 8 8 C 1.53000 * 109.47143 * 175.00140 * 7 4 3 9 9 C 1.53000 * 109.47143 * 179.97438 * 8 7 4 10 10 H 1.08995 * 109.47541 * 54.99536 * 9 8 7 11 11 C 1.52997 * 109.47302 * 174.99756 * 9 8 7 12 12 N 1.46901 * 109.46773 * 294.99415 * 9 8 7 13 13 C 1.46903 * 110.99794 * 155.00001 * 12 9 8 14 14 H 1.08998 * 109.41694 * 35.14572 * 13 12 9 15 15 C 1.52962 * 109.41381 * 155.00327 * 13 12 9 16 16 C 1.53222 * 109.40589 * 183.63515 * 15 13 12 17 17 C 1.51267 * 108.53721 * 305.37250 * 16 15 13 18 18 C 1.37885 * 120.84902 * 231.37209 * 17 16 15 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 17 16 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 17 16 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 17 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 17 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 17 24 24 C 1.51269 * 118.30147 * 51.09457 * 17 16 15 25 25 C 1.52795 * 108.76389 * 308.96345 * 24 17 16 26 26 H 1.08999 * 109.47063 * 60.00432 * 1 2 3 27 27 H 1.09000 * 109.46566 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46644 * 300.00041 * 1 2 3 29 29 H 1.08999 * 109.47280 * 240.00364 * 2 1 3 30 30 H 1.08999 * 109.47063 * 119.99568 * 2 1 3 31 31 H 1.08994 * 109.47499 * 59.99760 * 3 2 1 32 32 H 1.08999 * 109.46953 * 299.99636 * 3 2 1 33 33 H 1.09002 * 109.46773 * 300.00435 * 6 4 3 34 34 H 1.08996 * 109.46555 * 60.00066 * 6 4 3 35 35 H 1.08995 * 109.46986 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47159 * 54.99581 * 7 4 3 37 37 H 1.09001 * 109.46599 * 294.99739 * 7 4 3 38 38 H 1.08998 * 109.47549 * 59.99680 * 8 7 4 39 39 H 1.09001 * 109.47046 * 299.99326 * 8 7 4 40 40 H 1.08999 * 109.47241 * 179.97438 * 11 9 8 41 41 H 1.08998 * 109.46855 * 299.99926 * 11 9 8 42 42 H 1.09003 * 109.47175 * 59.99738 * 11 9 8 43 43 H 1.00892 * 111.00356 * 278.95267 * 12 9 8 44 44 H 1.08998 * 109.48271 * 63.65329 * 15 13 12 45 45 H 1.09002 * 109.49233 * 303.62199 * 15 13 12 46 46 H 1.09005 * 109.62896 * 185.65445 * 16 15 13 47 47 H 1.09000 * 109.62600 * 65.08675 * 16 15 13 48 48 H 0.97001 * 119.99646 * 179.97438 * 19 18 17 49 49 H 1.08990 * 109.62534 * 68.61908 * 24 17 16 50 50 H 1.09004 * 109.62338 * 189.19499 * 24 17 16 51 51 H 1.09004 * 109.33948 * 294.45701 * 25 24 17 52 52 H 1.08997 * 109.56741 * 174.46587 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8531 0.8410 6 6 4.0795 0.8331 -1.3083 7 6 4.0800 2.8796 0.1251 8 6 5.6049 2.8705 0.2498 9 6 6.1149 4.3076 0.3749 10 1 5.6136 4.7999 1.2082 11 6 7.6244 4.2931 0.6245 12 7 5.8311 5.0378 -0.8677 13 6 5.7403 6.4829 -0.6201 14 1 6.4526 6.7630 0.1560 15 6 6.0674 7.2409 -1.9078 16 6 6.0617 8.7473 -1.6273 17 6 4.7320 9.1160 -1.0076 18 6 3.9761 10.1497 -1.5189 19 7 4.4091 10.8295 -2.5580 20 14 2.3370 10.5843 -0.7354 21 1 1.2548 9.8019 -1.3850 22 1 2.3798 10.2617 0.7135 23 1 2.0733 12.0351 -0.9119 24 6 4.2497 8.3176 0.1833 25 6 4.3237 6.8305 -0.1595 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7161 -0.1906 -1.3978 34 1 3.7158 1.4227 -2.1498 35 1 5.1695 0.8328 -1.3085 36 1 3.6457 3.3431 1.0109 37 1 3.7912 3.4463 -0.7601 38 1 6.0392 2.4071 -0.6360 39 1 5.8936 2.3038 1.1350 40 1 7.9878 5.3169 0.7132 41 1 7.8350 3.7513 1.5465 42 1 8.1257 3.8009 -0.2089 43 1 6.5235 4.8346 -1.5728 44 1 5.3193 7.0095 -2.6659 45 1 7.0525 6.9416 -2.2659 46 1 6.1948 9.2941 -2.5608 47 1 6.8683 8.9942 -0.9370 48 1 3.8771 11.5565 -2.9179 49 1 4.8855 8.5240 1.0441 50 1 3.2190 8.5885 0.4124 51 1 3.6168 6.6087 -0.9590 52 1 4.0729 6.2399 0.7216 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257469778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = -74.384773 kcal Electronic energy + Delta-G solvation = -23216.367327 eV Core-core repulsion = 20212.566652 eV Total energy + Delta-G solvation = -3003.800675 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.73992 -38.38750 -36.78443 -34.50155 -33.53010 -31.73604 -31.07225 -29.43865 -27.83793 -27.53493 -25.05275 -23.64566 -23.24445 -22.10538 -21.06432 -20.83674 -20.63046 -18.03685 -16.84173 -16.41256 -16.26432 -16.02079 -15.33910 -15.28983 -15.05865 -14.65066 -14.46750 -14.37340 -14.29657 -13.87023 -13.66048 -13.59031 -13.30121 -13.14967 -12.87459 -12.71859 -12.66582 -12.58957 -12.34755 -12.28778 -12.15696 -11.96292 -11.83589 -11.77796 -11.60459 -11.38628 -11.37081 -11.27020 -11.12435 -10.91679 -10.70705 -10.53937 -10.44568 -9.11370 -8.16732 -6.09851 1.37420 1.39722 1.48813 2.40879 3.08248 3.40122 3.75643 4.03883 4.09272 4.13481 4.19067 4.28019 4.33772 4.36228 4.47654 4.57077 4.59749 4.63347 4.69533 4.78488 4.85666 4.88051 4.90465 4.93229 4.98216 5.01146 5.07232 5.08685 5.09746 5.14971 5.17078 5.21784 5.26105 5.28065 5.32116 5.33487 5.35357 5.36817 5.47160 5.48373 5.53876 5.63713 5.64916 5.68361 5.77807 5.78684 5.91307 6.36686 6.38241 6.70453 6.96534 7.47759 8.94599 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.004009 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.967115 B = 6982.839051 C = 8268.489245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.086 4.086 5 H 0.072 0.928 6 C -0.144 4.144 7 C -0.103 4.103 8 C -0.094 4.094 9 C 0.080 3.920 10 H 0.061 0.939 11 C -0.175 4.175 12 N -0.679 5.679 13 C 0.115 3.885 14 H 0.026 0.974 15 C -0.097 4.097 16 C 0.007 3.993 17 C -0.496 4.496 18 C 0.019 3.981 19 N -0.934 5.934 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.255 1.255 23 H -0.291 1.291 24 C -0.019 4.019 25 C -0.082 4.082 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.339 0.661 44 H 0.040 0.960 45 H 0.047 0.953 46 H 0.024 0.976 47 H -0.004 1.004 48 H 0.262 0.738 49 H 0.015 0.985 50 H 0.028 0.972 51 H 0.040 0.960 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -22.100 6.446 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.104 4.104 5 H 0.090 0.910 6 C -0.201 4.201 7 C -0.141 4.141 8 C -0.132 4.132 9 C -0.030 4.030 10 H 0.079 0.921 11 C -0.234 4.234 12 N -0.310 5.310 13 C 0.006 3.994 14 H 0.044 0.956 15 C -0.135 4.135 16 C -0.031 4.031 17 C -0.515 4.515 18 C -0.179 4.179 19 N -0.574 5.574 20 Si 0.767 3.233 21 H -0.200 1.200 22 H -0.179 1.179 23 H -0.218 1.218 24 C -0.057 4.057 25 C -0.120 4.120 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.158 0.842 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.014 0.986 48 H 0.071 0.929 49 H 0.033 0.967 50 H 0.047 0.953 51 H 0.059 0.941 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.370 -22.067 6.366 23.008 hybrid contribution 0.146 1.307 0.079 1.318 sum -1.223 -20.760 6.446 21.772 Atomic orbital electron populations 1.21797 0.95981 1.01839 1.01568 1.21562 0.95757 0.96401 1.02226 1.21653 0.95334 0.97071 1.01257 1.21127 0.94791 0.96059 0.98472 0.91000 1.21875 1.01112 1.00422 0.96721 1.21472 0.95492 0.95910 1.01241 1.21523 0.95554 0.94212 1.01936 1.21670 0.94126 0.95354 0.91852 0.92099 1.22430 0.96856 1.01237 1.02863 1.60630 1.53857 1.06520 1.09972 1.21098 0.95953 0.86610 0.95759 0.95622 1.21589 0.98542 0.96718 0.96635 1.19323 0.94646 0.92712 0.96373 1.20663 1.04374 1.13790 1.12704 1.25625 1.01029 0.95936 0.95306 1.69978 1.39853 1.22484 1.25079 0.85804 0.80651 0.76809 0.80036 1.20019 1.17888 1.21776 1.19710 0.96418 0.94033 0.95505 1.21316 0.96244 0.95618 0.98835 0.93230 0.92055 0.92997 0.91601 0.91718 0.92727 0.93178 0.92098 0.93824 0.92324 0.93713 0.92670 0.91468 0.91078 0.94238 0.91011 0.91757 0.84221 0.94108 0.93418 0.95736 0.98565 0.92891 0.96692 0.95346 0.94096 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -1.88 5.69 30.60 0.17 -1.70 16 3 C -0.12 -2.16 4.68 30.60 0.14 -2.01 16 4 C -0.09 -1.58 2.39 -10.79 -0.03 -1.60 16 5 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.14 -2.50 8.70 71.98 0.63 -1.88 16 7 C -0.10 -2.32 4.57 30.59 0.14 -2.18 16 8 C -0.09 -1.92 4.65 30.59 0.14 -1.78 16 9 C 0.08 1.97 2.38 44.91 0.11 2.08 16 10 H 0.06 1.69 7.07 -2.39 -0.02 1.67 16 11 C -0.18 -3.77 9.15 71.98 0.66 -3.11 16 12 N -0.68 -20.12 5.50 -469.60 -2.59 -22.71 16 13 C 0.12 4.28 2.21 44.89 0.10 4.38 16 14 H 0.03 0.99 7.11 -2.39 -0.02 0.98 16 15 C -0.10 -4.09 5.24 30.66 0.16 -3.93 16 16 C 0.01 0.39 5.97 30.10 0.18 0.56 16 17 C -0.50 -26.83 5.52 -16.17 -0.09 -26.92 16 18 C 0.02 1.05 5.46 84.66 0.46 1.52 16 19 N -0.93 -56.22 12.73 21.45 0.27 -55.95 16 20 Si 0.94 44.49 27.26 68.60 1.87 46.36 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.25 -11.37 6.47 99.48 0.64 -10.73 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 C -0.02 -0.87 5.56 29.96 0.17 -0.70 16 25 C -0.08 -3.32 5.42 30.51 0.17 -3.15 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.97 6.56 -2.39 -0.02 0.95 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.91 6.56 -2.39 -0.02 0.90 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.97 6.57 -2.39 -0.02 0.95 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.52 7.75 -2.39 -0.02 1.50 16 38 H 0.07 1.32 6.57 -2.39 -0.02 1.30 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 0.97 7.42 -2.39 -0.02 0.96 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 43 H 0.34 9.38 8.04 -89.70 -0.72 8.66 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16 46 H 0.02 1.39 7.07 -2.38 -0.02 1.37 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 49 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.03 1.31 4.79 -2.39 -0.01 1.30 16 51 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 52 H 0.05 1.77 7.35 -2.39 -0.02 1.75 16 Total: -1.00 -59.13 383.17 3.44 -55.69 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.06 Total: 18.62 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 3.82 Total: -42.02 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.31 Total: -78.65 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.87 Total: 46.36 kcal Total: -59.13 3.44 -55.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257469778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.691 kcal (2) G-P(sol) polarization free energy of solvation -59.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds