Wall clock time and date at job start Tue Mar 31 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 C 1.53001 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46955 * 54.99923 * 4 3 2 6 6 C 1.53001 * 109.47232 * 294.99833 * 4 3 2 7 7 C 1.53002 * 109.47027 * 175.00142 * 4 3 2 8 8 C 1.53003 * 109.47009 * 185.00123 * 7 4 3 9 9 C 1.52998 * 109.47153 * 179.97438 * 8 7 4 10 10 H 1.08999 * 109.47156 * 305.00450 * 9 8 7 11 11 C 1.52997 * 109.47393 * 185.00041 * 9 8 7 12 12 N 1.46906 * 109.46884 * 65.00017 * 9 8 7 13 13 C 1.46902 * 110.99573 * 204.99987 * 12 9 8 14 14 H 1.08994 * 109.41740 * 324.99818 * 13 12 9 15 15 C 1.52962 * 109.41242 * 84.86318 * 13 12 9 16 16 C 1.53240 * 109.39802 * 183.77257 * 15 13 12 17 17 C 1.51270 * 108.48210 * 305.26299 * 16 15 13 18 18 C 1.37882 * 120.84911 * 231.40759 * 17 16 15 19 19 N 1.31516 * 119.99909 * 179.97438 * 18 17 16 20 20 Si 1.86797 * 120.00006 * 359.97438 * 18 17 16 21 21 H 1.48499 * 109.47514 * 89.99282 * 20 18 17 22 22 H 1.48500 * 109.47116 * 209.99855 * 20 18 17 23 23 H 1.48507 * 109.46717 * 329.99271 * 20 18 17 24 24 C 1.51274 * 118.30300 * 51.38993 * 17 16 15 25 25 C 1.52957 * 109.40852 * 205.13876 * 13 12 9 26 26 H 1.08995 * 109.47568 * 59.99946 * 1 2 3 27 27 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47180 * 299.99572 * 1 2 3 29 29 H 1.09002 * 109.46883 * 239.99970 * 2 1 3 30 30 H 1.09004 * 109.46998 * 119.99854 * 2 1 3 31 31 H 1.09002 * 109.47285 * 60.00216 * 3 2 1 32 32 H 1.09000 * 109.47386 * 300.00200 * 3 2 1 33 33 H 1.08998 * 109.46963 * 300.00655 * 6 4 3 34 34 H 1.09004 * 109.46739 * 59.99949 * 6 4 3 35 35 H 1.08998 * 109.47059 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47170 * 64.99777 * 7 4 3 37 37 H 1.09003 * 109.46742 * 305.00002 * 7 4 3 38 38 H 1.08998 * 109.47116 * 59.99377 * 8 7 4 39 39 H 1.08998 * 109.46602 * 299.99779 * 8 7 4 40 40 H 1.09005 * 109.46664 * 300.00177 * 11 9 8 41 41 H 1.09002 * 109.46897 * 59.99527 * 11 9 8 42 42 H 1.08994 * 109.47330 * 180.02562 * 11 9 8 43 43 H 1.00896 * 111.00309 * 81.04399 * 12 9 8 44 44 H 1.09000 * 109.47852 * 303.67870 * 15 13 12 45 45 H 1.08994 * 109.48945 * 63.71843 * 15 13 12 46 46 H 1.08998 * 109.61982 * 185.58243 * 16 15 13 47 47 H 1.09009 * 109.84596 * 65.06965 * 16 15 13 48 48 H 0.96995 * 119.99734 * 180.02562 * 19 18 17 49 49 H 1.08995 * 109.62410 * 188.94148 * 24 17 16 50 50 H 1.08994 * 109.78046 * 68.45996 * 24 17 16 51 51 H 1.08998 * 109.48994 * 296.27471 * 25 13 12 52 52 H 1.09004 * 109.48352 * 56.30895 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8795 -0.1250 8 6 5.6049 2.8703 -0.2498 9 6 6.1150 4.3073 -0.3762 10 1 5.6135 4.7988 -1.2099 11 6 7.6244 4.2927 -0.6257 12 7 5.8310 5.0386 0.8659 13 6 5.7403 6.4835 0.6169 14 1 6.4507 6.7625 -0.1611 15 6 4.3228 6.8326 0.1602 16 6 4.2534 8.3229 -0.1897 17 6 4.7362 9.1185 1.0029 18 6 3.9828 10.1539 1.5141 19 7 4.4184 10.8342 2.5519 20 14 2.3433 10.5904 0.7325 21 1 1.2608 9.8104 1.3844 22 1 2.0822 12.0417 0.9078 23 1 2.3836 10.2662 -0.7161 24 6 6.0667 8.7487 1.6207 25 6 6.0707 7.2426 1.9031 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.7157 1.4226 2.1498 34 1 3.7161 -0.1907 1.3979 35 1 5.1695 0.8335 1.3089 36 1 3.7913 3.4462 0.7601 37 1 3.6457 3.3429 -1.0109 38 1 5.8937 2.3035 -1.1349 39 1 6.0391 2.4069 0.6360 40 1 8.1257 3.8011 0.2081 41 1 7.8350 3.7500 -1.5473 42 1 7.9877 5.3164 -0.7153 43 1 6.5235 4.8359 1.5712 44 1 4.0685 6.2415 -0.7196 45 1 3.6179 6.6131 0.9620 46 1 3.2240 8.5972 -0.4203 47 1 4.8893 8.5311 -1.0503 48 1 3.8882 11.5624 2.9117 49 1 6.2021 9.2965 2.5532 50 1 6.8744 8.9941 0.9312 51 1 5.3236 7.0133 2.6629 52 1 7.0560 6.9421 2.2596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257469785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:57 Heat of formation + Delta-G solvation = -61.826928 kcal Electronic energy + Delta-G solvation = -23213.233157 eV Core-core repulsion = 20209.977030 eV Total energy + Delta-G solvation = -3003.256126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.42679 -37.27439 -35.40505 -33.23092 -32.06217 -30.10670 -29.37265 -28.44778 -26.78075 -26.16567 -24.13178 -21.96373 -21.42354 -21.17705 -19.91906 -19.80626 -19.07279 -16.08749 -15.71996 -15.37468 -14.84429 -14.44898 -14.40099 -14.21679 -13.77804 -13.41955 -13.18266 -12.91229 -12.79947 -12.58610 -12.46374 -12.19317 -12.05687 -11.89170 -11.81377 -11.53364 -11.43883 -11.35600 -11.16309 -10.93114 -10.76454 -10.74160 -10.55747 -10.45819 -10.25783 -10.19517 -10.06685 -9.97556 -9.86001 -9.46133 -8.84350 -8.55054 -8.41691 -7.79605 -6.05063 -3.94694 3.30806 3.38948 3.40946 4.43148 4.59505 4.63610 4.80990 4.90903 5.06029 5.08854 5.22419 5.23929 5.35896 5.38647 5.47099 5.56752 5.62967 5.66765 5.74849 5.79763 5.81834 5.85434 5.89161 5.90171 5.96569 5.99582 6.07527 6.11859 6.17361 6.21332 6.25942 6.29288 6.33749 6.44398 6.54152 6.62920 6.71990 6.77088 6.87027 6.97059 7.03752 7.13081 7.17438 7.52476 7.67513 7.75419 7.80833 7.90916 7.98999 8.45311 9.02790 9.60425 11.04890 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.004005 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.222607 B = 6989.556323 C = 8274.086135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.092 4.092 5 H 0.061 0.939 6 C -0.147 4.147 7 C -0.107 4.107 8 C -0.103 4.103 9 C 0.081 3.919 10 H 0.074 0.926 11 C -0.180 4.180 12 N -0.682 5.682 13 C 0.101 3.899 14 H 0.030 0.970 15 C -0.089 4.089 16 C -0.017 4.017 17 C -0.484 4.484 18 C 0.074 3.926 19 N -0.893 5.893 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.011 3.989 25 C -0.108 4.108 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.332 0.668 44 H 0.027 0.973 45 H 0.055 0.945 46 H 0.028 0.972 47 H 0.012 0.988 48 H 0.263 0.737 49 H 0.056 0.944 50 H 0.000 1.000 51 H 0.056 0.944 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -19.504 -5.027 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.110 4.110 5 H 0.079 0.921 6 C -0.204 4.204 7 C -0.144 4.144 8 C -0.141 4.141 9 C -0.030 4.030 10 H 0.093 0.907 11 C -0.239 4.239 12 N -0.312 5.312 13 C -0.007 4.007 14 H 0.048 0.952 15 C -0.127 4.127 16 C -0.055 4.055 17 C -0.503 4.503 18 C -0.128 4.128 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.193 1.193 24 C -0.026 4.026 25 C -0.146 4.146 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.046 0.954 47 H 0.031 0.969 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.018 0.982 51 H 0.075 0.925 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.397 -19.447 -4.933 20.111 hybrid contribution 0.087 0.521 -0.513 0.736 sum -1.310 -18.926 -5.445 19.737 Atomic orbital electron populations 1.21789 0.96225 1.01215 1.01858 1.21586 0.95519 0.97439 1.01735 1.21668 0.95304 0.96210 1.02158 1.21179 0.94821 0.97210 0.97811 0.92054 1.21902 1.00912 1.00022 0.97563 1.21537 0.94968 0.95030 1.02905 1.21582 0.96182 0.95499 1.00805 1.21599 0.93041 0.94720 0.93603 0.90748 1.22502 0.98192 1.01789 1.01467 1.60726 1.53120 1.08818 1.08521 1.21412 0.97243 0.84621 0.97428 0.95204 1.21523 0.95404 0.97356 0.98449 1.19774 0.96605 0.92481 0.96673 1.20043 1.04131 1.13994 1.12107 1.24847 0.97690 0.95612 0.94657 1.69840 1.38407 1.21430 1.23388 0.86665 0.84360 0.77184 0.80165 1.20405 1.21750 1.19286 1.19348 0.94997 0.90130 0.98163 1.21795 0.97677 0.99324 0.95792 0.92854 0.93126 0.92748 0.92435 0.91960 0.91874 0.92186 0.92589 0.93282 0.92724 0.90208 0.92821 0.92901 0.92096 0.92860 0.92755 0.92680 0.85070 0.95414 0.92640 0.95352 0.96931 0.92703 0.92518 0.98190 0.92507 0.95681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.09 5.69 -26.73 -0.15 -1.24 16 3 C -0.12 -1.16 4.68 -26.73 -0.13 -1.28 16 4 C -0.09 -0.93 2.39 -90.62 -0.22 -1.15 16 5 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 6 C -0.15 -1.43 8.70 37.16 0.32 -1.11 16 7 C -0.11 -1.29 4.57 -26.73 -0.12 -1.41 16 8 C -0.10 -1.19 4.65 -26.73 -0.12 -1.32 16 9 C 0.08 1.09 2.39 -67.71 -0.16 0.93 16 10 H 0.07 1.12 7.08 -51.93 -0.37 0.75 16 11 C -0.18 -2.21 9.15 37.16 0.34 -1.87 16 12 N -0.68 -10.70 5.51 -99.78 -0.55 -11.25 16 13 C 0.10 1.95 2.21 -67.75 -0.15 1.80 16 14 H 0.03 0.60 7.11 -51.93 -0.37 0.23 16 15 C -0.09 -1.85 5.43 -26.63 -0.14 -2.00 16 16 C -0.02 -0.41 5.60 -27.48 -0.15 -0.56 16 17 C -0.48 -12.94 5.51 -98.92 -0.55 -13.49 16 18 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 19 N -0.89 -26.08 12.73 55.43 0.71 -25.37 16 20 Si 0.89 21.54 27.27 -169.99 -4.64 16.90 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.31 6.46 56.52 0.37 -5.95 16 24 C 0.01 0.29 5.97 -27.48 -0.16 0.13 16 25 C -0.11 -2.29 5.24 -26.63 -0.14 -2.43 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 35 H 0.05 0.53 6.56 -51.93 -0.34 0.18 16 36 H 0.08 1.14 7.75 -51.93 -0.40 0.73 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.70 6.56 -51.93 -0.34 0.35 16 40 H 0.05 0.61 8.13 -51.93 -0.42 0.18 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.74 7.42 -51.93 -0.39 0.36 16 43 H 0.33 4.96 8.03 -39.29 -0.32 4.64 16 44 H 0.03 0.53 7.37 -51.93 -0.38 0.14 16 45 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.03 0.67 4.78 -51.93 -0.25 0.42 16 47 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 50 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 51 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 52 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -27.23 383.22 -10.52 -37.75 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -10.56 Total: 0.12 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -1.26 Total: -23.93 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.16 Total: -36.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.64 Total: 16.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.23 -10.52 -37.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257469785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.073 kcal (2) G-P(sol) polarization free energy of solvation -27.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds