Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 C 1.53001 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46955 * 54.99923 * 4 3 2 6 6 C 1.53001 * 109.47232 * 294.99833 * 4 3 2 7 7 C 1.53002 * 109.47027 * 175.00142 * 4 3 2 8 8 C 1.53003 * 109.47009 * 185.00123 * 7 4 3 9 9 C 1.52998 * 109.47153 * 179.97438 * 8 7 4 10 10 H 1.08999 * 109.47156 * 305.00450 * 9 8 7 11 11 C 1.52997 * 109.47393 * 185.00041 * 9 8 7 12 12 N 1.46906 * 109.46884 * 65.00017 * 9 8 7 13 13 C 1.46902 * 110.99573 * 204.99987 * 12 9 8 14 14 H 1.08994 * 109.41740 * 324.99818 * 13 12 9 15 15 C 1.52962 * 109.41242 * 84.86318 * 13 12 9 16 16 C 1.53240 * 109.39802 * 183.77257 * 15 13 12 17 17 C 1.51270 * 108.48210 * 305.26299 * 16 15 13 18 18 C 1.37882 * 120.84911 * 231.40759 * 17 16 15 19 19 N 1.31516 * 119.99909 * 179.97438 * 18 17 16 20 20 Si 1.86797 * 120.00006 * 359.97438 * 18 17 16 21 21 H 1.48499 * 109.47514 * 89.99282 * 20 18 17 22 22 H 1.48500 * 109.47116 * 209.99855 * 20 18 17 23 23 H 1.48507 * 109.46717 * 329.99271 * 20 18 17 24 24 C 1.51274 * 118.30300 * 51.38993 * 17 16 15 25 25 C 1.52957 * 109.40852 * 205.13876 * 13 12 9 26 26 H 1.08995 * 109.47568 * 59.99946 * 1 2 3 27 27 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47180 * 299.99572 * 1 2 3 29 29 H 1.09002 * 109.46883 * 239.99970 * 2 1 3 30 30 H 1.09004 * 109.46998 * 119.99854 * 2 1 3 31 31 H 1.09002 * 109.47285 * 60.00216 * 3 2 1 32 32 H 1.09000 * 109.47386 * 300.00200 * 3 2 1 33 33 H 1.08998 * 109.46963 * 300.00655 * 6 4 3 34 34 H 1.09004 * 109.46739 * 59.99949 * 6 4 3 35 35 H 1.08998 * 109.47059 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47170 * 64.99777 * 7 4 3 37 37 H 1.09003 * 109.46742 * 305.00002 * 7 4 3 38 38 H 1.08998 * 109.47116 * 59.99377 * 8 7 4 39 39 H 1.08998 * 109.46602 * 299.99779 * 8 7 4 40 40 H 1.09005 * 109.46664 * 300.00177 * 11 9 8 41 41 H 1.09002 * 109.46897 * 59.99527 * 11 9 8 42 42 H 1.08994 * 109.47330 * 180.02562 * 11 9 8 43 43 H 1.00896 * 111.00309 * 81.04399 * 12 9 8 44 44 H 1.09000 * 109.47852 * 303.67870 * 15 13 12 45 45 H 1.08994 * 109.48945 * 63.71843 * 15 13 12 46 46 H 1.08998 * 109.61982 * 185.58243 * 16 15 13 47 47 H 1.09009 * 109.84596 * 65.06965 * 16 15 13 48 48 H 0.96995 * 119.99734 * 180.02562 * 19 18 17 49 49 H 1.08995 * 109.62410 * 188.94148 * 24 17 16 50 50 H 1.08994 * 109.78046 * 68.45996 * 24 17 16 51 51 H 1.08998 * 109.48994 * 296.27471 * 25 13 12 52 52 H 1.09004 * 109.48352 * 56.30895 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8795 -0.1250 8 6 5.6049 2.8703 -0.2498 9 6 6.1150 4.3073 -0.3762 10 1 5.6135 4.7988 -1.2099 11 6 7.6244 4.2927 -0.6257 12 7 5.8310 5.0386 0.8659 13 6 5.7403 6.4835 0.6169 14 1 6.4507 6.7625 -0.1611 15 6 4.3228 6.8326 0.1602 16 6 4.2534 8.3229 -0.1897 17 6 4.7362 9.1185 1.0029 18 6 3.9828 10.1539 1.5141 19 7 4.4184 10.8342 2.5519 20 14 2.3433 10.5904 0.7325 21 1 1.2608 9.8104 1.3844 22 1 2.0822 12.0417 0.9078 23 1 2.3836 10.2662 -0.7161 24 6 6.0667 8.7487 1.6207 25 6 6.0707 7.2426 1.9031 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.7157 1.4226 2.1498 34 1 3.7161 -0.1907 1.3979 35 1 5.1695 0.8335 1.3089 36 1 3.7913 3.4462 0.7601 37 1 3.6457 3.3429 -1.0109 38 1 5.8937 2.3035 -1.1349 39 1 6.0391 2.4069 0.6360 40 1 8.1257 3.8011 0.2081 41 1 7.8350 3.7500 -1.5473 42 1 7.9877 5.3164 -0.7153 43 1 6.5235 4.8359 1.5712 44 1 4.0685 6.2415 -0.7196 45 1 3.6179 6.6131 0.9620 46 1 3.2240 8.5972 -0.4203 47 1 4.8893 8.5311 -1.0503 48 1 3.8882 11.5624 2.9117 49 1 6.2021 9.2965 2.5532 50 1 6.8744 8.9941 0.9312 51 1 5.3236 7.0133 2.6629 52 1 7.0560 6.9421 2.2596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257469785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = -74.331607 kcal Electronic energy + Delta-G solvation = -23213.775400 eV Core-core repulsion = 20209.977030 eV Total energy + Delta-G solvation = -3003.798370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.73144 -38.38321 -36.77951 -34.50147 -33.52695 -31.71521 -31.06610 -29.43841 -27.83875 -27.53439 -25.05179 -23.64448 -23.24456 -22.10477 -21.06534 -20.83885 -20.63069 -18.03724 -16.83973 -16.40989 -16.26418 -16.01970 -15.33800 -15.29098 -15.05726 -14.64949 -14.45708 -14.37099 -14.29370 -13.86950 -13.66075 -13.59078 -13.30256 -13.14966 -12.87389 -12.71329 -12.66524 -12.58855 -12.34711 -12.28401 -12.15668 -11.96035 -11.83829 -11.77590 -11.60727 -11.38619 -11.37008 -11.27010 -11.12388 -10.91585 -10.70521 -10.54030 -10.44583 -9.11333 -8.16690 -6.09794 1.37453 1.39732 1.48784 2.40893 3.08277 3.40138 3.75676 4.03907 4.09320 4.13556 4.19223 4.28183 4.33783 4.36271 4.47673 4.57096 4.59771 4.63373 4.69586 4.79053 4.85680 4.88018 4.90489 4.93270 4.98113 5.01122 5.07084 5.07829 5.09788 5.15101 5.17117 5.21770 5.25778 5.28157 5.32202 5.33534 5.35395 5.36855 5.47173 5.48388 5.53898 5.63880 5.64907 5.68378 5.77786 5.78699 5.91278 6.36702 6.38200 6.70468 6.96553 7.47778 8.94669 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.004005 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.222607 B = 6989.556323 C = 8274.086135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.086 4.086 5 H 0.072 0.928 6 C -0.144 4.144 7 C -0.103 4.103 8 C -0.094 4.094 9 C 0.080 3.920 10 H 0.061 0.939 11 C -0.175 4.175 12 N -0.679 5.679 13 C 0.115 3.885 14 H 0.026 0.974 15 C -0.081 4.081 16 C -0.019 4.019 17 C -0.496 4.496 18 C 0.019 3.981 19 N -0.934 5.934 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.254 1.254 24 C 0.008 3.992 25 C -0.097 4.097 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.339 0.661 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.028 0.972 47 H 0.015 0.985 48 H 0.262 0.738 49 H 0.024 0.976 50 H -0.004 1.004 51 H 0.040 0.960 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -22.114 -6.437 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.104 4.104 5 H 0.090 0.910 6 C -0.201 4.201 7 C -0.141 4.141 8 C -0.132 4.132 9 C -0.030 4.030 10 H 0.079 0.921 11 C -0.234 4.234 12 N -0.310 5.310 13 C 0.006 3.994 14 H 0.044 0.956 15 C -0.120 4.120 16 C -0.057 4.057 17 C -0.515 4.515 18 C -0.179 4.179 19 N -0.574 5.574 20 Si 0.767 3.233 21 H -0.200 1.200 22 H -0.218 1.218 23 H -0.179 1.179 24 C -0.030 4.030 25 C -0.135 4.135 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.158 0.842 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.014 0.986 51 H 0.059 0.941 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.397 -22.080 -6.357 23.019 hybrid contribution 0.151 1.314 -0.078 1.325 sum -1.245 -20.766 -6.435 21.776 Atomic orbital electron populations 1.21797 0.95981 1.01838 1.01568 1.21561 0.95755 0.96403 1.02226 1.21654 0.95333 0.97069 1.01258 1.21126 0.94792 0.96059 0.98472 0.90999 1.21876 1.01112 1.00425 0.96720 1.21473 0.95490 0.95909 1.01242 1.21523 0.95556 0.94211 1.01935 1.21672 0.94124 0.95344 0.91860 0.92100 1.22431 0.96858 1.01236 1.02862 1.60628 1.53861 1.06511 1.09981 1.21095 0.95965 0.86603 0.95761 0.95615 1.21384 0.96221 0.95557 0.98807 1.19795 0.96436 0.94022 0.95452 1.20666 1.04392 1.13775 1.12684 1.25626 1.01038 0.95917 0.95328 1.69977 1.39865 1.22397 1.25169 0.85804 0.80655 0.76803 0.80036 1.20014 1.21784 1.17878 1.19320 0.94618 0.92717 0.96387 1.21594 0.98528 0.96714 0.96652 0.92991 0.92056 0.93237 0.91718 0.91601 0.93176 0.92727 0.93828 0.92094 0.92324 0.92668 0.93714 0.91085 0.91464 0.91759 0.91011 0.94238 0.84217 0.93390 0.94053 0.95349 0.96631 0.92896 0.95769 0.98585 0.94104 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.57 16 2 C -0.12 -1.88 5.69 30.59 0.17 -1.70 16 3 C -0.12 -2.16 4.68 30.59 0.14 -2.01 16 4 C -0.09 -1.58 2.39 -10.79 -0.03 -1.60 16 5 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.14 -2.50 8.70 71.98 0.63 -1.88 16 7 C -0.10 -2.32 4.57 30.60 0.14 -2.18 16 8 C -0.09 -1.92 4.65 30.59 0.14 -1.78 16 9 C 0.08 1.97 2.39 44.91 0.11 2.08 16 10 H 0.06 1.69 7.08 -2.39 -0.02 1.67 16 11 C -0.18 -3.77 9.15 71.98 0.66 -3.12 16 12 N -0.68 -20.12 5.51 -469.61 -2.59 -22.70 16 13 C 0.12 4.28 2.21 44.89 0.10 4.38 16 14 H 0.03 1.00 7.11 -2.39 -0.02 0.98 16 15 C -0.08 -3.30 5.43 30.66 0.17 -3.13 16 16 C -0.02 -0.89 5.60 30.11 0.17 -0.72 16 17 C -0.50 -26.82 5.51 -16.17 -0.09 -26.91 16 18 C 0.02 1.05 5.46 84.66 0.46 1.51 16 19 N -0.93 -56.24 12.73 21.45 0.27 -55.96 16 20 Si 0.94 44.48 27.27 68.60 1.87 46.35 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.25 -11.37 6.46 99.48 0.64 -10.72 16 24 C 0.01 0.39 5.97 30.11 0.18 0.57 16 25 C -0.10 -4.09 5.24 30.66 0.16 -3.93 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.97 6.56 -2.39 -0.02 0.95 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.91 6.56 -2.39 -0.02 0.90 16 35 H 0.06 0.97 6.56 -2.39 -0.02 0.95 16 36 H 0.05 1.52 7.75 -2.39 -0.02 1.50 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.32 6.56 -2.39 -0.02 1.30 16 40 H 0.06 1.25 8.13 -2.38 -0.02 1.23 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.04 0.97 7.42 -2.39 -0.02 0.96 16 43 H 0.34 9.38 8.03 -89.70 -0.72 8.66 16 44 H 0.05 1.75 7.37 -2.39 -0.02 1.73 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.03 1.31 4.78 -2.39 -0.01 1.29 16 47 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 49 H 0.02 1.37 7.07 -2.39 -0.02 1.35 16 50 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 51 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.05 1.78 8.05 -2.38 -0.02 1.76 16 Total: -1.00 -59.13 383.22 3.44 -55.69 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.06 Total: 18.62 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 3.83 Total: -42.00 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -2.31 Total: -78.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.87 Total: 46.35 kcal Total: -59.13 3.44 -55.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257469785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.638 kcal (2) G-P(sol) polarization free energy of solvation -59.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds