Wall clock time and date at job start Tue Mar 31 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47298 * 2 1 4 4 C 1.52998 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47028 * 54.99652 * 4 3 2 6 6 C 1.52999 * 109.47230 * 294.99690 * 4 3 2 7 7 C 1.53002 * 109.47027 * 174.99727 * 4 3 2 8 8 C 1.52998 * 109.47020 * 184.99810 * 7 4 3 9 9 C 1.53002 * 109.47111 * 184.72795 * 8 7 4 10 10 H 1.08998 * 109.47023 * 57.39064 * 9 8 7 11 11 C 1.53002 * 109.47183 * 297.38921 * 9 8 7 12 12 N 1.46903 * 109.47014 * 177.39105 * 9 8 7 13 13 C 1.46849 * 110.99861 * 306.25006 * 12 9 8 14 14 C 1.53035 * 109.52348 * 174.16230 * 13 12 9 15 15 C 1.53126 * 109.27766 * 59.17788 * 14 13 12 16 16 C 1.53115 * 109.15996 * 302.34669 * 15 14 13 17 17 H 1.08996 * 109.50295 * 297.71049 * 16 15 14 18 18 C 1.50703 * 109.49889 * 177.59030 * 16 15 14 19 19 H 1.08000 * 120.00587 * 240.19524 * 18 16 15 20 20 C 1.37882 * 119.99590 * 60.20286 * 18 16 15 21 21 N 1.31516 * 120.00175 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99813 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46987 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47200 * 119.99673 * 22 20 18 25 25 H 1.48497 * 109.46933 * 239.99867 * 22 20 18 26 26 C 1.46852 * 110.99734 * 182.04504 * 12 9 8 27 27 H 1.08996 * 109.47399 * 59.99942 * 1 2 3 28 28 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47278 * 300.00135 * 1 2 3 30 30 H 1.08999 * 109.47278 * 239.99865 * 2 1 3 31 31 H 1.09002 * 109.46871 * 119.99622 * 2 1 3 32 32 H 1.08999 * 109.47066 * 59.99736 * 3 2 1 33 33 H 1.09005 * 109.46816 * 300.00165 * 3 2 1 34 34 H 1.08994 * 109.47476 * 179.97438 * 6 4 3 35 35 H 1.08998 * 109.46991 * 300.00698 * 6 4 3 36 36 H 1.09009 * 109.47136 * 59.99961 * 6 4 3 37 37 H 1.09003 * 109.47225 * 65.00259 * 7 4 3 38 38 H 1.09002 * 109.47470 * 305.00228 * 7 4 3 39 39 H 1.09003 * 109.46900 * 64.72795 * 8 7 4 40 40 H 1.09001 * 109.47372 * 304.72658 * 8 7 4 41 41 H 1.09000 * 109.47128 * 59.99606 * 11 9 8 42 42 H 1.08999 * 109.47076 * 180.02562 * 11 9 8 43 43 H 1.09008 * 109.46750 * 300.00163 * 11 9 8 44 44 H 1.08996 * 109.46339 * 294.17869 * 13 12 9 45 45 H 1.08998 * 109.46043 * 54.15044 * 13 12 9 46 46 H 1.09000 * 109.50377 * 179.12098 * 14 13 12 47 47 H 1.08997 * 109.50231 * 299.20230 * 14 13 12 48 48 H 1.08999 * 109.51619 * 62.25044 * 15 14 13 49 49 H 1.09001 * 109.52292 * 182.44169 * 15 14 13 50 50 H 0.96995 * 119.99746 * 179.97438 * 21 20 18 51 51 H 1.08997 * 109.45988 * 305.85011 * 26 12 9 52 52 H 1.08999 * 109.46267 * 65.82251 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0800 2.8795 -0.1251 8 6 5.6049 2.8703 -0.2499 9 6 6.1247 4.3094 -0.2571 10 1 5.7996 4.8176 0.6507 11 6 5.5719 5.0452 -1.4794 12 7 7.5926 4.2995 -0.3139 13 6 8.1554 3.4755 0.7635 14 6 9.6719 3.3697 0.5875 15 6 10.2837 4.7730 0.6201 16 6 9.6457 5.6251 -0.4805 17 1 9.8686 5.1884 -1.4540 18 6 10.1996 7.0252 -0.4173 19 1 9.5371 7.8609 -0.2467 20 6 11.5522 7.2394 -0.5776 21 7 12.3591 6.2217 -0.7850 22 14 12.2387 8.9749 -0.5000 23 1 11.1316 9.9348 -0.2587 24 1 13.2251 9.0681 0.6060 25 1 12.9049 9.3016 -1.7863 26 6 8.1299 5.6656 -0.2734 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 5.1694 0.8327 1.3086 35 1 3.7157 1.4227 2.1498 36 1 3.7161 -0.1907 1.3980 37 1 3.7913 3.4463 0.7600 38 1 3.6458 3.3430 -1.0110 39 1 5.8905 2.3762 -1.1785 40 1 6.0354 2.3328 0.5951 41 1 4.4828 5.0524 -1.4373 42 1 5.9426 6.0702 -1.4847 43 1 5.8971 4.5368 -2.3872 44 1 7.9327 3.9351 1.7264 45 1 7.7151 2.4790 0.7263 46 1 10.0912 2.7709 1.3961 47 1 9.8951 2.8969 -0.3689 48 1 10.0939 5.2305 1.5911 49 1 11.3585 4.7058 0.4518 50 1 13.3105 6.3724 -0.8980 51 1 7.6712 6.2597 -1.0637 52 1 7.9074 6.1149 0.6944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257480128.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:14 Heat of formation + Delta-G solvation = -59.150835 kcal Electronic energy + Delta-G solvation = -23064.588598 eV Core-core repulsion = 20061.448515 eV Total energy + Delta-G solvation = -3003.140082 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.31204 -38.46144 -36.46494 -34.67642 -33.58935 -31.82873 -31.26385 -28.99424 -27.60052 -26.97299 -25.71092 -24.30496 -22.92842 -22.14290 -20.77562 -20.75395 -20.34325 -18.40558 -17.11175 -16.48479 -16.35989 -16.17589 -15.67375 -15.16795 -15.02565 -14.74279 -14.58599 -14.37611 -14.21534 -14.00044 -13.79389 -13.60425 -13.27160 -12.95852 -12.87055 -12.79942 -12.66079 -12.49685 -12.44263 -12.42189 -12.14660 -11.96115 -11.91122 -11.75143 -11.65010 -11.39930 -11.37803 -11.26798 -11.07303 -11.00325 -10.72384 -10.60089 -10.35618 -9.07871 -8.08365 -6.22524 1.39207 1.40596 1.52197 2.42078 3.07498 3.18226 3.76018 3.96057 4.03317 4.10595 4.16924 4.21854 4.31031 4.36132 4.42692 4.49193 4.54829 4.58386 4.62514 4.64429 4.74184 4.80395 4.86260 4.88570 4.90115 4.91042 4.97374 5.01630 5.04232 5.08706 5.11626 5.15358 5.20280 5.22257 5.28934 5.32278 5.35579 5.38791 5.39818 5.48206 5.50619 5.54027 5.62978 5.63895 5.66374 5.98253 6.14480 6.23353 6.45888 6.48375 6.90427 7.45164 8.96473 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.041147 B = 0.002863 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.319558 B = 9776.516233 C =10234.317591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.088 4.088 5 H 0.067 0.933 6 C -0.150 4.150 7 C -0.107 4.107 8 C -0.106 4.106 9 C 0.078 3.922 10 H 0.027 0.973 11 C -0.141 4.141 12 N -0.544 5.544 13 C 0.064 3.936 14 C -0.111 4.111 15 C -0.104 4.104 16 C 0.053 3.947 17 H -0.005 1.005 18 C -0.535 4.535 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.915 5.915 22 Si 0.955 3.045 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.081 3.919 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.020 0.980 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.019 0.981 49 H 0.057 0.943 50 H 0.260 0.740 51 H 0.060 0.940 52 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.654 -11.660 2.876 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.149 4.149 4 C -0.107 4.107 5 H 0.085 0.915 6 C -0.207 4.207 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.030 4.030 10 H 0.045 0.955 11 C -0.198 4.198 12 N -0.269 5.269 13 C -0.064 4.064 14 C -0.148 4.148 15 C -0.142 4.142 16 C 0.034 3.966 17 H 0.014 0.986 18 C -0.574 4.574 19 H 0.068 0.932 20 C -0.186 4.186 21 N -0.555 5.555 22 Si 0.780 3.220 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.046 4.046 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.078 0.922 52 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -20.346 -11.905 2.404 23.696 hybrid contribution 0.772 1.497 0.711 1.828 sum -19.574 -10.409 3.115 22.387 Atomic orbital electron populations 1.21781 0.95678 1.01779 1.01792 1.21585 0.95984 0.96767 1.02043 1.21628 0.94349 0.96990 1.01916 1.21114 0.95445 0.95749 0.98372 0.91474 1.21931 1.00868 1.00872 0.97008 1.21623 0.94001 0.96852 1.02015 1.21703 0.96005 0.94327 1.02363 1.21719 0.86500 0.97451 0.97284 0.95494 1.21878 1.01025 0.99376 0.97534 1.62014 1.06268 1.12097 1.46484 1.22090 0.94903 0.98003 0.91366 1.21590 0.95068 0.97285 1.00890 1.21460 1.01379 0.94211 0.97151 1.18583 0.90134 0.94002 0.93867 0.98634 1.21548 0.93058 0.93608 1.49141 0.93231 1.25742 0.97466 1.00610 0.94809 1.70046 1.03969 1.31548 1.49912 0.85557 0.78311 0.80417 0.77665 1.19225 1.20558 1.20538 1.21995 0.96597 0.88368 0.97686 0.92786 0.92467 0.92777 0.92234 0.91782 0.92154 0.92035 0.93040 0.92934 0.92035 0.92276 0.91341 0.91860 0.91384 0.90116 0.94042 0.92563 0.96213 0.88882 0.91332 0.93119 0.96168 0.92417 0.93067 0.92153 0.97465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.13 -1.59 5.69 30.59 0.17 -1.42 16 3 C -0.11 -1.54 4.68 30.59 0.14 -1.40 16 4 C -0.09 -1.39 2.39 -10.79 -0.03 -1.42 16 5 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 6 C -0.15 -2.34 8.71 71.98 0.63 -1.71 16 7 C -0.11 -1.95 4.26 30.59 0.13 -1.82 16 8 C -0.11 -2.46 4.23 30.59 0.13 -2.33 16 9 C 0.08 2.29 2.18 44.92 0.10 2.38 16 10 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 11 C -0.14 -3.83 8.74 71.98 0.63 -3.20 16 12 N -0.54 -20.13 4.53 -871.10 -3.94 -24.07 16 13 C 0.06 2.21 5.09 86.32 0.44 2.65 16 14 C -0.11 -4.39 6.09 30.65 0.19 -4.20 16 15 C -0.10 -5.15 5.03 30.67 0.15 -5.00 16 16 C 0.05 2.79 2.26 -11.49 -0.03 2.77 16 17 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 18 C -0.53 -30.57 8.56 25.60 0.22 -30.35 16 19 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 20 C 0.01 0.70 5.31 84.66 0.45 1.15 16 21 N -0.92 -54.25 11.36 21.45 0.24 -54.01 16 22 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 C 0.08 3.59 4.48 86.33 0.39 3.97 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.80 6.56 -2.39 -0.02 0.78 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.05 0.88 6.47 -2.39 -0.02 0.86 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.85 6.57 -2.38 -0.02 0.84 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.20 6.74 -2.39 -0.02 1.18 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.56 4.26 -2.39 -0.01 1.55 16 41 H 0.08 1.73 6.60 -2.39 -0.02 1.71 16 42 H 0.04 1.25 6.32 -2.39 -0.02 1.24 16 43 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.09 2.69 5.81 -2.39 -0.01 2.67 16 46 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 3.22 6.16 -2.39 -0.01 3.21 16 50 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 51 H 0.06 2.65 6.07 -2.39 -0.01 2.64 16 52 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -61.21 378.52 3.59 -57.62 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.83 Total: 14.74 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 4.43 Total: -40.93 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -3.70 Total: -78.08 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -61.21 3.59 -57.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257480128.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.529 kcal (2) G-P(sol) polarization free energy of solvation -61.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds